Genbank ID Gene name Gene category Sub-category1 Sub-category2 Organism GWR5N_1WU GWR5N_1UU GWR5N_2WU GWR5N_2UU GWR5N_3WU GWR5N_3UU GWR5N_4WU GWR5N_4UU GWR5N_5WU GWR5N_5UU GWR5N_6WU GWR5N_6UU 88812720 TerZ Metal Resistance Tellurium Nitrococcus mobilis Nb-231 9022.8359 13074.8798 46701.8429 10977.5466 29040.4453 15733.5168 21710.9181 10333.4535 124261619 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 3813.6187 3143.4943 3878.9718 7949.6754 3254.8351 42475466 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous 4516.4247 4344.2586 5513.6014 9277.2699 4853.9825 5692.8553 10493.9557 8331.3141 125863155 dsrB Sulphur sulfite reductase Methanoculleus marisnigri JR1 4983.3590 4896.7380 4138.2126 3916.1713 116268722 CopA Metal Resistance Copper Polynucleobacter sp. QLW-P1DMWA-1 7151.8664 4045.3479 5943.9506 4696.9790 142688 endochitinase Carbon cycling Carbon degradataion Chitin 7608.9773 11756.0652 14024.3196 62141.6784 14931.0474 42101.6693 31823.1678 20194.4001 13359.1511 117927612 pcc Carbon cycling Carbon fixation Acidothermus cellulolyticus 11B 4189.2185 5487.6903 4534.3444 3232.9113 145607671 nagI Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 5155.7928 3739.1905 78221556 cytochrome Energy process Energy process Geobacter metallireducens GS-15 8676.4794 6374.3743 8015.9480 14371.4070 14638.9521 23622.8654 54448.9842 26848.3586 16185.0300 12092.3263 8720.4816 10295.4084 150395819 exaA Organic Remediation Chlorinated solvents Sinorhizobium medicae WSM419 11496.0963 7902.9894 9518.9831 12681.5543 23631.3296 11716.3037 6630.0088 7617.5292 8147.3324 121720022 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 6127.7441 4152.3531 5520.1368 7472.5361 9288.7376 28700.6687 11192.9167 25559.4038 7459.5577 83594120 atzC Organic Remediation Herbicides related compound Rhodospirillum rubrum ATCC 11170 9368.6526 9315.6701 5261.9739 4341.5727 4239909 pheA Organic Remediation Aromatics Other aromatics Pseudomonas putida 3918.9597 119954449 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 4100.4290 119817918 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida W619 4348.3562 10805.9902 6248.0690 13788.2767 7591.8818 115421752 benAB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 3866.2265 5324.1099 4635.9406 3265.5554 95110646 mauAB Organic Remediation Herbicides related compound Pseudomonas 9986.0268 9699.2699 8775.4656 4552.6043 9448.8765 21964.3557 15863.0874 16643.4259 9799.5322 6515.1152 78518060 czcD Metal Resistance Cadmium,Cobalt,Zinc Bradyrhizobium sp. BTAi1 4021.9770 3218.3108 11068.6257 6309.3714 31747164 endoglucanase Carbon cycling Carbon degradataion Cellulose Hypocrea jecorina 3635.8243 9121.0418 6091.9742 10172.5592 23698.1789 10889.0609 91693268 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 9822.6200 9028.7890 6976.3187 8849.0906 7079.3747 15270.4934 7604.3706 8471.5672 7166.1709 88863099 ppx Phosphorus Phosphorus utilization Jannaschia sp. CCS1 5752.1667 4488.3067 10770.3129 3764.4547 6262.1494 14683.7973 72163247 CopA Metal Resistance Copper Thermobifida fusca YX 11657.5669 13381.3017 7441.4084 3135.7067 7466.8587 5930.7794 6002.4231 7528.6494 134034476 mer Metal Resistance Mercury Rhizobiales bacterium Is-B040 3828.3556 25064.6328 8394.4772 109626263 ArsA Metal Resistance Arsenic Haloquadratum walsbyi DSM 16790 5958.6975 4858.4688 4633.8936 8855.3373 7285.2297 6369.5253 89084686 TerZ Metal Resistance Tellurium Bacillus sp. NRRL B-14911 10232.5613 7575.2295 116812179 nifH Nitrogen Nitrogen fixation Clostridium sp. Sukashi-1 5803.7257 4595.5484 12164.3387 56809495 nifH Nitrogen Nitrogen fixation uncultured bacterium 5310.3129 5650.1578 9774.4623 19909633 gyrB other category Phylogenetic marker Roseobacter litoralis 13768.2152 13428.7194 6869.7465 10297.2706 3866.3449 5643.8173 6671.6951 5483.6994 119898765 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 5767.6023 4865.1672 2652.7713 7550.3740 118029783 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 6863.1766 7412.4393 10258.0031 13979.6062 3666.5053 6590.9221 25459.6029 12899.7813 84519016 Al Metal Resistance Aluminum Prochlorococcus marinus str. MIT 9211 4796.4713 4197.0732 11683.7704 4262.5833 4997.8762 88949311 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Halorhodospira halophila SL1 4882.6045 5312.2392 8663.7671 5254.3915 6677.6869 13617.6381 14669.0091 10279.8586 4887.2711 5144.2029 85687636 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. NAP1 10118.9939 6581.4198 5851.4039 4848.2668 5534.5280 63256821 xylA Carbon cycling Carbon degradataion Hemicellulose Pseudomonas syringae pv. syringae B728a 3870.3942 4808.3553 16751320 CadA Metal Resistance Cadmium Chlamydomonas reinhardtii 7753.6897 22380.2886 24669.8063 8232.9407 27036.1211 66371.7064 50927.5607 67304.5083 6594.7971 7677.8368 89343546 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium flavescens PYR-GCK 14250.7082 15012.0486 9352.4566 9349.8208 6368.4072 10441.5696 6352.2123 6244.8171 7059.1992 8412.6982 89211379 ZntA Metal Resistance Zinc Halothermothrix orenii H 168 8670.1142 7489.9491 15560.4991 10708.5059 3701.4336 33640924 rubisco Carbon cycling Carbon fixation Prochlorococcus marinus str. MIT 9313 4375.1099 5908.7133 2634826 pcc Carbon cycling Carbon fixation Bacillus subtilis subsp. subtilis str. 168 3816.2795 6399.9349 5194.3678 58610.6322 6781.7959 118048714 pbrA Metal Resistance Lead Chloroflexus aggregans DSM 9485 4052.8106 9759.0355 7130.0100 3402.0440 5637.5005 12326.7964 11135.6779 6700.0579 3696.7143 118467908 CadA Metal Resistance Cadmium Mycobacterium smegmatis str. MC2 155 16975.5422 12968.9335 22234.5740 22675.0100 24537.3935 31145.5317 45725.1679 46875.5793 40318.5764 37170.0550 15485.1639 17253.6307 91699573 dehH109 Organic Remediation Chlorinated solvents Polaromonas sp. JS666 5618.4657 5348.0584 5018.6988 3801.1585 6793.6697 5916.7987 5458.5418 76588519 ZntA Metal Resistance Zinc Thermoanaerobacter ethanolicus ATCC 33223 5566.5204 4984.4382 5559.9715 115374468 pcpB Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 6899.6818 9642.3915 33556.0854 27097.0991 13870.8586 48358.4183 34657.1709 103334.4512 50823.8385 18826.1772 46666.0411 104870.3665 149120191 sox Sulphur Sulphur oxidation Methylobacterium sp. 4-46 4626.0718 9665.6783 12297.8839 6518.4019 13117.2712 16585.6499 15113.8907 41732.9713 10387.1579 88792737 czcA Metal Resistance Cadmium,Cobalt,Zinc Alteromonas macleodii 'Deep ecotype' 18220.7834 18736.9652 9432.5009 19881.1314 3990.4155 11525.5563 6991.9060 9739.1706 7856.9126 8241.4804 21223300 pcc Carbon cycling Carbon fixation Streptomyces coelicolor A3(2) 5536.8134 3734.0957 4019.8839 3308.8151 6169.1154 11725.2082 14631.4642 9992.2968 6839.7671 33520805 nirK Nitrogen Denitrification uncultured bacterium 6000.9535 5366.5863 8949.4938 12994.1125 8360.5249 8886.6218 114321605 bphC Organic Remediation Aromatics Polycyclic aromatics Alkalilimnicola ehrlichei MLHE-1 4810.5800 3479.6559 77965235 proO Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 4684.8864 5995.6917 4674.0144 7175.6185 9495.8469 6752.9060 72160471 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX 9531.6969 10723.6804 14250.3836 12486.6401 17814.2714 20067.9221 23664.8342 20334.4043 12915.5299 13727.6931 9678.4771 89088349 BADH Organic Remediation Aromatics Other aromatics Bacillus sp. NRRL B-14911 6048.4245 3854.8953 78459398 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 7891.6677 7435.1270 4106.9572 5813.2722 118032693 trzN Organic Remediation Herbicides related compound Burkholderia phymatum STM815 3832.1877 5468.6999 56698487 catB Organic Remediation Aromatics BTEX and related aromatics Silicibacter pomeroyi DSS-3 3633.6232 4537.3283 46307986 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11404.4267 11596.0856 12418.4784 4903.1447 118072880 czcD Metal Resistance Cadmium,Cobalt,Zinc Shewanella woodyi ATCC 51908 13490.9267 11991.6106 13285.5729 10281.9154 12833.5983 38595.6132 35061.0331 10230.1611 21286.3660 43822.7660 24986.9580 114228535 phenol_oxidase Carbon cycling Carbon degradataion Lignin Cryptococcus neoformans var. grubii 8946.7123 7856.8892 14040.9958 6724.8815 19447.4899 17052.6114 12079.2091 12376.8900 13948.1952 89053930 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 4503.1606 5016.5126 8732.5266 113866210 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 6651.5206 7568.6635 5458.9983 14676.3065 33869.9340 29224.8732 59711180 ChrA Metal Resistance Chromium Vibrio fischeri ES114 7311.3495 6342.2288 73659743 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 7958.1471 4893.7118 6068.2379 6453.4369 3744.1910 71847594 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB 5849.4566 5588.6243 4749.7424 3417.6878 5833.7952 15696.6787 8095.7017 7462.5420 110284142 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 4177.6826 5055.2971 3211.8573 14946.6842 16012.1457 34769.4602 11993.3308 6262.2276 12308.6067 7588.3675 91976687 Catechol Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisB5 4289.9834 3974.7402 89892751 gyrB other category Phylogenetic marker Desulfitobacterium hafniense Y51 6522.4275 6232.7743 4135.5585 68135519 nifH Nitrogen Nitrogen fixation uncultured bacterium 8150.3876 4146.9103 55772535 mer Metal Resistance Mercury Thermus thermophilus HB8 5974.6069 6600.4101 3467.9574 88864142 ArsC Metal Resistance Arsenic Jannaschia sp. CCS1 4309.4743 12541.3427 7238.2053 13773.0430 29815.8955 50029.2673 20792.5068 55229190 CopA Metal Resistance Copper Haloarcula marismortui ATCC 43049 8620.9058 10957.8999 4307.9785 6115.5039 91715324 czcD Metal Resistance Cadmium,Cobalt,Zinc Shewanella denitrificans OS217 9181.9949 8998.1884 4439.5673 7440.6794 2991.5782 3627.8826 83649351 CopA Metal Resistance Copper Hahella chejuensis KCTC 2396 4140.9967 5111.1230 16218.2032 145595465 TerC Metal Resistance Tellurium Salinispora tropica CNB-440 3828.5355 3246.9673 7845.2773 7595786 amoA Nitrogen Nitrification unidentified bacterium 6520.8402 5661.3228 67985209 ureC Nitrogen Ammonification Kineococcus radiotolerans SRS30216 11652.6405 6614.9171 63837.5746 86041.2474 81745.0356 65042.0712 14937.3027 18399.2996 22193.0486 23010.3154 115365508 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 5791.6208 8922.7493 8359.5498 27293.7354 39123.1375 66736.5872 33852.0512 61388.0285 23472.6294 46461.9537 70646.2033 91696245 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 11452.7636 4491.9935 6710.0394 6321.7037 88703322 tfdA Organic Remediation Aromatics Chlorinated aromatics gamma proteobacterium KT 71 9114.8573 7681.8625 10088.1300 126707786 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 11617.5164 10454.8346 12801.3971 9609.1682 5068.6951 8071.7161 119451215 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 7230.7911 5633.7906 5092.4037 11355.8381 41972.5803 11636.9600 10667.7084 9588.2504 81251653 nirS Nitrogen Denitrification uncultured organism 5685.9273 8410.8244 44679.2922 57149.5650 34428.6128 9873.0608 15390.9627 24485.8035 123229740 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4015.0187 25302.6454 49046.1364 21300.6276 7453.0103 17432.2767 146277744 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 4734.1979 4774.8043 5926.1099 4515.7920 94554279 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus geothermalis DSM 11300 15945.2273 16752.7151 11437.4140 12316.7805 2877.3403 5884.3084 6586.4105 6289.8368 5299.3079 69301315 FTHFS Carbon cycling Acetogenesis Silicibacter sp. TM1040 4491.0261 4287.3987 13253.9462 11276.4962 19261.8706 23948.3456 10377.4871 425214 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. 17992.9001 20375.0912 15108.4214 16294.7209 3773.6187 9181.8705 14648.4357 15499.5903 10048.5132 13223.7388 12481.7963 7528.5845 110600695 mer Metal Resistance Mercury Geobacter sp. FRC-32 7524.1506 6193.5662 4805.0063 9633.0624 145592737 czcD Metal Resistance Cadmium,Cobalt,Zinc Salinispora tropica CNB-440 12175.8181 9506.0325 17488.3895 4956.4326 13925.1348 64232.4287 28352.2255 17189.8891 22160.1086 7305.2889 85672202 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 19663.8708 26730.5790 24897.5179 47866.1121 15683.8022 18814.1623 34906.3930 45952.7946 31957.8917 21333.2745 16069.8725 13840.5100 109898541 trzN Organic Remediation Herbicides related compound Pseudoalteromonas atlantica T6c 16540.1006 20535.4830 8667.9367 10526.5286 3041.5309 5717.8408 6060.6227 6542.8459 6549.4986 78042621 alkK Organic Remediation Others Carboxydothermus hydrogenoformans Z-2901 11116.4957 5578.1360 15711.5227 10927.2154 3157720 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 6015.2500 5344.9051 10174629 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 15867.7591 17687.3752 10841.4493 5317.1700 7998.0665 6195.1480 112359633 dmsA Organic Remediation Others Campylobacter jejuni subsp. jejuni NCTC 11168 7885.6470 7361.6731 6387.2957 4359.1552 8060.9909 4718.4097 83647104 norB Nitrogen Denitrification Hahella chejuensis KCTC 2396 14591.0026 14507.3498 7866.1546 9646.2574 16852.4099 10741.9274 8053.3519 56410462 fcbA Organic Remediation Aromatics Chlorinated aromatics Geobacillus kaustophilus HTA426 10197.4532 7076.1081 6092.5746 146338092 Arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 4829.8342 6760.5128 5741.8531 16327.4901 118173204 pcc Carbon cycling Carbon fixation Mycobacterium smegmatis str. MC2 155 4128.9906 4571.1854 5296.4121 40253015 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5956.3422 4215.3539 17678.9493 31735.8703 12830.8014 13648.2880 148252364 alkK Organic Remediation Others Bradyrhizobium sp. BTAi1 4116.2989 3979.0107 8695.0767 12276.2326 7571.3082 7183.7919 11375.9404 55229181 merP Metal Resistance Mercury Haloarcula marismortui ATCC 43049 8767.9665 9628.4709 5938.6901 4635.8052 15625032 sox Sulphur Sulphur oxidation Rhodovulum sulfidophilum 3711.2208 4273.6323 9148.9336 6220.5766 5134.3772 5531.5086 23314.3518 15002.5181 14810.5189 6918.0971 6617.1586 70998454 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus fumigatus Af293 11527.6522 10747.1993 10809.6500 13295.4756 3084.2545 8882.9551 56501.9930 61628.0399 47169.0221 8211.8547 7771.1159 6358.5014 118424511 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 27844.5944 19099.8976 9390.8046 21087.9522 16724.2112 15017.8867 39442.9434 16327.6015 25091.2046 32405.7539 17388.2326 26099.8213 17429895 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum 4304.8899 2968.4082 7513.8466 6778.5915 5219.5217 78102111 nifH Nitrogen Nitrogen fixation uncultured bacterium 9116.8896 10190.4396 4876.6473 5032.6832 4593.8047 72121326 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 5056.0887 5060.1186 5664.4367 3013.1384 5889.6869 12539.5997 8508.1499 6682.7483 5708.4990 85711146 ZntA Metal Resistance Zinc Idiomarina baltica OS145 6145.0198 4986.1702 21583.6602 21306.5452 36283.1174 27790.0683 12724.7272 6117.6222 8797.3386 9148.1979 148255927 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 6826.1118 5741.4654 115352641 ChrA Metal Resistance Chromium Burkholderia cepacia AMMD 11881.3799 12873.6918 5194.2546 4288.1802 14914.7607 11586.2253 13921.5490 6425.1462 12185.3745 117576547 czcD Metal Resistance Cadmium,Cobalt,Zinc Gramella forsetii KT0803 11747.6933 7492.4993 7255.5449 94471163 narG Nitrogen Denitrification uncultured bacterium 4395.8399 3447.2353 57903688 gyrB other category Phylogenetic marker Xylella fastidiosa 18863.1369 21985.0326 10800.8167 15414.6910 4572.3922 5988.2534 7819.7795 6523.6421 134300814 CopA Metal Resistance Copper Desulfotomaculum reducens MI-1 8780.5297 11074.4629 16409.4614 34988.1718 3121.6229 16855.2698 30642.1034 42451.4235 134132818 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 4130.9900 6370.6946 119864997 mer Metal Resistance Mercury Psychromonas ingrahamii 37 4433.9771 4260.5968 11270.0396 5166.1058 12639.0449 20216.1718 17931.1796 10127.6884 5992.3677 123978259 catB Organic Remediation Aromatics BTEX and related aromatics Hyperthermus butylicus DSM 5456 5434.7891 5263.6901 6879.2640 3651.2426 84693251 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 6779.6243 8998.7547 5719.6581 2535.6890 8427.4999 4847.5196 4945.6752 76667545 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 7500.9540 5852.7567 5326.5693 110634738 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 9545.9103 6724.9754 14929.6694 9661.7637 6607.9591 65233.9514 53953.7774 89490.7272 78582.8042 30912.9634 8167.4800 23249.0561 118175273 ureC Nitrogen Ammonification Mycobacterium smegmatis str. MC2 155 6877.3759 109640289 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense DCB-2 5437.3557 77460209 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 3436.9133 9686.9706 26399.8599 15664.1094 5550.8281 9991.7276 126719177 CopA Metal Resistance Copper Roseobacter sp. SK209-2-6 5408.3406 5701.4271 5205.0221 4886552 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. 3502.8525 11875.3729 3188.7120 5964.8028 56908484 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 18342.7991 22212.3457 10891.6485 15705.9227 4981.7684 13981.3339 35177.7752 7937.5132 17204.9530 10500.5780 9854.7795 11868.9345 37724518 ureC Nitrogen Ammonification Nitrosospira briensis 9317.8050 10229.9230 4932.2628 6462.7428 6914.4320 89336704 ZntA Metal Resistance Zinc Desulfitobacterium hafniense Y51 10496.7383 13643.6870 11513.3845 6728.9577 6295.6345 13075.6015 9839.1264 5079.1210 9147.0409 6821.0427 157164265 CopA Metal Resistance Copper Campylobacter concisus 13826 9684.2254 9542.2716 13179.2241 14031.6052 7659.6211 12322.1999 13831.7137 15561.0714 12758.0417 9450.1032 6276.2824 5813.5738 3282336 rubisco Carbon cycling Carbon fixation Thiobacillus intermedius K12 5663.3512 5133.4221 88062822 ArsC Metal Resistance Arsenic Rhizobium leguminosarum 8070.2864 5985.4336 157679006 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8055.3637 5504.9596 9441.0573 13991.4481 20547.9061 16959.4302 40002.0073 44745.9455 17220.0001 11632.4064 150002688 ChrA Metal Resistance Chromium Bacteroides vulgatus ATCC 8482 7626.5962 6789.9081 13939.0814 13183.9162 4231.3432 10069.7238 9297.6272 89352801 Apc Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 5544.8170 7673.4256 6284.7137 6763.7733 7585.2520 11628.2934 8268.1818 5515.6478 49473721 gyrB other category Phylogenetic marker Bartonella quintana str. Toulouse 19043.1065 6202.2982 11250.7831 24730.5336 28051.3982 65661.4879 45880.9373 39683.8042 63971.1801 53362.5820 68872.5330 94335.3481 39997730 amyA Carbon cycling Carbon degradataion Starch Geobacter sulfurreducens PCA 7463.8701 6942.4475 3216.9317 119416759 phenol_oxidase Carbon cycling Carbon degradataion Lignin Funalia trogii 5066.3799 4894.8952 6473.5604 5501.5947 48995934 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 8092.2068 8764.8948 6577.4878 4057.2137 124258441 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 4811.6220 15609.5577 18736.2825 18153.9547 10560.6321 8766.4621 15740.4830 89512880 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 8094.4682 7609.5204 9725.1702 4672.7357 7164.8393 11222.4327 13594.4138 7018.7037 6966.0703 68201857 CODH Carbon cycling Carbon fixation Frankia sp. EAN1pec 5161.6619 4454.8492 9497.0465 16632.1845 56694506 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9983.7275 6497.1989 7773.7612 8131.8609 6330.8509 13639.4082 22420.2012 19410.8374 9045.2188 21024.9783 13616.7203 15146.2836 37200382 TehB Metal Resistance Tellurium Vibrio vulnificus YJ016 4175.0529 5635.4075 6241.3370 8628.4832 23864.1877 15210.1992 11731.7684 7228.7768 9379.4199 17744079 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 7681.7974 8597.1448 4818.6308 4473.0449 7673.4857 149947841 CopA Metal Resistance Copper Alkaliphilus metalliredigens QYMF 4533.3578 6244.2173 5536.0982 10212.3804 7482.0467 28569.6565 12222.6064 9355.3986 125601752 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 8495.0105 7774.3116 8226.9267 2715.0996 5412.4291 118589390 CopA Metal Resistance Copper Stappia aggregata IAM 12614 32343.0005 33103.1362 36409.8303 45314.4078 14121.1787 17689.4597 28051.7771 37216.7933 22475.8954 14807.8188 13878.6735 13575.1074 67921918 CopA Metal Resistance Copper Crocosphaera watsonii WH 8501 13040.1941 13465.5241 7604.8387 7593.5269 5164.9751 4377.7665 90954589 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7633.7236 4096.3398 5725.2644 13067.4199 16621.2552 32733.1203 42293.9423 43378.9158 72835.9919 35598.9835 15392.3421 18960.5224 121495873 phenol_oxidase Carbon cycling Carbon degradataion Lignin Ganoderma lucidum 25753.9353 14690.0642 40233.8982 53240.0253 29053.6789 53496.4220 46882.7878 33553.4730 72112.5609 42789.1342 52462.5542 46881.3819 114194989 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 6879.2010 23329.0704 22840.8153 41779.8169 24957.6473 16943.0791 15225.7486 13761.5578 66046312 silC Metal Resistance Silver Pseudomonas syringae pv. syringae B728a 4996.9165 4214.1884 12567.7413 12174.2872 18844.1635 59306.1746 47055.6777 67574.6137 6554.1866 7003.3224 8488.6391 119876704 TerC Metal Resistance Tellurium Stenotrophomonas maltophilia R551-3 6947.9816 7002.7272 6108.9976 3632.4469 4287.9978 5716.4708 118174473 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium smegmatis str. MC2 155 3977.3674 58261038 amyA Carbon cycling Carbon degradataion Starch Cryptococcus neoformans var. neoformans JEC21 5948.4783 7343.3879 4542.8940 34102575 CopA Metal Resistance Copper Chromobacterium violaceum ATCC 12472 12045.9883 17640.0321 12207.1347 13663.5890 4566.0004 8229.8618 10570.7563 12511.4880 7819.7153 10440.9630 8262.5775 87309129 endoglucanase Carbon cycling Carbon degradataion Cellulose Blastopirellula marina DSM 3645 14499.3237 14584.3873 8120.1035 9303.7262 5090.2927 7979.0047 5135.2156 85773958 czcA Metal Resistance Cadmium,Cobalt,Zinc Anaeromyxobacter dehalogenans 2CP-C 4433.2807 4607.3251 6390.7928 94481134 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. A4 5410.2614 6863.9377 7598.6533 86145024 catB Organic Remediation Aromatics BTEX and related aromatics Vibrio sp. MED222 4302.8263 91802028 sox Sulphur Sulphur oxidation Nitrobacter hamburgensis X14 11430.4080 15213.1403 20556.3260 17789.8178 3622.7741 7678.1075 24172.7569 26211.0484 23233.2530 10763.4208 9427.5752 39934633 nitA Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris CGA009 4589.4255 7244.9676 3851.7631 89045540 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 4859.1470 4741.6229 4299.0756 7666.0297 5678.1260 9148.9395 10457.2223 110285730 atzA Organic Remediation Herbicides related compound Mesorhizobium sp. BNC1 10052.0915 6908.5031 9662.1175 3811.2338 8525.1166 10181.4437 27989.6357 9878.2899 9352.5868 62512284 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7630.6266 5005.9079 3567.0601 126591313 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. B14905 4163.8606 11772.0260 77166331 ureC Nitrogen Ammonification Nitrosococcus oceani ATCC 19707 4762.3408 4011.1299 8850.3705 29605050 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 4085.9454 4560.5325 3171.2999 5135.1829 145214433 benAB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK 6164.8335 3611.5869 4400.0076 5124.8636 7839.6421 27237.0249 15319.3472 30297.6211 9231.2965 7790.3561 7689.1569 126249775 dsrA Sulphur sulfite reductase Pyrobaculum calidifontis JCM 11548 15076.1050 11549.2016 23033.9925 36436.3435 14431.7995 22448.4953 88820.4700 76960.3627 71396.2756 36867.5800 25411.2832 29074.9406 70671751 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 4929.2337 4646.8096 4191.9356 5060.9597 150400783 nifH Nitrogen Nitrogen fixation Methanococcus aeolicus Nankai-3 6326.6501 5468.9313 20809.5945 13917.7378 11676.1904 82791417 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 4760.6266 2738.2438 148531753 czcD Metal Resistance Cadmium,Cobalt,Zinc Lactobacillus reuteri F275 8817.9718 5824.8621 4010.8569 68204051 Arylest Organic Remediation Aromatics Other aromatics Frankia sp. EAN1pec 5160.6717 3801.1137 8235.5013 4050.1741 13352.9601 15401.7494 94471349 narG Nitrogen Denitrification uncultured bacterium 6341.2066 7352.5376 6253.7512 3475.5608 7526.6516 7477.4981 8615.5374 85707632 czcD Metal Resistance Cadmium,Cobalt,Zinc Erythrobacter sp. NAP1 7046.6554 4589.8036 4072.4204 121535382 nifH Nitrogen Nitrogen fixation Thermosinus carboxydivorans Nor1 8730.8345 9335.9347 8792.1653 22112.7741 5672.1569 9284.4876 6140.5053 3412.5972 78221401 mer Metal Resistance Mercury Geobacter metallireducens GS-15 11714.3460 10731.6469 5123.3398 6820.8015 6986.0046 69257853 CopA Metal Resistance Copper Magnetococcus sp. MC-1 6120.4714 58337637 cellobiase Carbon cycling Carbon degradataion Cellulose Lactobacillus acidophilus NCFM 7195.6550 5104.2379 6149.2076 3076.8708 16451.7215 17304.8634 22295628 xylanase Carbon cycling Carbon degradataion Hemicellulose Thermosynechococcus elongatus BP-1 11864.9156 11569.3418 11925.2020 9071.4478 4025.1401 114054980 aclB Carbon cycling Carbon fixation Balnearium lithotrophicum 4830.8933 4584.3482 47078061 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. ST41 4042.7588 45774390 ureC Nitrogen Ammonification Nitrosospira sp. NpAV 6154.7863 5192.9583 6399.8463 41549.0671 17866.5727 11646.6097 21096.2678 37526188 xylA Carbon cycling Carbon degradataion Hemicellulose Photorhabdus luminescens subsp. laumondii TTO1 6734.3694 6441.3547 4231.1944 158520948 bco Organic Remediation Aromatics Aromatic carboxylic acid Candidatus Desulfococcus oleovorans Hxd3 17040.7250 17811.3016 11597.4355 16592.5332 4600.2856 5857.5660 11689.5717 33422.0200 25578.6874 6540.2523 6354.3538 144943179 CopA Metal Resistance Copper Geobacter bemidjiensis Bem 4625.2164 78212364 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Synechococcus sp. CC9605 7449.8113 6961.7029 5662.6345 9977.4602 5094.9223 133778530 endochitinase Carbon cycling Carbon degradataion Chitin uncultured bacterium 5215.1085 42558703 atzB Organic Remediation Herbicides related compound Arthrobacter aurescens 6379.2013 5900.9006 7630.0213 3447.5061 11520.2354 39777.4161 15516.1368 9651.0607 10002.3921 16192.3596 83816748 gyrB other category Phylogenetic marker Salinibacter ruber DSM 13855 4057.1534 22777932 alkH Organic Remediation Other Hydrocarbons Oceanobacillus iheyensis HTE831 10186.4874 10215.5559 5456.7974 15321.8706 25494.4732 13260.8284 7882.9442 33571857 ppk Phosphorus Phosphorus utilization Bordetella pertussis Tohama I 9248.2062 7621.0786 7501.6750 10161.4887 14047.4665 14962.4259 14639.8588 7786.6485 7478.9141 7509.3068 7284.8944 121708796 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 6206.1320 4291.9222 5192.1221 110647328 czcA Metal Resistance Cadmium,Cobalt,Zinc Alcanivorax borkumensis SK2 13447.0931 14178.1349 7456.7734 10360.5791 4374.0530 4753.0292 5555.7734 6736.1206 20808022 trzA Organic Remediation Herbicides related compound Thermoanaerobacter tengcongensis MB4 3851.7078 15634.7651 3067.7429 14920.5004 8479.2137 75907348 ZntA Metal Resistance Zinc Anabaena variabilis ATCC 29413 4675.5993 90954595 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4288.8982 4456.2308 3400.1763 8332.0599 13354.9548 11573.2712 4500.3586 5823.0505 7415.8317 88864126 CopA Metal Resistance Copper Jannaschia sp. CCS1 5347.9290 4487.3341 58657.6682 18936.6194 13587.8701 23173.2937 110165288 phenol_oxidase Carbon cycling Carbon degradataion Lignin Trichodesmium erythraeum IMS101 13023.3486 13569.5215 5368.2365 12169.6305 13649.9982 6082.6521 56478348 CopA Metal Resistance Copper Azoarcus sp. EbN1 7602.7336 6637.3798 13937.6808 4847.4781 83576191 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 8433.0244 9005.4940 12035.5761 126739238 atzB Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 6855.5228 6913.0160 116622615 ZntA Metal Resistance Zinc Solibacter usitatus Ellin6076 6012.6944 4920.0887 2714.0399 5128.6367 10846.0063 9834.0449 6130.3835 3753.2544 76876845 phenol_oxidase Carbon cycling Carbon degradataion Lignin Pseudoalteromonas haloplanktis TAC125 4138.3691 4930.6654 4668.5071 8267.8075 11064.8905 10474.4804 6021.7549 8168.6385 5240.8837 66048001 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas syringae pv. syringae B728a 8250.5592 7457.9070 3568.4128 57335474 nirS Nitrogen Denitrification uncultured bacterium 9009.0056 7142.2138 6127.2812 9808.9692 17714.8772 36540.3163 10522.1534 7556.3948 8756.5462 13481.2320 29610316 atzA Organic Remediation Herbicides related compound Streptomyces avermitilis MA-4680 7486.1331 7165.3135 3401.0512 5384.5734 6094.8756 8067.1379 5849.8139 39648290 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris CGA009 4403.9197 4067.0291 5729.4483 8620.9418 37651314 nahF Organic Remediation Aromatics Polycyclic aromatics Xanthobacter polyaromaticivorans 6665.5828 7597.0200 111017618 atzC Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 10981.9695 8569.0671 4589.8262 3679.8568 7116.7346 11039.5073 7753.0267 6759.0478 77459186 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 3929.1389 3735.2663 5865.0376 110612687 gyrB other category Phylogenetic marker uncultured bacterium 7905.2757 6268.2610 11190.0917 12314.2323 10126.3463 15363.4837 51534821 nirS Nitrogen Denitrification uncultured bacterium 3799.0588 4864.9307 5584.1287 6350.8073 111026206 akbF Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 6435.7276 4812.4933 6727.7267 4331.3562 91711656 CopA Metal Resistance Copper Methanococcoides burtonii DSM 6242 17736.0694 6614.0039 38558.7279 43394.2928 57608.1874 76931.7814 26011.4903 83254.4117 35361.8064 34340.4459 71006.0727 116634745 narG Nitrogen Denitrification uncultured bacterium 5616.4047 5712.7396 9484.6239 12462.4020 14504.0884 13749.6423 6401.3431 87331874 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 4518.9504 3985.3795 119535075 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 4128.5296 3992.1348 20732.1476 11951.2669 116804624 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 6155.5003 3748.4404 8026.7374 6300.7740 158329216 phn Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 14245.1540 8205.3315 4707.4151 5527.3691 154159345 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 9667.0544 7540.7725 12503.7954 8163.2975 5992.5385 9282.4974 4626.9324 119468775 pulA Carbon cycling Carbon degradataion Starch Alteromonadales bacterium TW-7 6333.5625 3691.4608 10826.0579 8165.2591 28278.8269 84696032 nagG Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 8570.3796 8597.7862 6099.9242 4100.7476 8036.9786 5504.9847 16414959 nmoA Organic Remediation Aromatics Nitoaromatics Listeria innocua 5338.6788 4451.7053 148556298 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 8679.3911 4007.2033 6422.2647 8817.4925 6694.4259 7965.8951 114764524 phn Organic Remediation Herbicides related compound Roseovarius sp. HTCC2601 10296.1517 12584.0666 13226.1885 14810.0927 3705.9219 4168.0297 19273.3744 10942.9343 13187.9663 10896.0416 58616762 czcD Metal Resistance Cadmium,Cobalt,Zinc Ehrlichia ruminantium str. Gardel 8494.1338 6464.5786 3537.1123 120588548 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 4208.2914 4330.7139 12516.7542 17932.4200 7124.7324 58860.6806 29624.8077 55232584 cytochrome Energy process Energy process Haloarcula marismortui ATCC 43049 5991.9727 5633.1450 22418.1314 52262.2443 16133.5400 55782.9236 17800.1093 26974.5598 23450983 bclA Organic Remediation Aromatics Aromatic carboxylic acid Thauera aromatica 6057.4275 4811.3249 4348.0135 3124.8966 6851.1464 16543.6925 7599.9051 13755.4420 7761.8312 8411.1377 62131474 ppk Phosphorus Phosphorus utilization uncultured bacterium 6516.9753 12034.2017 2414.3299 3879.9796 121605839 bclA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 7744.3829 6104.5786 9630.1873 43264.7029 3403.2505 7139.2760 32004.2130 85371.3300 66602.2089 7810.5817 9299.2092 6436.4664 115254344 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 5129.0520 4854.4388 5531409 alkJ Organic Remediation Other Hydrocarbons Pseudomonas putida 10114.4005 9292.2567 5951.8319 46520001 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5347.1987 4501.2893 3282.0786 99030517 ppk Phosphorus Phosphorus utilization uncultured bacterium 6786.2843 4833.7514 7163.0745 22295646 ZntA Metal Resistance Zinc Thermosynechococcus elongatus BP-1 4500.2290 8907.7977 7130.5845 18260.6110 25006.8006 17388.6447 30974.0236 20804.3007 7424.1628 22603.7750 35214621 ZntA Metal Resistance Zinc Gloeobacter violaceus PCC 7421 17984.2931 23256.3898 20131.9199 20488.6688 7663.5223 18123.9075 18237.6807 22737.7846 13482.0322 13531.7660 12610.8429 11462.7707 149184164 pcc Carbon cycling Carbon fixation Bacillus sp. SG-1 5580.2223 6040.9452 5930.8232 6322485 nbaC Organic Remediation Aromatics Nitoaromatics Saccharomyces cerevisiae 5911.5255 5055.3509 4622.8251 116743254 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6637.6519 5907.5094 24113.3536 154250806 CopA Metal Resistance Copper Parvibaculum lavamentivorans DS-1 5076.1578 6042.6167 14086.8589 111149586 linC Organic Remediation Pesticides related compound Frankia alni ACN14a 5126.5423 3893.9353 4023.8508 85520.0430 72430.5117 4802.3368 46487401 amyA Carbon cycling Carbon degradataion Starch Bacillus halodurans 6553.2152 7480.6903 3295.3419 86567242 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 8296.1487 5291.0560 7431.1573 3988.8124 9638.6675 14634.9888 11154.0146 10939.7598 11070.5931 11953.9292 90954601 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4036.5138 5097.9127 15636.4813 18931.3745 80921.9766 42574.1408 8432.9960 9451.5400 4115621 exochitinase Carbon cycling Carbon degradataion Chitin Xanthomonas sp. AK 6631.2230 3842.9879 5978.2761 2828.5394 7750.5015 10796.7615 15004.4815 15201.7462 4676.3022 110831199 vanA Carbon cycling Carbon degradataion Others Verminephrobacter eiseniae EF01-2 5297.4676 4860.7283 7597.4607 3431.5769 6391.3208 9891.4159 5652.5208 6228.0381 5124.6125 89350104 pcaG Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 4404.9056 118168989 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 4047.3260 4128.1649 154283569 nbaC Organic Remediation Aromatics Nitoaromatics Ajellomyces capsulatus NAm1 7903.8865 4735.0382 4670.0143 111021875 atzA Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 4915.9414 4186.2593 148571636 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 4507.6199 4098.4369 6927.4884 118462569 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium avium 104 4982.7151 4264.0971 4801.4160 2977.6905 5640.2784 10378.9835 10221.8060 15821.3984 8579.8805 6341.8117 148568718 nifH Nitrogen Nitrogen fixation Roseiflexus sp. RS-1 4693.7444 4856.7514 4751.4631 3979.0910 5069.7771 6116.5243 99082466 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 9392.1831 10791.0503 7541.5762 9957.7479 4636.5788 87331836 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 5849.6294 4153.6546 6772.2350 23494737 pcpE Organic Remediation Herbicides related compound Corynebacterium efficiens YS-314 5289.8831 4081.4098 4738.9826 18546.8119 89895061 bco Organic Remediation Aromatics Aromatic carboxylic acid Desulfitobacterium hafniense Y51 8119.0688 7866.4499 6669.3633 3678.5876 5804.5696 144943287 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem 11775.3150 11563.3040 12671.9082 8382.1218 2895.9041 6646.3473 4379.5953 116750382 atzA Organic Remediation Herbicides related compound Syntrophobacter fumaroxidans MPOB 4135.5004 4084.6788 5546.6041 62731974 nifH Nitrogen Nitrogen fixation uncultured bacterium 9582.2616 10840.6564 8370.2182 7021.0601 20104.3333 9235.2869 6153.0698 5559.3555 110681409 ZntA Metal Resistance Zinc Chondromyces crocatus 7652.0198 5482.1550 52629459 czcA Metal Resistance Cadmium,Cobalt,Zinc Legionella pneumophila subsp. pneumophila str. Philadelphia 1 4405.1201 4419.6576 9312.0281 5263.9440 28080.7072 21219419 dehH Organic Remediation Chlorinated solvents Streptomyces coelicolor A3(2) 3338.7953 94496283 ppx Phosphorus Phosphorus utilization Sphingomonas sp. SKA58 7352.4323 5629.5310 3896.2709 56798493 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 4542.0588 5391.3159 111225504 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Frankia alni ACN14a 7414.4378 8438.1633 14048.2800 12144.4156 116228199 nitA Organic Remediation Aromatics Other aromatics Solibacter usitatus Ellin6076 5727.4671 6007.8243 5562.3964 15080.2118 16784.3037 41153.8907 36613.0906 36503.4127 27960.6512 6011.1186 83593841 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 6664.6550 5047.3907 6561.9518 6138.4391 3792.4926 4012.1613 8669.9209 119859409 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 6374.5660 5053.2639 10282.4932 11366.3577 6478.0930 6394.9378 115368281 linB Organic Remediation Pesticides related compound Stigmatella aurantiaca DW4/3-1 23073.0805 21899.4421 16945.8139 13607.8696 4111.4073 8121.5024 7059.2820 7017.5839 6763.0081 55229628 nitA Organic Remediation Aromatics Other aromatics Haloarcula marismortui ATCC 43049 6540.5141 5738.5178 6414.9966 11380.0380 8443.6796 95113224 ppx Phosphorus Phosphorus utilization Pseudomonas 5104.9259 4473.1968 4285.0304 3636.7461 3429.8043 4479.0973 94496003 czcD Metal Resistance Cadmium,Cobalt,Zinc Sphingomonas sp. SKA58 12708.9120 10277.0423 5321.4053 7556.0928 4791.1151 62120299 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 3263.6073 2465.2728 9970.5585 25990065 gyrB other category Phylogenetic marker Mesoplasma lactucae 6072.3983 5650.1631 115375434 czcD Metal Resistance Cadmium,Cobalt,Zinc Stigmatella aurantiaca DW4/3-1 8361.9243 7904.5562 9738.0828 5664.5703 8182.8797 11677.7691 8368.4357 7487.1786 4748.2890 83765045 czcD Metal Resistance Cadmium,Cobalt,Zinc Aspergillus oryzae 7700.0378 6038.3814 5661.3903 99083075 nifH Nitrogen Nitrogen fixation uncultured bacterium 4975.8925 3925.9664 88863253 alkB Organic Remediation Other Hydrocarbons Jannaschia sp. CCS1 5546.3862 6487.4324 7389.1835 4114.4916 7372.4801 118760123 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 5229.8157 4888.8855 2545.5751 87199439 nbzB Organic Remediation Aromatics Nitoaromatics Novosphingobium aromaticivorans DSM 12444 3660.3448 3050.5992 7283.7069 5676.2015 3854.1085 149783191 nirK Nitrogen Denitrification uncultured bacterium 5075.4807 5598.4746 5028.0747 73748096 ArsC Metal Resistance Arsenic Dehalococcoides sp. CBDB1 9715.9449 9240.4668 7497.0511 148557259 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 7682.8302 5915.0375 6260.3876 8545.5830 7488.6957 9909.6672 7529.5893 78518710 Xamo Organic Remediation Other Hydrocarbons Bradyrhizobium sp. BTAi1 6868.4184 6954.6630 7945.0368 3519.6742 158438702 BADH Organic Remediation Aromatics Other aromatics Clostridium bolteae ATCC BAA-613 6750.3203 7399.3080 89512768 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 17201.2619 21494.6364 16112.9128 17680.9303 4650.9523 8017.0433 13504.8880 12766.7099 20696.6515 10475.1735 9866.7221 7850.8488 152997624 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 4983.3602 7006.5153 8501.9675 88772743 czcA Metal Resistance Cadmium,Cobalt,Zinc Alteromonas macleodii 'Deep ecotype' 8074.1465 7671.7059 5289.3395 10159.1115 6503.6434 16239.0017 9935.6365 22972.1371 22618.3498 10569.6542 87135386 mauAB Organic Remediation Herbicides related compound Novosphingobium aromaticivorans DSM 12444 16543.9246 14686.1269 10749.4842 14445.6889 7248.6358 13824.4704 12653.8076 13875.6423 8614.2427 6566.0881 6354.7407 13183747 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas aeruginosa 6838.1536 7110.9130 6084.3122 15013.1886 11796.5863 13977.0266 12528.7300 23534.7304 28048.5060 111024870 xylJ Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 4061.4405 3203.9614 6498.6890 7252.9762 6680.5781 4857.9319 26278770 narG Nitrogen Denitrification uncultured bacterium 24336.9683 17530.5097 55623.1819 61122.2784 29238.0820 42584.3918 68869.2576 66015.7633 51033.8486 28439.3910 20860.5189 26755.1033 87283379 CopA Metal Resistance Copper Synechococcus sp. WH 5701 4986.9015 6619.3538 4573.4504 108805480 ChrA Metal Resistance Chromium Rubrobacter xylanophilus DSM 9941 9436.9487 8813.4800 6876.6012 3195.3794 5199.1417 5634.0253 89950900 xylanase Carbon cycling Carbon degradataion Hemicellulose Saccharophagus degradans 2-40 5342.3458 5042.3712 74038370 nirS Nitrogen Denitrification uncultured bacterium 5397.8839 4870.1033 4183.3186 91686229 cymA Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 6754.3942 5282.0312 10273.5223 112463925 nirK Nitrogen Denitrification uncultured bacterium 6199.6988 10772.2027 4959.6665 82791399 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 6066.8071 4761.0757 4604.3564 46392666 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 6775.4041 6187.4436 495281 mnp Carbon cycling Carbon degradataion Lignin Trametes versicolor 6103.5142 10182.2325 3006039 phenol_oxidase Carbon cycling Carbon degradataion Lignin Pleurotus sp. 'Florida' 7002.7550 6693.2843 6593.2152 5312.5741 18160.3454 13165.2054 5042.6115 13476984 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 9440.0322 14267.5962 12742.4218 13002.9916 6388.1530 11183.2630 12893.5847 9354.4011 5951.5015 77165617 TerC Metal Resistance Tellurium Nitrosococcus oceani ATCC 19707 8913.9623 8185.5712 9067.9147 157679479 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 21189.5770 15613.6893 17885.0880 4990.4951 16026.7920 7812.0071 5530.3313 28016.2889 112821555 ArsC Metal Resistance Arsenic Sphingomonas sp. KA1 7987.6579 11832.1757 6297.4309 3958.1291 114766240 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 10270.5381 10413.3226 10450.8673 3561.7610 4644.8926 89241984 rubisco Carbon cycling Carbon fixation Lyngbya aestuarii PCC 7419 9102.0128 9200.6411 6101.9154 7968.0734 6765.9936 4176.3344 5767.4868 7053.1752 149811157 nagG Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. AzwK-3b 4488.2702 4167.1256 8966.7194 6370.9354 13474529 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 5720.6822 5176.1937 5018.5663 6530.8395 6390.5302 121608344 vanA Carbon cycling Carbon degradataion Others Verminephrobacter eiseniae EF01-2 11379.7325 11445.6377 5739.4607 12460.5553 10339.8232 9982.7954 6596.2334 6911.1210 7973.0083 149360459 ureC Nitrogen Ammonification Marinobacter algicola DG893 7361.4477 4389.2100 6791.7438 19160.4248 8178.0436 23611.9476 58428.1365 60885.7870 47907.2730 10051.2563 8944.6580 8449.1643 113897923 amyA Carbon cycling Carbon degradataion Starch Herpetosiphon aurantiacus ATCC 23779 4164.3660 4011.6925 6738.1250 4838.2421 146192464 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 6049.3055 3157.8231 5108.0742 4469.2558 91779182 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 6955.9789 3887.9457 4594.9111 8815.8172 7379.8016 113525667 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 9230.2065 9287.1506 5544.6859 10682.8775 13335.5023 77637375 ZntA Metal Resistance Zinc Alkaliphilus metalliredigenes QYMF 7417.1566 5584.2887 5022.9613 8337.8297 57375.5527 8501.9310 7413.7719 154154796 TerC Metal Resistance Tellurium Parvibaculum lavamentivorans DS-1 7185.6824 4378.3525 4709.1840 18724.8254 12261.8875 22813.4471 24645.0227 18374.1084 10319.9415 13634.4646 28728.2326 115260385 linB Organic Remediation Pesticides related compound Rhizobium leguminosarum bv. viciae 3841 7827.2644 7334.8599 4253.8678 3791.6849 91693344 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 4237.5035 4241.6504 1208738 tutFDG Organic Remediation Aromatics BTEX and related aromatics 6291.1213 4604.6624 7329.9452 12499.9381 76057469 nosZ Nitrogen Denitrification uncultured bacterium 4348.2153 145590783 proO Organic Remediation Aromatics Other aromatics Pyrobaculum arsenaticum DSM 13514 4205.2409 4892.8156 90104565 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 5300.6205 4506.7213 8384.4536 9952.3734 4490.8380 17638.7662 42422.9934 7329.7067 6080.6896 10543.3621 71737195 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. phaseolicola 1448A 5304.1274 4963.2944 5085.5747 21140.0328 6004.0693 10267.6005 153894158 CopA Metal Resistance Copper Halorubrum lacusprofundi ATCC 49239 7392.8990 5784.3696 5207.1007 109452527 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3574.6260 89143218 gyrB other category Phylogenetic marker Microbacterium thalassium 5486.6233 4945.0913 5824.4798 3959.5124 4856.9981 78102057 nifH Nitrogen Nitrogen fixation uncultured bacterium 8751.2044 6857.9527 5000.9315 21487.9116 7629.0576 19268.7878 12502.0326 56677636 sox Sulphur Sulphur oxidation Silicibacter pomeroyi DSS-3 3995.3670 3890.3873 6265.8177 126175709 cytochrome Energy process Energy process Shewanella baltica OS155 7675.0903 4807.2791 12872.2683 53170.0528 13750.5216 29745.1612 10732.2095 23567.7365 85694315 ppx Phosphorus Phosphorus utilization Idiomarina baltica OS145 5263.6911 23689.7113 3134.7605 6131.5202 150024774 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Flavobacterium psychrophilum JIP02/86 5285.4709 4761.6347 112462695 nirK Nitrogen Denitrification uncultured bacterium 5220.4027 5281.1295 21242623 pimF Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas axonopodis pv. citri str. 306 7180.4268 4937.1682 4511.5679 3207.7325 7619.0443 11211.7608 6065.5744 6877.2388 9955.5384 7769.0824 145701525 CopA Metal Resistance Copper Metallosphaera sedula DSM 5348 12313.8864 10429.3688 12912.6171 23926.3403 119817911 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 10192.7426 9216.8100 6753.6040 10072.1708 5264.8023 7076.5295 14853.1225 13101.5089 8686.7646 5673.5879 6253.9013 78101823 nifH Nitrogen Nitrogen fixation uncultured bacterium 5341.5952 5239.2802 4449.0388 6172.6302 9759.2766 17716.4548 11533.4228 10904.0387 5545.9679 5836.2371 7966.0701 4220431 phdCI Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. U2 6106.5417 5721.7809 6378.3663 8067.7280 8546.6356 7780.8829 7293.1734 5456.2662 7164.2148 67154153 czcA Metal Resistance Cadmium,Cobalt,Zinc Azotobacter vinelandii AvOP 3565.6458 3891.2444 58038312 czcA Metal Resistance Cadmium,Cobalt,Zinc Gluconobacter oxydans 621H 6407.3124 5706.9874 118762970 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 23340.9768 22733.4235 10835.1921 18153.9721 4350.7729 8383.5957 18634.4696 8991.8660 7110.2876 9047.1707 11874.0849 9763.6945 110635268 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 31002.2542 33501.3846 21669.4282 25851.6867 6376.1010 11903.0681 17271.5400 14577.0677 16759.9602 18382.1002 15588.6442 106652.2374 150387119 CopA Metal Resistance Copper Victivallis vadensis ATCC BAA-548 9778.4767 6229.6273 11798.4336 5807.4111 94554094 CopA Metal Resistance Copper Deinococcus geothermalis DSM 11300 9444.8878 8732.9690 6075.2134 12310.9016 3845.8624 11784.9282 4487.2097 157316094 ChrA Metal Resistance Chromium Shewanella sediminis HAW-EB3 18640.5603 6615.0367 7901.2336 23672.1920 24446.2511 30667.9161 66780.4619 23453.9137 33139.0770 26279.1815 17663.8565 42807.5922 56809455 nifH Nitrogen Nitrogen fixation uncultured bacterium 4731.7366 3283.0629 1177849 amyA Carbon cycling Carbon degradataion Starch Pseudomonas sp. KFCC10818 5378.4006 5808.5147 68343070 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens Pf-5 8022.1167 6124.7232 4136.8877 57787.8127 143773.0957 34103352 CopA Metal Resistance Copper Chromobacterium violaceum ATCC 12472 17812.3355 9980.1560 11703.1691 15752.8625 28223.5820 25206.1843 24107.8844 16225.0654 16974.7819 29818.6935 49532025 ppx Phosphorus Phosphorus utilization Acinetobacter sp. ADP1 3966.5860 3917.8805 6267.5996 5770.1215 6710.7078 8802.1262 145304624 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 4219.4556 4585.9248 7972.4605 8700.9129 10176574 alkJ Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 7345.5473 5475.2329 5278.0979 72122661 nbaC Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha JMP134 3987.7359 4749.0346 7778.7518 5113.0494 8346.0632 11270.3640 5351.6713 111614726 bclA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 7216.1946 5656.5451 3489.4351 4245.9412 6120.4187 77686324 nifH Nitrogen Nitrogen fixation Alkaliphilus metalliredigenes QYMF 10232.7389 10760.7388 5916.5450 46196366 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Thermus thermophilus HB27 4122.1004 3741.7205 158316069 mdlD Organic Remediation Aromatics Other aromatics Frankia sp. EAN1pec 6524.7342 4878.9289 6236.7901 5213.8757 21247.7230 157371265 akbF Organic Remediation Aromatics BTEX and related aromatics Serratia proteamaculans 568 7046.6529 6829.0011 5809.3085 118027753 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 6297.7923 6062.8631 22502.4334 20214.9769 7490.7384 56666.8141 34283.2105 77053.4720 51361.3833 19714.9325 20405.7593 42581.9653 72120537 silC Metal Resistance Silver Ralstonia eutropha JMP134 4468.9194 6274.7202 14228.1592 6527.0669 151364295 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Shewanella baltica OS185 7713.5655 9522.3461 17482.6463 15841.1880 7894.1788 14176.6917 22450.5215 27661.2077 17325.1882 14726.0869 10027.4948 74317490 mer Metal Resistance Mercury Thiobacillus denitrificans ATCC 25259 6245.5779 9940.5653 6822.1062 50876360 ZntA Metal Resistance Zinc Desulfotalea psychrophila LSv54 3441.6658 4061.0239 19909575 gyrB other category Phylogenetic marker Caulobacter henricii 8465.2719 6599.4639 4986.9934 4686.4501 9399.2919 35305.8643 4342.0054 110283054 CopA Metal Resistance Copper Mesorhizobium sp. BNC1 5568.9909 4722.4101 140713933 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium 5720.0019 4478.9869 9988.6470 90954587 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6480.6247 7718.4665 5332.3735 4007.7894 158138793 napA Nitrogen Dissimilatory N reduction uncultured bacterium 7156.1802 5117.3278 10907.5201 21114.0851 18031.3343 25028.7302 47901.3191 53126.0803 66303.6668 8057.8525 12844.5689 14689.9593 124488241 narG Nitrogen Denitrification uncultured bacterium 18658.0325 16506.1986 35186.4934 46839.0112 26852.0067 22607.5133 34062.8709 49773.0843 40557.1587 23322.0612 16822.2351 14709.1914 112280450 nifH Nitrogen Nitrogen fixation uncultured bacterium 6132.9992 5972.3124 4481.1582 4133.1129 8826.8235 7955.0923 11495.9709 89079597 ppx Phosphorus Phosphorus utilization Lactobacillus reuteri JCM 1112 15641.6726 11526.7594 8782.5705 12403.1525 3649.9014 9580.0860 17144.0613 10489.6159 6492.0824 111224754 nmoA Organic Remediation Aromatics Nitoaromatics Frankia alni ACN14a 3762.2829 3302.1283 8039.4354 19856.9777 8449.7298 4341.3037 5172.7184 67933455 CODH Carbon cycling Carbon fixation Solibacter usitatus Ellin6076 19054.2006 17282.2109 12974.8154 10683.5589 2786.0864 7018.1227 7531.4752 8653.6845 6709.2228 146313536 TerC Metal Resistance Tellurium Enterobacter sp. 638 28702.5597 19122.7618 13608.9824 33717.2243 115401802 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus terreus NIH2624 7295.5922 9514.1504 10660.9374 9967.1177 39339.5172 48357.5090 31436.3024 20122.1185 10499.5514 25760.8842 9371.6485 83594442 pchCF Organic Remediation Aromatics BTEX and related aromatics Rhodospirillum rubrum ATCC 11170 5302.8517 5340.6836 11235.2552 2266.0553 91202321 czcC Metal Resistance Cadmium,Cobalt,Zinc Candidatus Kuenenia stuttgartiensis 4351.4107 3802.0954 29609466 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 3769.6519 4051.5171 73660393 arsB Metal Resistance Arsenic Dehalococcoides sp. CBDB1 7269.3728 7287.1689 5005.8373 6008.0333 5852.6916 38427030 narG Nitrogen Denitrification uncultured bacterium 8172.0226 8773.8910 10790.3478 11263.2015 5904.9370 26524.9067 26516.3083 22226.4204 11957.0822 5111.3390 119814235 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida W619 5313.6533 5814.8084 3735.7230 5628.4627 5889.0725 77386754 CopA Metal Resistance Copper Rhodobacter sphaeroides 2.4.1 4136.0677 5474.7464 86565791 Xamo Organic Remediation Other Hydrocarbons Frankia sp. CcI3 5851.8278 6069.2583 4471.7545 6962.3252 4911.5599 76883336 ZntA Metal Resistance Zinc Nitrosococcus oceani ATCC 19707 19053.9364 20381.2699 8137.8856 12885.3990 5397.9357 18621.8420 9940.0617 5949.7388 6193.8097 6583.9048 53803990 ppk Phosphorus Phosphorus utilization Methylococcus capsulatus str. Bath 10478.5580 10684.2694 5242.5193 9283.2555 8800.9527 56818.9791 29102.5517 3622.2694 49072886 phtA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii 5879.5628 5902.7293 5976.6267 9389.6434 9062.1385 18714.3263 18000.6497 18657.8175 28659.7893 12877.3323 8501.5452 17384.4975 15224717 pbrA Metal Resistance Lead Arabidopsis thaliana 4854.6453 13086.3560 18165.4619 17303.2853 17463.1675 14348.3865 13677.2577 8265.0639 6060.6257 27530062 gyrB other category Phylogenetic marker Legionella pneumophila subsp. fraseri 11919.8442 8712.5402 7381.0704 10841.4690 14984.4449 4132.6978 150400987 trzA Organic Remediation Herbicides related compound Methanococcus aeolicus Nankai-3 4200.7941 6146.7611 14187.6684 6664.1690 111020357 arsB Metal Resistance Arsenic Rhodococcus sp. RHA1 4181.5372 3976.8494 3898.1080 68537002 ppx Phosphorus Phosphorus utilization Corynebacterium jeikeium K411 6878.5983 5210.6323 7254.3656 21767.5542 556331 mauAB Organic Remediation Herbicides related compound 9406.5307 8601.4200 7118.1112 5317.4498 3440.7036 149939152 dsrB Sulphur sulfite reductase uncultured bacterium 5631.1215 6264.3164 5635.7102 12450.1280 4399.9352 6708.3081 68264736 alkK Organic Remediation Others Corynebacterium jeikeium K411 9373.5804 10879.4977 6125.2192 9510.6423 3527.1737 17435.4787 5871.7875 62003555 narG Nitrogen Denitrification uncultured bacterium 10191.7812 11583.5883 6037.3150 3109.0253 4099.0940 4416.8395 6784.8581 110286002 ureC Nitrogen Ammonification Mesorhizobium sp. BNC1 3589.0536 71838962 czcA Metal Resistance Cadmium,Cobalt,Zinc Pelobacter propionicus DSM 2379 4758.3499 4883.5359 56476743 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 10168.1952 9113.9905 9401.1016 4077.2130 6717.8225 91770927 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 12212.4989 8002.5716 6951.1929 6969.8733 33603744 xylF Organic Remediation Aromatics BTEX and related aromatics Bordetella bronchiseptica RB50 6675.2335 6667.8309 7503.2981 6547.3228 4983.9141 8768.7766 25868.5988 21775.0410 14051.0829 5681.6591 9224.2564 8822.0117 88708804 pcc Carbon cycling Carbon fixation Flavobacteriales bacterium HTCC2170 7889.6865 8402.4128 4020.6663 82618399 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4865.6882 4545.4078 114338530 CadA Metal Resistance Cadmium Syntrophomonas wolfei subsp. wolfei str. Goettingen 6700.9968 5940.6543 4739.2144 11446.8199 15274.8986 4853.7591 87281062 nirK Nitrogen Denitrification uncultured bacterium 7147.1943 7757.9676 13601.1289 10200.9584 19717.1258 29775.9685 31193.4031 29549.1327 9481.4812 7664.6507 13775.4081 15889672 ureC Nitrogen Ammonification Agrobacterium tumefaciens str. C58 4329.4860 3641.1521 5342.8958 25560.9904 4092.2836 151584753 cytochrome Energy process Energy process Halorubrum lacusprofundi ATCC 49239 7823.7990 11705.2184 8477.0697 9853.2481 4424.9213 5316.9654 14024489 linB Organic Remediation Pesticides related compound Mesorhizobium loti MAFF303099 4068.2655 3844.4693 11234.1982 8812.5283 23299.6466 18021.7884 24136.2876 5623.6770 119714112 mmoX Carbon cycling Methane Methane oxidation Nocardioides sp. JS614 5560.8761 5003.2626 5758.7638 4538621 cmuA Organic Remediation Chlorinated solvents Methylobacterium chloromethanicum 9559.9439 9598.0768 9344.8455 16090.3864 5261.1642 9288.9456 46611.7208 51232.0313 38821.7371 5560.9370 7806.8792 10446.6877 150955842 TehB Metal Resistance Tellurium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 5039.1085 5072.1205 17613.7513 25131.7382 5560.1743 15903.7695 11799.8352 23234.7169 36339.5793 7008.7635 6879.6329 4997.2314 57234837 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 18445.0765 22138.7190 25602.2535 37984.6665 14828.3017 31328.1212 29395.6703 25689.5113 33208.1301 25958.8446 23273.4830 23402.3383 157285341 nosZ Nitrogen Denitrification uncultured bacterium 6204.8681 5309.9461 8443.0544 7243.8560 2619.7020 5136.3982 55229277 CopA Metal Resistance Copper Haloarcula marismortui ATCC 43049 24857.6581 24059.9383 9889.6477 10146.5574 4977.0580 12324.2847 5181.7292 11832.9169 12734.9704 10890.5478 121555349 ChrA Metal Resistance Chromium Verminephrobacter eiseniae EF01-2 3872.3694 5745.3215 2135.9320 4467.6746 21954801 ChrA Metal Resistance Chromium Synechococcus elongatus PCC 7942 9798.9772 9548.8252 6632.8304 118758098 pcaG Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 9256.6561 9148.4378 7954.0242 6354.9228 6728.4720 149143139 phn Organic Remediation Herbicides related compound Roseovarius sp. TM1035 5767.0580 8338.4387 4789.9852 8515.4835 16981.6355 5599.3277 119457757 xylF Organic Remediation Aromatics BTEX and related aromatics Lyngbya sp. PCC 8106 17852.0559 14045.1373 8244.5078 15305.6631 82685.5824 87581.7215 131767.4870 115015.4417 67139.0245 39235.5329 74923.0804 102986.9548 22299753 ZntA Metal Resistance Zinc Thermosynechococcus elongatus BP-1 7918.3254 7288.8897 3558.1080 48995725 nifH Nitrogen Nitrogen fixation uncultured bacterium 24206.8428 27455.5659 16058.0119 21140.2103 4853.6973 8952.8891 10624.2909 7872.9118 9659.7447 14768.4547 12951.2664 13186.7025 120607101 CopA Metal Resistance Copper Acidovorax sp. JS42 4122.4948 3815.8567 5776.9745 121711954 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 4596.6088 6341.4798 16588.5468 24846.4904 81162.7653 35456.9955 28219.2120 88701127 mauAB Organic Remediation Herbicides related compound Congregibacter litoralis KT71 8168.7215 8842.6933 8614.5908 2856.9431 5933.1260 6581.0487 5184.1370 146188517 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7416.1815 8888.1548 4896.3459 8875.8825 91692048 czcA Metal Resistance Cadmium,Cobalt,Zinc Burkholderia xenovorans LB400 5034.4935 8314.4225 4459.8975 104304115 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 3429.3895 3947.6619 9063.5495 10836.7966 4576.5848 99083061 nifH Nitrogen Nitrogen fixation uncultured bacterium 4991.7335 11038.4631 86605319 ureC Nitrogen Ammonification Synechococcus sp. JA-3-3Ab 5076.7484 5004.2393 84498489 arsB Metal Resistance Arsenic Janibacter sp. HTCC2649 5278.6799 5015.3630 121716444 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 7956.7160 6389.6684 6220.0414 4318.8486 6921.0242 9821.0812 8060.3913 5774.7506 94471133 narG Nitrogen Denitrification uncultured bacterium 4014.1467 5101.7311 57641944 czcD Metal Resistance Cadmium,Cobalt,Zinc Thermococcus kodakarensis KOD1 7932.7975 7458.0646 4093.7101 3645.0776 157679123 rubisco Carbon cycling Carbon fixation uncultured bacterium 22985.5926 23565.0697 35567.5886 43718.3998 5068.8956 9567.7295 15064.3458 13339.4374 9563.8389 10817.0401 13186.0734 12841.0460 110600625 ChrA Metal Resistance Chromium Geobacter sp. FRC-32 4411.3426 4426.8139 7369.0902 9795.7022 5832.7188 87200449 PobA Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 5358.9577 3872.7824 4570.1812 90954635 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4967.9856 4641.1755 6764.2014 90954569 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11638.1840 11780.8743 10848.1092 10176.8118 11100.5298 84516351 nagG Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 6401.4207 5508.5893 54023925 tfdA Organic Remediation Aromatics Chlorinated aromatics Nocardia farcinica IFM 10152 11613.1763 11419.1024 12787.8035 12124.1393 9558.3456 16248.7871 42484.8779 33421.6763 28733.2090 15053.4961 12860.1216 11437.3788 111020519 nitA Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 6863.3186 5100.5684 6213.0486 13517009 gyrB other category Phylogenetic marker marine CFB-group bacterium MBIC04447 11238.8526 7068.5015 5124.7434 118729447 czcA Metal Resistance Cadmium,Cobalt,Zinc Delftia acidovorans SPH-1 5007.3254 3991.5460 3926.6951 85707406 CopA Metal Resistance Copper Roseovarius sp. 217 12755.2149 13455.5933 3681.9922 3854.8924 7074.3492 18348.7919 5641.7981 73534359 nifH Nitrogen Nitrogen fixation uncultured bacterium 18554.5380 23887.5606 12800.3982 17763.0570 4906.8548 11486.2167 14957.2580 13578.7482 20474.3284 9320.1044 10367.0012 9364.0064 1244586 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus niger 6771.4872 6745.4355 6257.8789 4410.5579 111615430 ZntA Metal Resistance Zinc Verminephrobacter eiseniae EF01-2 7645.2060 6990.9175 4528.9577 3478.0597 120595860 atzC Organic Remediation Herbicides related compound Polaromonas naphthalenivorans CJ2 8463.0718 7799.0363 7963.8860 5977.5540 16693.6763 12102.5173 15183.2559 19205.8381 8473.9698 7356.2222 9095.1091 120595970 gyrB other category Phylogenetic marker Polaromonas naphthalenivorans CJ2 4139.2799 26453461 gyrB other category Phylogenetic marker Mycoplasma penetrans HF-2 7137.8579 6068.0800 12923.9446 10705.2874 5343.6746 82570859 amoA Nitrogen Nitrification uncultured crenarchaeote 4821.2010 6805.5972 4471.4383 9056.8345 17230.0628 14063.3383 13909.3686 9107.0752 7186.4721 8421.7573 72384275 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 6839.0532 6901.8877 115422620 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 13883.4619 11516.8981 9136.1542 35857.7791 10888.3986 11990.4581 38642.5926 17438.8465 46268.8536 34194.4110 28889.2364 52506.3037 13872675 alkB Organic Remediation Other Hydrocarbons Prauserella rugosa 3645.8337 3542.8949 83575217 CODH Carbon cycling Carbon fixation Rhodospirillum rubrum ATCC 11170 5424.9131 5103.0025 4698.8986 76875977 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudoalteromonas haloplanktis TAC125 4643.9055 4198.0562 5227.3381 12775.1362 2262.8692 11432.0398 9775.7522 4506.1167 88798320 ZntA Metal Resistance Zinc Reinekea sp. MED297 4026.9518 7669.2122 116743212 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7941.7818 5540.6256 119671772 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 10973.1119 7754.1906 11182.4350 10307.7882 3376.7958 6560.3668 14126.2536 15711.5576 7251.6682 111019219 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 5882.0993 5286.7248 6668.2547 17217.5778 21188.5142 20090.4233 8384.3286 8627.8946 18144.5852 24044.4320 56478449 bclA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 4607.8230 4988.1489 4633560 nosZ Nitrogen Denitrification uncultured bacterium 696W 4143.4058 3402.1256 5267.6063 5630.8958 8007.4358 9139.7599 56692275 nifH Nitrogen Nitrogen fixation Heliobacterium modesticaldum 4262.5675 91204897 TerC Metal Resistance Tellurium Rickettsia bellii RML369-C 13452.8239 6703.7481 21127.9384 68562736 FTHFS Carbon cycling Acetogenesis Rubrobacter xylanophilus DSM 9941 6192.1770 4879.2367 115379787 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 3724.2302 3822.6833 4970.7283 4216.9964 4713.0388 116049493 ZntA Metal Resistance Zinc Pseudomonas aeruginosa UCBPP-PA14 4442.3036 7392.6434 8138.1619 36342.3290 48531.4228 33547.0257 5472.5776 6149.7204 6614.0617 157145830 dmsA Organic Remediation Others Citrobacter koseri ATCC BAA-895 19056.0622 15240.0648 13999.4409 19462.9539 20871.4250 32910.4141 30952.6491 25643.2045 20395.0401 24241.6155 23777.9961 20784.6358 88710122 ZntA Metal Resistance Zinc Flavobacteriales bacterium HTCC2170 4591.1313 5965.1521 4088.7918 7401.5862 83017302 gyrB other category Phylogenetic marker Microbulbifer hydrolyticus 6084.1038 5523.6192 3633.8894 71383860 nasA Nitrogen Assimilatory N reduction uncultured bacterium 6528.0321 7080.7786 4902.5960 3698.6797 3242.9195 95133480 nrfA Nitrogen Dissimilatory N reduction Desulfuromonas acetoxidans DSM 684 3977.9380 8744.4001 11030.6069 10092.1291 15481.3366 114798897 czcA Metal Resistance Cadmium,Cobalt,Zinc Hyphomonas neptunium ATCC 15444 10909.7759 6966.4837 8956.6107 16650.5106 14377.9637 18803.3967 28361.0638 37817.5838 29095.6916 21388.2938 12004.6951 12858.2567 16412616 catB Organic Remediation Aromatics BTEX and related aromatics Listeria innocua 7780.1679 8489.9045 10726.1930 14159.0064 5607.1634 22246.5402 15753.4749 10270.7060 116626755 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 6962.2076 6166.4327 7645.4324 20869.3249 60112.2520 24038.7835 21197.2972 45169.5365 45773.9212 64260.0145 126731410 phn Organic Remediation Herbicides related compound Sagittula stellata E-37 27767.3926 5892.7335 7004.7303 9156.4638 22098.4024 26369.5758 58150.3148 22709.9293 49213.0889 19864.6920 81251657 nirS Nitrogen Denitrification uncultured organism 36129.9332 8522.8518 9936.6621 46448.9065 63814.8112 90113.4237 79698.9041 76878.6252 74722.5912 108607.6036 105436.8345 149182238 rubisco Carbon cycling Carbon fixation Bacillus sp. SG-1 6053.2586 6060.3980 11915.2806 3244.3323 8752.1302 13251.6236 3981.1114 149186135 linC Organic Remediation Pesticides related compound Erythrobacter sp. SD-21 4750.2257 3946.7467 4977.4033 6769.0044 116695290 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 4000.0028 6332.8733 37925835 nifH Nitrogen Nitrogen fixation uncultured bacterium 28458.2397 15047.5152 17792.5322 20940.1165 16544.9060 13793.9215 16613.8506 15241.4632 11481.4796 8903.1013 13996.5883 9111.6519 126661427 TerZ Metal Resistance Tellurium Cyanothece sp. CCY0110 19857.0712 5446.9885 7941.1545 63007.2171 53690.9861 55297.1812 23736.5255 43252.4046 72713.3788 51932.9990 121715065 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus clavatus NRRL 1 6839.7019 5686.2309 7766.1866 7984.3349 11104.0623 11132.3668 11175.8709 11385.0635 5674.6840 7555.9270 149824891 czcA Metal Resistance Cadmium,Cobalt,Zinc Limnobacter sp. MED105 20116.7376 18832.1382 23019.1115 42569.3299 14190.9229 13371.5794 4756.3388 8178.1783 9077.8533 9045.9561 33391309 nosZ Nitrogen Denitrification uncultured bacterium 5789.7735 5392.4183 6864.0594 5557.7617 9177.3904 7053.1927 146410039 mdlD Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 6470.8624 5264.0559 3835.9160 6689.1231 69246631 ArsC Metal Resistance Arsenic Enterococcus faecium DO 14917.3494 13997.4346 14654.2517 12514.8527 4772.6917 5619.3268 9889.8906 13515.1403 8616.8948 7421.8975 15458.8420 109454943 sox Sulphur Sulphur oxidation Roseobacter denitrificans OCh 114 4137.1663 5226.8726 17373.7181 76667400 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 7207.6406 6388.1229 6404.4799 99083157 nifH Nitrogen Nitrogen fixation uncultured bacterium 10230.2348 9750.5644 5754.9999 7635.9401 14773.4237 6464.2179 134101899 TerC Metal Resistance Tellurium Saccharopolyspora erythraea NRRL 2338 6646.3395 3235.7892 6884.8897 4877825 xylXY Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 6412.9628 7968.6683 3987.8741 7274.3270 44829093 nifH Nitrogen Nitrogen fixation uncultured bacterium 4147.8477 6392.1543 4170.7235 6121.5456 7756.9819 5853.1057 2353014 gyrB other category Phylogenetic marker Shewanella woodyi ATCC 51908 15309.0365 18127.1338 7824.0625 9445.5519 6069.4994 4075.0565 6738.9865 7550.4895 8076.8114 27378440 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 4045.5028 3157686 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 4954.5428 4985.5973 145320300 atzC Organic Remediation Herbicides related compound Enterobacter sp. 638 6570.9077 6435.1361 10706.3870 64702.9656 70727.9126 6096.4137 123443563 ArsC Metal Resistance Arsenic Yersinia enterocolitica subsp. enterocolitica 8081 5853.7156 5622.9947 80176.4528 80542.1315 32328.8703 23380.5032 36789.7711 30952.4093 126729627 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 3648.8266 6582.5046 156523540 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 4738.7531 4447.1745 8572.0655 5124.9258 10680.4800 21430.8305 66146.6839 56652.5004 157406237 sox Sulphur Sulphur oxidation Methylobacterium populi BJ001 6541.2267 5521.0207 6495.8348 3591.2267 7527.3937 8930.9323 7293.8677 6288.0483 28855646 CadA Metal Resistance Cadmium Pseudomonas syringae pv. tomato str. DC3000 5013.3605 8776.5803 14320.9521 4867.3098 9064.6409 44819.7035 13454.3730 19155.0184 11027.0857 7533.6615 93209558 dsrA Sulphur sulfite reductase Desulfomicrobium thermophilum 6580.4777 6173.8906 6641.5982 8022.6635 9334.9649 13809.9608 14113.1016 7618.2625 7328.2273 81193.0416 7745.7505 146403578 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 14623.2978 15111.6180 12463.7733 13231.4815 81096556 CopA Metal Resistance Copper Streptococcus suis 89/1591 5225.0736 86169581 gyrB other category Phylogenetic marker Weissella halotolerans 10048.1356 8777.0990 9792.5171 10771.3752 66048061 ZntA Metal Resistance Zinc Pseudomonas syringae pv. syringae B728a 6366.6690 4177.4159 4110.0778 42627730 catB Organic Remediation Aromatics BTEX and related aromatics Arthrobacter sp. BA-5-17 4308.6332 4872.9351 99036682 PobA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 16659.6534 11093.5565 39303.8322 84314.6954 27903.1836 62068.3346 71108.2544 96375.5722 77415.8694 74405.4561 42187.8336 83136.1299 6048994 xylG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. RP007 4172.7269 6315.9329 8254.6467 5565.1846 6460028 TerZ Metal Resistance Tellurium Deinococcus radiodurans R1 7177.5528 7263.9852 7598.6323 12292.3235 11667.0644 12692.5888 111036262 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida 5767.8598 6975.1547 4457.3723 8574.2862 121596146 TerC Metal Resistance Tellurium Acidovorax sp. JS42 7138.6046 6724.4927 15772.6116 28878.4032 36714.6666 11080.4884 15327.0652 13571.3898 118579305 czcD Metal Resistance Cadmium,Cobalt,Zinc Pelobacter propionicus DSM 2379 6469.5292 6240.8032 9323.7152 4717.0521 117578125 ppk Phosphorus Phosphorus utilization Gramella forsetii KT0803 8504.1492 4509.6924 4724.1371 7019623 czcD Metal Resistance Cadmium,Cobalt,Zinc Geobacillus stearothermophilus 24815.4060 13885.1693 7968.9598 11872.1495 5867.1353 29604256 CopA Metal Resistance Copper Streptomyces avermitilis MA-4680 4032.7772 3672.6416 5045.4499 118648765 nitA Organic Remediation Aromatics Other aromatics Burkholderia cenocepacia MC0-3 4803.9547 13242054 phtA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter keyseri 5365.7896 3764.9680 4101.6897 9953.9495 3360.4646 9473.7002 7697.1945 9330.6331 85668303 nreB Metal Resistance Nickel Roseovarius sp. 217 8554.3297 7239.8249 14842.9625 21949.4884 3560.3957 14303.5274 42526.1440 54635.3323 57435.7246 13865.9437 6474.6638 7327.5800 121609909 phn Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 8065.6299 8342.8067 12058.3529 9868.2187 8117.4534 14058.1988 7877.4782 7417.3626 7578.3683 77683937 ChrA Metal Resistance Chromium Alkaliphilus metalliredigenes QYMF 5361.0353 5049.0115 9118.7866 158447949 ChrA Metal Resistance Chromium Coprococcus eutactus ATCC 27759 4188.0778 7012.1967 19073918 rd Organic Remediation Chlorinated solvents Desulfitobacterium chlororespirans 20952.9684 13076.7630 25703.2873 43097.1103 5138.8550 20556.1966 11705.8576 15289.7876 17072.7619 10013.8265 90202964 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 5206.9608 4253.0489 12413.3510 20312.7571 24398.2362 10982.4605 12181.0840 18621.5111 14080.9462 17187.4976 49239849 ppk Phosphorus Phosphorus utilization Bartonella quintana str. Toulouse 6506.1425 5206.3689 4221.0410 4459.3767 50725018 phdJ Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. A4 13206.7904 10164.7013 11620.4170 17919.0074 8599.9873 19278.5651 29654.8188 20317.8439 22165.9452 16051.1344 31770.3545 28921991 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A 4185.5908 77543332 arhA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. MWW 3628.1933 4496.7831 62149130 nifH Nitrogen Nitrogen fixation uncultured bacterium 4209.8498 4832.3530 154252026 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 8844.7909 6820.6347 10002.1102 12604.3616 4056.9849 6416.3019 10059.7809 9345.7194 7231.8110 6660.2249 148474838 napA Nitrogen Dissimilatory N reduction uncultured bacterium 6492.8310 5607.0338 3258.0082 4592.8112 19260.7332 9183.0792 119505476 linB Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2080 7282.5796 7437.9440 7499.4006 9099.6202 4061.4169 4375.7976 9749.6182 10379.9402 8108.5052 5313.6812 6548.2478 5150.5979 84359810 endochitinase Carbon cycling Carbon degradataion Chitin Burkholderia dolosa AUO158 3714.1470 3889.2215 17966.4490 25844.1050 46308000 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8542.3747 9057.9100 7657.1102 4755.5845 5910.6267 148501343 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 5507.3190 5701.8997 4275.7841 5509.5565 10072.1442 9666.8237 6910.5777 26992063 SilA Metal Resistance Silver Pseudomonas putida KT2440 4244.3655 5219.8101 3762.6780 5217.4276 5390.1967 4634.8224 13517025 gyrB other category Phylogenetic marker marine CFB-group bacterium MBIC04458 3304.1821 3261.8672 158435201 atzA Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 18171.2320 15614.6422 27956.1319 22218.3549 9156.3923 26319.5868 48816.8927 13931.4388 23024.8925 36497.0503 15680.9028 46959.8302 119459477 vanA Carbon cycling Carbon degradataion Others marine gamma proteobacterium HTCC2080 5812.8093 5970.3989 3667.6121 5015.6039 4396.9611 3227.7483 152965005 ara Carbon cycling Carbon degradataion Hemicellulose Kineococcus radiotolerans SRS30216 5528.5445 6723.7649 5577.1179 50841271 alkK Organic Remediation Others Propionibacterium acnes KPA171202 7498.7607 7568.7418 5672.3658 157285608 napA Nitrogen Dissimilatory N reduction uncultured bacterium 4403.3093 5454.5903 89346327 pcc Carbon cycling Carbon fixation Rhodoferax ferrireducens DSM 15236 8148.2247 8331.8249 7344.3341 4262.5512 27355265 chnB Organic Remediation Other Hydrocarbons Bradyrhizobium japonicum USDA 110 8056.4893 9017.6548 7499.8499 110680036 dehH Organic Remediation Chlorinated solvents Roseobacter denitrificans OCh 114 27678.9194 34886.7351 11466.1725 18827.9205 11300.2525 7771.4806 6675.6530 10723.9450 89046651 trzN Organic Remediation Herbicides related compound Oceanicola granulosus HTCC2516 5614.3606 4100.3475 12611.1965 152977985 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Actinobacillus succinogenes 130Z 9923.3788 8765.8142 6902.1931 7293.6074 15827.8884 12551.7937 10155.3185 16114.8754 9650.2944 9687.2346 118473742 pcpB Organic Remediation Herbicides related compound Mycobacterium smegmatis str. MC2 155 5844.4790 5252.2724 10669.0478 3434.3861 77655372 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris BisB5 5091.3606 5634.2919 118071251 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Shewanella woodyi ATCC 51908 4552.9780 4762.9472 4561.5395 118719179 ChrA Metal Resistance Chromium Burkholderia multivorans ATCC 17616 3936.3322 4030.3701 154246624 PobA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 6388.8903 7924.3358 5692.0174 8815.7437 5706.1411 113945200 TerC Metal Resistance Tellurium Salinispora tropica CNB-440 7395.6084 5840.9404 11759.3623 20995.7906 10357.2381 4890.1649 8317.0542 154162660 trzE Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 4987.6605 4094.6862 4123.8606 146188565 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5068.9232 3986.9864 10844.1097 15632.7760 119641164 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 5587.1201 4519.3016 5914.7698 4322.3643 15391.8154 19068.1636 87331846 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 11254.7110 9751.9583 8602.8597 6236.2030 118069791 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 4416.9641 3724.6860 145221500 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK 6217.1390 3868.3613 11396.8030 13998.7686 8212.2064 15396.6087 56676.0525 50671.7397 8507.7905 8664.2779 9084.0206 73533831 nifH Nitrogen Nitrogen fixation uncultured bacterium 9362.8903 8384.0699 12459.3397 118462966 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium avium 104 4290.4606 3965.3128 3204.6420 5547.7612 34949.4762 14973.6597 17829.9182 4768.2842 76163896 atzA Organic Remediation Herbicides related compound Chloroflexus aurantiacus J-10-fl 4109.3450 120326031 czcD Metal Resistance Cadmium,Cobalt,Zinc Marinobacter aquaeolei VT8 7372.6586 6206.3100 5617.4443 3608.9527 15492.0901 17345.5537 110270775 ppx Phosphorus Phosphorus utilization Heliophilum fasciatum 12589.7123 11805.9988 7074.6265 7671.2928 8494.5250 7361.5863 6617.9281 7266.9785 156528074 amyA Carbon cycling Carbon degradataion Starch Vibrio harveyi ATCC BAA-1116 4323.8670 5129.6110 14556.9279 36912.1056 69495.8709 78224692 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter metallireducens GS-15 15058.4654 15452.8619 10761.2133 4331.7667 18076026 merP Metal Resistance Mercury Pseudomonas sp. 7814.9611 7842.3340 8220.6303 5344.3624 14484.6959 15305.3460 24212.1907 16330.6024 8039.5703 3157626 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 7001.5467 5570.7914 8023.7946 46519943 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 10742.8033 7516.5480 17119.7511 11508.0916 4064.8640 8998.8238 25799.5810 16588.9798 20695.2146 6690.2989 8078.3892 118049695 czcA Metal Resistance Cadmium,Cobalt,Zinc Comamonas testosteroni KF-1 11021.5560 12538.8586 5387.8751 9590.9025 33415333 nasA Nitrogen Assimilatory N reduction Rhodobacter capsulatus 5478.0265 4656.4190 3567.3856 6975.5754 4792.9619 8076.2627 90023293 mer Metal Resistance Mercury Saccharophagus degradans 2-40 9018.2726 8405.0736 6798.8586 72384789 CopA Metal Resistance Copper Haemophilus parasuis 4637.9815 3916.5665 67919998 ChrA Metal Resistance Chromium Crocosphaera watsonii WH 8501 4559.1973 5627.3970 25273.4895 23098272 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacillus iheyensis HTE831 5377.6990 3462.4895 85104727 amyA Carbon cycling Carbon degradataion Starch Neurospora crassa OR74A 6693.8701 10012.9252 9589.6051 10208.6713 115372537 linC Organic Remediation Pesticides related compound Stigmatella aurantiaca DW4/3-1 11492.8764 12679.1602 8023.6153 3387.8976 8867.4216 6716.8552 6571.2994 7038.1897 6261.3377 6065.6747 116073929 ZntA Metal Resistance Zinc Synechococcus sp. RS9916 8889.5398 8663.6890 6116.0516 10032.2810 5155.9994 4775.9540 36277.2614 33700.3413 5390.9005 12597.6091 10081.6680 85859609 FTHFS Carbon cycling Acetogenesis Syntrophus aciditrophicus SB 7479.6179 5933.1265 4246.6463 73762890 nirK Nitrogen Denitrification uncultured bacterium 4988.4996 4153.5976 14840.2167 5836.3889 27087.1526 25780.1568 55107.6436 56146.6022 26858.7154 5491.9806 9999.0089 112821411 czcC Metal Resistance Cadmium,Cobalt,Zinc Sphingomonas sp. KA1 11268.6323 12138.3456 11790.2862 3797.1098 4785.3282 89209970 gyrB other category Phylogenetic marker Halothermothrix orenii H 168 6449.8382 7773.3731 151248 dehH109 Organic Remediation Chlorinated solvents 4477.8026 9062.1905 94471271 narG Nitrogen Denitrification uncultured bacterium 4874.2977 5427.3246 5061.0917 3641.3272 11047.4858 7756.9229 10816.8330 5382.0544 6491.5109 146761195 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. CBS3 10727.3480 8146.7925 14621.9180 49648.1464 13462.2259 27721.1832 89673.9190 71001.2084 63745.3823 15367.8789 25954.2678 34427.4068 126032271 endochitinase Carbon cycling Carbon degradataion Chitin Hypocrea jecorina 4603.9955 3451.3529 126707722 vanA Carbon cycling Carbon degradataion Others Sagittula stellata E-37 9148.9976 21736.3911 35950.8836 9314.0147 10008.7998 10874.2004 4996796 gyrB other category Phylogenetic marker bacterium rM4 7577.0300 6367.4782 6754.9068 46401100 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Candidatus Protochlamydia amoebophila UWE25 9959.8911 10342.4190 8762.0646 14349.7303 4780.0146 26054.4506 19971.6525 6615.9061 6489.5058 2897667 nifH Nitrogen Nitrogen fixation Paenibacillus macerans 9308.8984 13715.4507 15172.5956 10290.9052 16958.3386 16633.3989 9041.7834 116265087 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 4511.1670 4534.0820 5656.9878 12767.1039 3738.5134 9925.1680 12844.4619 16974.4306 17530.0891 67523237 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 5516.9182 6125.8569 50954092 amyA Carbon cycling Carbon degradataion Starch Leifsonia xyli subsp. xyli str. CTCB07 7520.8364 5071.7932 9861.8143 5937.9779 11404.2590 16854.8052 24351.7484 21674.5061 11026.1794 9120.9199 10462.1879 145620304 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter bemidjiensis Bem 15818.2439 9501.2060 9406.0673 124005610 catB Organic Remediation Aromatics BTEX and related aromatics Microscilla marina ATCC 23134 4328.0414 3587.5745 4132.4783 4916.5796 6312.6077 4109.6888 115360324 BADH Organic Remediation Aromatics Other aromatics Burkholderia cepacia AMMD 7932.2706 5910.3172 124363426 CadA Metal Resistance Cadmium Methanocorpusculum labreanum Z 10369.6749 7801.7529 10224.9782 9559.8533 21886622 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Thauera sp. DNT-1 7994.3946 8924.5819 32030369 ppx Phosphorus Phosphorus utilization Haemophilus somnus 2336 16369.3817 5026.9003 7894.6202 26312.1541 15491.7878 25672.7148 69831.6202 55374.7942 52301.2441 40613.0285 34623.0312 54613.4231 118748889 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 26777.0604 30396.7041 23799.0313 46276.3244 4694.9498 7193.6092 17582.5156 18942.2629 13384.4703 11262.6739 13977.0700 7687.5298 62468052 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 14326.2322 5938.9024 4870.7325 21454.9923 16614.9128 55356.3870 31867.3203 48884.9810 29862.5737 46986.7495 51428.9021 99083393 nifH Nitrogen Nitrogen fixation uncultured bacterium 4413.6444 5640.9568 3999.9163 6152.4415 108463770 ppx Phosphorus Phosphorus utilization Myxococcus xanthus DK 1622 4148.0603 26596.1496 4223.4647 28542629 nirS Nitrogen Denitrification uncultured bacterium 5066.6117 4084.2867 57233678 hydrogenase Energy process Energy process Dehalococcoides ethenogenes 195 14777.3519 13735.5172 14554.4889 26679.7323 6537.4657 11772.2901 13755.7261 5481.9295 78102285 nifH Nitrogen Nitrogen fixation uncultured bacterium 14049.6561 16697.9673 6902.0075 10358.3640 4481.0241 4315.7278 6441.4517 6411.0764 6849.3096 27382949 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 4277.3551 5816.8996 83316708 nirK Nitrogen Denitrification uncultured bacterium 5585.8443 5543.7003 3682.7721 118719753 nitA Organic Remediation Aromatics Other aromatics Burkholderia multivorans ATCC 17616 4425.3037 3328.9296 12703.2271 8379.9298 14900.4326 17270.9324 15560.8972 4839.9464 67154438 proO Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP 5200.2215 6760.7380 14054.8347 8655.8936 9317.9491 156600794 nifH Nitrogen Nitrogen fixation uncultured bacterium 8317.4579 4837.5896 14472.3126 13516.2661 6301.1176 44066.8541 36082.4495 65495.3422 26567.5292 9701.7049 146405992 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. BTAi1 4648.3525 4983.6690 3341.2952 6964.3821 13425442 TerC Metal Resistance Tellurium Caulobacter crescentus CB15 4730.2622 5953.4824 14625.4702 16103.9634 8785.9998 12273.7354 7605.4999 10534.7053 73696800 amoA Nitrogen Nitrification uncultured crenarchaeote 7269.9283 6721.8476 9207.4927 6950.9662 109898865 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c 8233.4473 5961.7369 3365.0081 118032137 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 10484.6430 9783.1062 5720.5138 3071.2717 7295.3740 9404.9327 4944.1447 4939.6712 28900975 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio parahaemolyticus RIMD 2210633 5891.4014 6167.9087 5656.0764 116619148 gyrB other category Phylogenetic marker Solibacter usitatus Ellin6076 4972.8462 4325.5623 88919055 CopA Metal Resistance Copper Geobacter uraniumreducens Rf4 6893.6517 7949.6059 148255491 linB Organic Remediation Pesticides related compound Bradyrhizobium sp. BTAi1 5769.5540 23519.1477 23116.0340 6133.2144 8258.7398 38244.3637 23921.1516 89053717 ChrA Metal Resistance Chromium Jannaschia sp. CCS1 6897.5662 7280.3334 6096.3368 5281.8866 5803.1321 154684784 TerZ Metal Resistance Tellurium Bacillus amyloliquefaciens FZB42 6955.0757 5067.4909 2482.9572 145234081 BADH Organic Remediation Aromatics Other aromatics Aspergillus niger 4989.4798 3612.6946 13412.9556 3306.4774 4964.8274 8251.9466 55230681 ZntA Metal Resistance Zinc Haloarcula marismortui ATCC 43049 4081.1671 4105.2825 114308564 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrosomonas eutropha C71 6657.8593 4726.2514 2598.4965 11924.1219 12948.7165 4481.9743 7331.5076 10495.0496 7313.3296 118072724 cellobiase Carbon cycling Carbon degradataion Cellulose Shewanella woodyi ATCC 51908 11097.6637 7134.2735 40633.4030 31255.6794 9428.3306 18549.2372 75859124 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus nidulans FGSC A4 5340.0498 5648.2969 6757.0857 113935746 xylanase Carbon cycling Carbon degradataion Hemicellulose Caulobacter sp. K31 5942.8486 6041.7185 8257.7221 9257.1671 40458.5010 40742599 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 4435.7759 5831.7738 112800673 ZitB Metal Resistance Zinc Campylobacter concisus 13826 7620.8064 7792.2472 48700.3958 53137.7893 65583.2303 56379084 amyA Carbon cycling Carbon degradataion Starch Geobacillus kaustophilus HTA426 5347.3040 4434.7429 3516.6910 10519.5106 84684763 ChrA Metal Resistance Chromium Rhodobacterales bacterium HTCC2654 5453.7528 3668.8497 6255.6977 10863129 nifH Nitrogen Nitrogen fixation lactate SRB-Enrichment culture clone HBLac1 15797.3881 24488.0402 22265.7891 36429.4605 3124.9136 4213.2947 10382.8284 7317.6812 5153.9669 118669130 ChrA Metal Resistance Chromium Delftia acidovorans SPH-1 4544.1738 4531.2894 4467.2553 8154.9855 11508.9422 48306 amyA Carbon cycling Carbon degradataion Starch unidentified bacterium 5361.3331 5906.1146 5042.4536 19909549 gyrB other category Phylogenetic marker Mycoplana dimorpha 6666.9396 5099.2286 6380.7589 4368.7368 8690.8133 14801.2553 18148.9860 11584.8587 12160.1083 6519.7271 46199494 pcc Carbon cycling Carbon fixation Thermus thermophilus HB27 7054.4806 5864.6259 4925.2021 9577.6901 83576489 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 6689.3557 6953.8587 10269.5070 3822.5194 27348472 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 7606.5145 7191.7355 35012.1491 5548.8533 48759.7857 59142.6387 43046.7181 33652.9302 30679.2078 115376797 xylG Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 4493.6730 87119397 linB Organic Remediation Pesticides related compound Marinomonas sp. MED121 16325.8617 14429.2443 5334.2773 84499194 linB Organic Remediation Pesticides related compound Oceanicola batsensis HTCC2597 6022.7198 9058.8840 3434.4241 5525.7559 7293.3204 5142.4666 8031.3563 21242039 ara Carbon cycling Carbon degradataion Hemicellulose Xanthomonas axonopodis pv. citri str. 306 7609.1996 5153.3877 6724.3692 3192.1079 9305.0063 7485.7967 151574 pheA Organic Remediation Aromatics Other aromatics 8980.0190 6784.1417 2686.4515 118053504 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 7412.6483 8001.6930 20889.4681 4375.5509 32964.6041 28383.4168 4678.3683 6454.4969 9437.4016 83944274 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 5478.0914 6746.1084 34426.4968 7725.5966 18758.8356 54302010 dmsA Organic Remediation Others Photobacterium profundum SS9 16413.0442 11737.0532 20212.4549 18453.1553 43876.9272 58289.5664 73186.2355 66043.0888 60436.4656 61769.2872 45431.5814 34912.3850 151578 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. 5284.1146 4387.8290 2965.5496 8359.5181 126575022 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Algoriphagus sp. PR1 9932.3470 8490.9773 5132.9253 10547.1472 19070147 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5503.9160 7820.0057 6039.5853 5299.2164 126707782 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 5229.6061 4657.6046 118424527 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7567.0946 6690.0384 10780.9320 5650.8558 8132.1202 18378.2369 29195.3226 43034.0337 7964.0622 94311454 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 4505.8943 6285.9635 71159022 Xamo Organic Remediation Other Hydrocarbons Nocardioides sp. JS614 6319.3345 5622.7267 4702.9729 5976.5067 118019751 akbF Organic Remediation Aromatics BTEX and related aromatics Serratia proteamaculans 568 7110.1173 7992.6192 34494851 ureC Nitrogen Ammonification Haloarcula aidinensis 9255.6098 5065.4945 17775.9817 19918.2637 17223.6599 11079.5143 13173.8186 7714.6605 8830.2204 146405349 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 3625.5156 110347229 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 3801.2539 2196830 gyrB other category Phylogenetic marker Shewanella algae 14646.0158 16678.3469 9991.7503 9319.6341 6864.5815 18314.5962 9392.2603 6360.4026 10418.3843 7376.9038 7576.9010 83593491 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 9651.4649 14410.7735 18496.3969 21044.2909 14856.7851 39342.1667 58223.2584 78397.1854 70190.1786 32648.9926 30249.2731 35249.4745 3157722 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 13097.6067 6522.7039 15047.1579 10558.8329 118504792 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 5292.4153 4725.6298 8774.0293 8816.8751 2883.8238 158436970 trzN Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 13806.8311 11533.2867 17577.8046 35527.7032 22833.7693 22722.0192 66428.2028 18223.0239 28538.0617 27383.9202 11606.7342 30998.0542 83764473 ZntA Metal Resistance Zinc Aspergillus oryzae 10168.3991 11819.3721 5544.9481 9153.5681 3926.0155 8225.4080 4477.5014 7457.2270 6543.2140 108460873 endochitinase Carbon cycling Carbon degradataion Chitin Myxococcus xanthus DK 1622 13626.8306 6905.5566 18185.1393 18229.1323 20901.8870 33739.1918 29444.1600 51673.5620 40060.4237 99030642 ppk Phosphorus Phosphorus utilization uncultured bacterium 3696.9495 4416.3891 19658.2475 6953.7518 24565.0238 55331.6369 77956.7516 54708.3832 26795.0957 8885.5397 82744605 amyA Carbon cycling Carbon degradataion Starch Clostridium beijerincki NCIMB 8052 5824.6029 4732.0726 154240614 mcrA Carbon cycling Methane Methane production uncultured Methanobacteriales archaeon 3453.2723 4718.1120 6026.9376 6462.3917 146190249 cytochrome Energy process Energy process Bradyrhizobium sp. ORS278 9529.8074 7675.3613 7434.6413 11101.9200 11953.4256 16918.9038 24337.7438 22343.9203 16898.0374 14867.9075 9729.1530 12016.9162 83816198 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Salinibacter ruber DSM 13855 3503.1759 62529086 nifH Nitrogen Nitrogen fixation gamma Proteobacterium BAL286 6512.9803 6538.7016 3810.1736 82791421 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 5974.9622 4295.5998 8976.9841 77974342 amyA Carbon cycling Carbon degradataion Starch Yersinia frederiksenii ATCC 33641 6063.0624 6148.7396 12909.4385 14044.9294 16262.9850 94414962 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas aeruginosa PA7 10319.3490 9381.2226 8829.1571 7710.9777 57016825 CopA Metal Resistance Copper Campylobacter upsaliensis RM3195 10584.0393 10301.8628 8264.4345 14357.0423 10143.5390 17457.8168 36063.6069 50756.1384 24951.7867 17034.8334 9997.7975 9082.7588 114548970 mer Metal Resistance Mercury alpha proteobacterium HTCC2255 29259.0164 33373.7981 14960.5303 18315.3699 8516.3069 12275.8335 13994.0759 9845.8070 7150.7645 16614.4853 13397.3904 13286.5264 145591430 dsrB Sulphur sulfite reductase Pyrobaculum arsenaticum DSM 13514 7227.9627 6304.4461 56891.4280 3591.3566 8939.8311 32929.3788 42415.9758 33846.3026 12145.9693 120403007 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 5184.7163 4765.4033 90420336 trzN Organic Remediation Herbicides related compound Aurantimonas sp. SI85-9A1 4533.3879 4186.1772 115376492 xylA Carbon cycling Carbon degradataion Hemicellulose Stigmatella aurantiaca DW4/3-1 31321.2029 10870.7061 10396.8222 18958172 hdnO Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter oxydans 5291.6958 5422.9005 51870942 endochitinase Carbon cycling Carbon degradataion Chitin Rhodothermus marinus 9822.6196 9378.9900 2965.5205 5079.9300 126035159 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 5219.8117 32855.7781 37784565 gyrB other category Phylogenetic marker Candidatus Hemobacterium ranarum 8129.9677 5234.7508 6575.5486 9935.5817 28853408 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. tomato str. DC3000 4138.5666 4268.3334 150399896 nifH Nitrogen Nitrogen fixation Methanococcus vannielii SB 3594.8708 4165.0423 6953.3611 11777.5236 10279.1527 149360104 AmiE Organic Remediation Aromatics Other aromatics Marinobacter algicola DG893 3740.4894 4024.3453 12507.3653 3262.3346 6276.7496 147668770 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 9276.9049 7225.8637 3157.5695 118667820 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 4593.9140 13483.1167 14969.3247 4978.4858 13488.3484 28587.5567 46687.9038 48808.0530 19798.2946 18616.4810 77456903 trzN Organic Remediation Herbicides related compound Pseudomonas fluorescens PfO-1 12324.9850 5349.0804 20751.3284 25493.8006 24657.2314 20390.4802 32209.2159 33434.3453 9719.5381 29456.9506 154156025 chnB Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 4824.0085 144945974 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem 4455.9180 4188.3243 3720.9025 119369934 gyrB other category Phylogenetic marker uncultured bacterium 7650.8417 6349.1159 9814.3013 70607994 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus acidocaldarius DSM 639 5391.7846 2905610 gyrB other category Phylogenetic marker Shewanella pealeana 8672.6417 7958.8225 4468.1738 13375.7581 5905.4810 12155.2535 19823.2653 18729.9471 11093.5021 12771.8342 16205.6292 12659186 nifH Nitrogen Nitrogen fixation Treponema denticola 9688.1123 7228.0273 6465.3842 3302.8086 8205.6916 19356.5304 10378.8746 26078.4532 8296.1123 6114.8813 6292.6746 91782272 cymC Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 5541.5638 5423.2158 8038.9352 14423.6615 13495.1678 13436.8528 108772637 scnABC Organic Remediation Others Mycobacterium sp. MCS 4580.3419 4443.0252 3141.4545 10096.0848 71915204 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Thermobifida fusca YX 4183.0293 5872.8346 4700.6587 49482927 ZntA Metal Resistance Zinc Staphylococcus aureus subsp. aureus MRSA252 6506.4733 4379.2849 4404.8840 10671.9431 27126.2612 113529725 phn Organic Remediation Herbicides related compound Ralstonia eutropha H16 4317.2674 4295.7422 121551813 proO Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 4001.2353 4598.9579 62003537 narG Nitrogen Denitrification uncultured bacterium 3903.2264 6103.8439 126727625 pcaG Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2150 5063.3920 3865.0535 5995.8828 45386179 narG Nitrogen Denitrification unidentified bacterium 5325.1915 6062.0764 12292.9311 24303.6030 8920.0596 6252.9057 7377.6710 154252232 chnB Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 11857.2661 8824.8569 6619.2873 16767.4243 6327.1570 14574.3236 7934.5922 75817278 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio cholerae V52 4232.3136 149371314 pcc Carbon cycling Carbon fixation unidentified eubacterium SCB49 3606.3101 4371.0822 7268.4537 15335.2201 29653.4192 20258.2409 121553944 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 4904.1736 5098.7929 2943.1940 7217.9652 33515.6145 85539.0737 10733.4646 10846.9817 86152755 nrfA Nitrogen Dissimilatory N reduction Campylobacter jejuni subsp. jejuni HB93-13 6598.0783 4462.8467 17688.0955 25508.2979 31357.4895 16138.1303 31764.1024 30736.1692 15741.5020 43871.9621 158312372 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec 13201.2339 23545.2830 16003.0989 15929.8855 8809.8594 19836.4577 13836.8176 9570.8795 145218965 sox Sulphur Sulphur oxidation Prosthecochloris vibrioformis DSM 265 14226.0636 5327.6647 4454.3590 27173.2615 17572.6731 45533.5869 35655.2034 45404.3268 23511.6369 24289.8644 89099726 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. NRRL B-14911 8207.3903 5489.7945 9176.7184 14489.4450 29639.0878 31640.9354 18705.1709 21736.4952 10655.8900 11118.5726 18334.8844 83317102 nirK Nitrogen Denitrification uncultured bacterium 5109.5175 116013320 nirS Nitrogen Denitrification uncultured bacterium 8159.3839 7372.9358 5209.0261 15335.9543 5008.4318 5422.6173 13963.1385 94309225 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 12974.1551 5777.1938 8367.0701 18099.4181 19326.8160 72976.3492 38072.2485 34533.6164 25852.6174 34754.3559 81429037 CopA Metal Resistance Copper Lactobacillus sakei subsp. sakei 23K 4935.6389 3740.1149 152997917 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 15942.4509 14407.1281 6987.4937 27117.8820 28791.6565 126665532 linB Organic Remediation Pesticides related compound Marinobacter sp. ELB17 8946.9418 6512.3592 15076977 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. JR1 8788.6310 7847.3844 150014349 nifH Nitrogen Nitrogen fixation Methanococcus aeolicus Nankai-3 5669.9606 7827.8750 8785.3202 23402.7362 26102.2815 12698.4095 40390.0565 11234.5910 21518.4762 16679.4116 19695.7685 28216.5972 144944774 silC Metal Resistance Silver Geobacter bemidjiensis Bem 5572.6981 6655.9670 4370.6129 94310675 silC Metal Resistance Silver Ralstonia metallidurans CH34 7289.3125 7607.2465 7207.5394 3401.1948 7236.2465 11715.7543 7596.0258 6063.4142 6750.1239 54297175 scnABC Organic Remediation Others Legionella pneumophila str. Paris 8838.3674 8402.7768 5121.2406 99030609 ppk Phosphorus Phosphorus utilization uncultured bacterium 3571.1073 6031.9590 5985.3014 151585111 atzA Organic Remediation Herbicides related compound Halorubrum lacusprofundi ATCC 49239 4289.7611 5644.2668 4078.7573 118736884 ChrA Metal Resistance Chromium Dinoroseobacter shibae DFL 12 6392.9256 5293.1562 6763.4250 99083269 nifH Nitrogen Nitrogen fixation uncultured bacterium 8435.0276 8177.1045 5265.8714 113129062 endochitinase Carbon cycling Carbon degradataion Chitin Hypocrea virens 14915.4484 16800.5619 12992.5478 13264.4999 4633.4364 8481.2471 15529.4051 16808.9961 12671.4356 10595.5699 8049.3695 6049.1100 73540593 trzN Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 4568.7071 5462.3984 90954583 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 10291.5890 19737.7978 12230.3172 14983.1283 3969.5662 6486.3112 5665.6755 4833.0451 3378434 nahF Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans 7400.3809 5131.2981 6497.2438 4508.1365 13472245 CopA Metal Resistance Copper Mesorhizobium loti MAFF303099 3963.5788 6215.2844 4560.0304 3180.8625 84711500 ChrA Metal Resistance Chromium Polaromonas naphthalenivorans CJ2 85233.4296 71925.6424 41599.1523 53419.2809 61585.9682 74734.1338 71473.8418 88977.3469 52931.3114 90261.6068 90992.1056 47462.4974 145048145 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 15544.6252 8677.6579 6466.9798 66845524 endoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus fumigatus Af293 11598.8958 4782.3840 18716.7182 28775.8205 17616.8392 18836.5355 77096.2137 72041.3963 83215.5703 11977.2418 10338.5792 14554.0838 89347395 pcc Carbon cycling Carbon fixation Rhodoferax ferrireducens DSM 15236 13749.5449 9255.4981 15482.1413 23778.5709 4637.5853 19916.9737 43437.0687 73287.3323 71793.2577 17725.3134 14366.2880 23000.8527 82716671 oxdB Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 4973.5102 5347.6689 17790.0664 10272.7478 22676.4115 68274.5962 9919.4085 26962.0358 23840.3475 17130.1658 19508.3901 15074184 cytochrome Energy process Energy process Sinorhizobium meliloti 5140.0134 5190.0593 7112.4280 6645.8810 19667.8056 14737.1387 14365.2970 11061.2810 6001.5235 15827.6094 15514.1834 119225912 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 6007.8510 7728.1125 149370135 pcc Carbon cycling Carbon fixation unidentified eubacterium SCB49 9075.2501 8010.5510 3828.3758 118715779 czcD Metal Resistance Cadmium,Cobalt,Zinc Burkholderia multivorans ATCC 17616 4445.0615 9800.0328 3732.8123 15052.7459 39074.0917 26162.2699 37536.9866 3350.3409 77698229 nosZ Nitrogen Denitrification Rhodopseudomonas palustris BisA53 10029.1059 8867.0615 4154.3794 119504470 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 5190.2788 3952.8717 13363.8307 15439.2030 71028.8703 12135.9488 6233.3194 7843.9957 11793.1101 6275.2411 66847744 vdh Carbon cycling Carbon degradataion Others Aspergillus fumigatus Af293 4791.4939 3657.5898 118669094 nmoA Organic Remediation Aromatics Nitoaromatics Delftia acidovorans SPH-1 11153.6087 9723.5891 4358.2671 118701835 nagK Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 8358.6636 10028.5042 7706.5338 13375.1938 7867.2557 7792.4230 4460.4778 84689769 nitA Organic Remediation Aromatics Other aromatics Parvularcula bermudensis HTCC2503 4713.1524 4866.2118 6682.0444 5035.4855 7933.9767 4999.6209 6215.4877 149902136 dsrA Sulphur sulfite reductase Clostridium beijerinckii NCIMB 8052 8514.3051 8094.2293 11882.5763 14112.2800 146276053 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 7296.0927 7052.4981 6146.2530 6481.9192 9263.1076 5378.7001 119899246 CopA Metal Resistance Copper Azoarcus sp. BH72 5668.8080 16356.8939 11004.5072 15440.9466 9477.1495 8393.0672 7537.8130 9189.4646 7020.0627 153004092 CopA Metal Resistance Copper Anaeromyxobacter sp. Fw109-5 7895.6990 8422.5175 8000.7691 4837.3660 8219.4394 9230.4493 6185.9292 6622.9665 116621051 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 6873.3511 5971.1175 12675.6472 7799.5168 4961.6630 6409.9616 5794.5196 8389.0507 6232.6875 115423534 silC Metal Resistance Silver Bordetella avium 197N 5206.8638 4231.7927 83840956 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 5662.0759 7373.2551 5488.7741 62468072 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 3963.9638 28348.6026 73661133 nrfA Nitrogen Dissimilatory N reduction Thioalkalivibrio nitratireducens 8178.9254 7334.3289 5370.9311 21646979 sox Sulphur Sulphur oxidation Chlorobium tepidum TLS 9672.4575 10598.9546 6437.5586 7352.0021 4473.5869 11734.8490 5503.1395 7555.9508 154161986 CadA Metal Resistance Cadmium Xanthobacter autotrophicus Py2 6462.9778 4720.6099 8754.4781 3954.4810 7560.8121 12043.5906 16587.6404 8783.6136 5859.1929 119962703 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 4972.3296 4157.3861 5756.9423 15350.6576 21348.6546 59914.0570 13367.6767 34679.4323 7042.2339 6442.8299 12325.2937 88863487 nbaC Organic Remediation Aromatics Nitoaromatics Jannaschia sp. CCS1 18007.3079 17128.8550 9772.0950 18765.9466 3899.1505 8995.6003 29358.5530 19323.0595 25122.2347 11440.5875 8461.8938 10799.8613 89055554 rubisco Carbon cycling Carbon fixation Jannaschia sp. CCS1 3446.7057 3477.4799 9089.0467 11445.1209 37925731 nifH Nitrogen Nitrogen fixation uncultured bacterium 5682.2381 4625.8592 4425.1447 3880.7675 7051.7713 9786.0809 7519.4650 6166.4231 108764320 atzC Organic Remediation Herbicides related compound Rubrobacter xylanophilus DSM 9941 8668.3000 7016.4851 4576.6850 8417.0122 46499.1462 10272.3262 8713.5732 11845.1441 11643.9772 84391488 czcD Metal Resistance Cadmium,Cobalt,Zinc Oceanicola batsensis HTCC2597 26825.1794 17336.9100 5508.0940 25449.2255 19066.8843 5343.2738 27600.7720 22956.9273 13921.2500 82798482 gyrB other category Phylogenetic marker Acholeplasma cavigenitalium 15921.2423 17618.6812 13913.2920 12080.4629 5430.4720 13159.5420 13589.8988 5380.6505 5515.4502 7301.7526 11083.2246 89334795 atzA Organic Remediation Herbicides related compound Desulfitobacterium hafniense Y51 5009.2958 82716357 czcD Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas putida F1 4903.8872 3821.3904 78513097 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 4733.6289 8807.6623 60547.0094 49391.8137 22492.9663 38264.2606 6648.8725 17671.5249 25718.0216 121543059 mer Metal Resistance Mercury Candidatus Desulfococcus oleovorans Hxd3 9767.9300 7165.9359 11662.8022 13258.7554 9961.4990 17092.5784 20454.3607 17857.9652 11406.8441 7430.9650 5604.5131 6681.3899 89512372 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4114.9833 5582.8840 82724314 endochitinase Carbon cycling Carbon degradataion Chitin Clostridium beijerincki NCIMB 8052 16982.1261 15955.8007 10675.9473 10362.4171 5233.6801 10236.6101 8645.5688 6369.4447 12264.0639 148260132 czcD Metal Resistance Cadmium,Cobalt,Zinc Acidiphilium cryptum JF-5 8986.2887 7184.5670 5012.1013 7513.4163 15044.3070 7486.4522 68164680 nirS Nitrogen Denitrification uncultured bacterium 11970.3950 11079.5761 3904.1118 17821.2706 5040.6619 9004.5926 8184.9986 68239849 czcD Metal Resistance Cadmium,Cobalt,Zinc Prosthecochloris aestuarii DSM 271 5318.0018 5208.3649 119378072 phn Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 4153.1430 4740.8734 2241.6126 3114668 phn Organic Remediation Herbicides related compound Pseudomonas stutzeri 11066.7850 14494.0274 9683.7106 10141.9808 4637.1942 8692.4967 5290.4236 5498.5171 2588986 phdK Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. 8689.0675 5845.0587 3222.8989 18313568 ZntA Metal Resistance Zinc Pyrobaculum aerophilum str. IM2 6099.1774 6458.2563 5317.1711 9745.2332 5949.7762 7956.0737 8162.6856 118705772 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 9089.8804 11573.6980 8394.8372 4280.8157 118672084 nhh Organic Remediation Aromatics Nitoaromatics Dinoroseobacter shibae DFL 12 7099.0468 5593.3083 5110.1763 11578.4219 18601.2303 17338.3267 11937.2473 10823.0432 8647.0606 9438.8864 54027279 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 4554.5392 2422.0947 3750.3049 118663878 endochitinase Carbon cycling Carbon degradataion Chitin Clostridium cellulolyticum H10 11700.6170 11411.1822 11283.4624 18515.3555 7065.2137 114190027 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 14640.0657 15061.1633 12433.9769 12075.1414 8679.8294 17140.6384 19795.8446 13584.4969 13050.3360 19347.0823 14954.6646 14361.7394 83318864 nirS Nitrogen Denitrification uncultured bacterium 4324.9691 5464.1453 3042.0071 4238.4118 9037.2790 5271.1215 94310275 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 4782.8260 4494.8979 20520730 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 6591.1071 6732.0169 7466.1688 11261.7537 17364.8436 19902.8754 5896.6172 11523.1820 88775986 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Reinekea sp. MED297 7414.9359 8270.1844 6547.1210 56130717 pbrD Metal Resistance Lead Ralstonia metallidurans CH34 12628.4011 13742.7560 9175.7428 7916.5634 5260.2314 5029.7233 6955.6635 6564.1786 109639784 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfitobacterium hafniense DCB-2 4978.8005 4745.3128 3153.2503 82742567 CopA Metal Resistance Copper Shewanella sp. W3-18-1 5570.4281 5267.5034 4010.3230 76577396 nirS Nitrogen Denitrification uncultured bacterium 3954.3290 3688.0440 5412.8126 4754.6606 5285.0630 14715450 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 4636.2711 5472.2890 110669570 cytochrome Energy process Energy process Haloquadratum walsbyi DSM 16790 5540.3358 5195.4833 118730373 ArsC Metal Resistance Arsenic Delftia acidovorans SPH-1 6710.8480 5145.5014 17513.1408 3365.7074 6165.0549 17469.8735 28085.0353 31812.5986 3719.7090 46409941 nirK Nitrogen Denitrification uncultured bacterium 6769.3024 4603.2764 8429.4095 7817.6149 12715.3065 39000.8235 27804.2926 9216.9473 11804.5440 152146333 mer Metal Resistance Mercury Beggiatoa sp. SS 11431.3883 13292.5026 14054.7463 23434.9755 5328.0203 144899226 czcD Metal Resistance Cadmium,Cobalt,Zinc Magnetospirillum gryphiswaldense MSR-1 6912.1717 5154.0748 8442.1529 5837.1516 26933.8419 36327.5265 40656.5635 14555.7890 13844.3287 21701.2543 9647.4507 3378678 hydrogenase Energy process Energy process Rhodobacter sphaeroides 4719.7319 6987.7804 5390.5170 5084.4026 15023816 endoglucanase Carbon cycling Carbon degradataion Cellulose Clostridium acetobutylicum ATCC 824 8690.6036 9872.8272 5704.7616 8606.7959 3681.6083 32833.7761 147829487 phn Organic Remediation Herbicides related compound Clavibacter michiganensis subsp. michiganensis NCPPB 382 8874.9379 5944.8023 6774.0991 7314.2993 8353.9917 13582.7039 9761.2082 13906.6999 5738.7168 12740.7672 6892.0409 113460778 TerD Metal Resistance Tellurium Haemophilus somnus 129PT 28676.9673 8637.5586 9266.0903 32366.4565 23593.5025 27656.7966 95757.1023 65173.0943 70900.7519 25770.2886 45977.3496 56347.6203 152970595 ChrA Metal Resistance Chromium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 8637.7437 7768.1230 13385.4883 12624.0202 113733254 vanA Carbon cycling Carbon degradataion Others Caulobacter sp. K31 4464.2293 3836.0608 4613.2301 4406087 tfdB Organic Remediation Aromatics Chlorinated aromatics Alcaligenes sp. JD17 11390.8115 6685.6802 6962.3025 17877.0151 6079.2346 16295.4125 13831.2768 83017270 gyrB other category Phylogenetic marker Microbulbifer sp. MBIC03330 5827.8746 6917.6133 68230042 xylanase Carbon cycling Carbon degradataion Hemicellulose Frankia sp. EAN1pec 13611.1141 9614.2614 6112.5395 4348.7276 2983586 CueO Metal Resistance Copper Aquifex aeolicus VF5 17333.4765 11201.9618 10052.1152 13004.3301 22364.3069 3944.6534 4841.9425 84392406 ZntA Metal Resistance Zinc Oceanicola batsensis HTCC2597 8570.8177 8679.5056 5553.8578 15741.0164 12539.4900 53728257 ZntA Metal Resistance Zinc Haemophilus somnus 2336 9360.1513 7425.4858 4448.9029 88182477 tftH Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 10686.3943 13068.9103 7681.4778 85474.7475 61716.9382 66067.5743 26620.1945 20228.7199 37234.7668 49981.9570 153797773 CopA Metal Resistance Copper Actinomyces odontolyticus ATCC 17982 7303.4001 5329.3733 10392.5590 7001.5365 19445.9532 6986.2831 6752.9937 126703567 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 3852.1343 7031.1571 26678.1674 22716.7026 15914.9014 9841.3281 50123272 ZntA Metal Resistance Zinc Erwinia carotovora subsp. atroseptica SCRI1043 4469.9998 121998984 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Halorhodospira halophila SL1 6670.7279 6184.5230 5942.5393 5970.3361 6562.2898 12251.1676 7704.4319 5945.9318 7380.6338 5814.1717 116741609 arsB Metal Resistance Arsenic Listeria welshimeri serovar 6b str. SLCC5334 6970.6602 4638.9604 7819.3798 83972352 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 5115.5635 21183.0976 29488.6544 33113.6287 13871.5383 36119.6756 16138.4215 145322744 catB Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans DSM 12444 5104.5666 4278.0529 5094.2447 3489.0011 8567.2557 8794.2105 3716.1860 89201527 ZntA Metal Resistance Zinc Bacillus cereus subsp. cytotoxis NVH 391-98 9731.9079 10090.6781 3386.9506 3157562 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 8249.6534 6917.1107 5168.0293 12745.9792 20712.1204 5829.1188 110680817 dmsA Organic Remediation Others Roseobacter denitrificans OCh 114 5103.0517 4227.6498 81296437 Xamo Organic Remediation Other Hydrocarbons Mycobacterium chubuense 4187.8187 3877.0599 110630580 nifH Nitrogen Nitrogen fixation uncultured soil bacterium 4088.0098 4437.3726 4037.7779 10579801 mer Metal Resistance Mercury Halobacterium sp. NRC-1 9624.8179 9128.9262 9444.1864 6096.1038 86280115 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 4426.4551 5775.2508 7981.5882 7912.6079 83576143 ZntA Metal Resistance Zinc Rhodospirillum rubrum ATCC 11170 5794.7775 5137.1861 4497.7198 4831.6202 33415335 ChrA Metal Resistance Chromium Rhodobacter capsulatus 7410.5805 9203.5931 9300.1504 95114212 alkB Organic Remediation Other Hydrocarbons Gordonia sp. Cg 20298.3049 22824.7080 13326.5345 15031.4099 14721.7894 22312.6156 25149.3210 18401.4502 12577.6798 13786.1865 11538.7175 9810.3890 66045492 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. syringae B728a 46294.7825 19981.6949 7065.2549 21229.2798 32179.3653 87056.4643 135719.3438 124229.2571 88160.2805 100132.9645 147530.3103 158823.8578 154299891 CopA Metal Resistance Copper Botryotinia fuckeliana B05.10 6964.6556 10210.5578 1408294 BADH Organic Remediation Aromatics Other aromatics Acinetobacter calcoaceticus 4969.0970 7324.9263 158331243 trzN Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 5779.9827 5146.2589 11398.1737 7883.4284 8436.7700 9635.2677 5403.7801 70985925 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 7668.6860 7159.7104 8333.4121 8639.4670 121711319 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 7726.8089 5569.4145 6404.1246 16560.0909 7626.2580 16280.1660 8340.4901 9301.1914 10253.1011 8601.5615 9498.9805 77637901 CopA Metal Resistance Copper Alkaliphilus metalliredigenes QYMF 22588.3428 21543.3513 12289.2405 30264.8523 4796.4934 17766.1292 40084.2387 26866.6934 33400.3718 30743.8283 14417.4504 33355.3954 29605259 catechol_B Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 3989.7373 154161419 czcA Metal Resistance Cadmium,Cobalt,Zinc Xanthobacter autotrophicus Py2 22298.7563 11757.7898 11220.4587 69289587 adpB Organic Remediation Pesticides related compound Kineococcus radiotolerans SRS30216 8941.0295 6466.4113 7052.2792 8940.0649 5755.0547 11811.9303 15069.7239 6439.6384 6889.2415 4828.6533 46448394 TerC Metal Resistance Tellurium Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 15963.6356 15046.4968 8632.1003 9074.3193 4559.8942 12565.0899 10685.1754 12060.9424 13845.9196 8666.2372 9611.0487 10394.5017 157409956 ArsC Metal Resistance Arsenic Methylobacterium populi BJ001 4573.2896 4055.2730 10824.2118 46857.9309 3080.9647 8393.4256 15086.9442 12833.6320 151562936 pcaG Organic Remediation Aromatics Other aromatics Ochrobactrum anthropi ATCC 49188 5897.1812 6801.9886 15622.2002 9213.3050 15496.6441 13280.3772 5687.3924 11454.5145 6809.5504 7611.8631 1255504 nifH Nitrogen Nitrogen fixation unidentified bacterium 6846.3886 5615.9938 4609.0523 2196828 gyrB other category Phylogenetic marker Shewanella algae 5648.2951 4874.6250 3048.1814 4922.3711 99083245 nifH Nitrogen Nitrogen fixation uncultured bacterium 10410.5015 8068.4990 7414.6831 85091600 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A 9384.6734 6398.9128 12035.9476 10634.4469 6133.4453 8922.7226 14797.8443 18068.5076 13433.2736 7972.9029 7593.1706 8168.5793 119434078 nphA Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. JS443 7873.2679 6720.7185 13918.2965 13801.5701 17600.9210 27980.9995 7915.0673 27360.5330 5994.8166 9998.7630 14006.0670 113941017 ureC Nitrogen Ammonification Herpetosiphon aurantiacus ATCC 23779 5753.2881 5497.6598 5355.2170 8743.2620 9075.7724 17032.2310 5646.7428 119474775 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 6823.9265 5724.9178 15036.7102 20696.4164 5176.1124 7906.0946 74205.7529 26457.8475 27238.5321 10989.5958 10174.0801 36225.7325 157273399 pcc Carbon cycling Carbon fixation Candidatus Chloracidobacterium thermophilum 4987.2076 5702.3516 4376.5566 4981.1266 23499.8158 8124.3034 312237 nifH Nitrogen Nitrogen fixation Rhodobacter capsulatus 4518.8784 3978.5560 3098.6341 6108.7075 22318.5502 9946.8751 9451.3549 108760660 endochitinase Carbon cycling Carbon degradataion Chitin Myxococcus xanthus DK 1622 5552.4311 4573.1970 111615554 ppx Phosphorus Phosphorus utilization Verminephrobacter eiseniae EF01-2 17943.1380 5253.6908 3661.4731 27210.3588 67223.1945 62511.4223 21939.2279 39536.7694 52631.5909 46770.3964 91786039 mdlD Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 6355.5205 4780.9807 32153.1925 54239.1867 137286.2235 125094.4893 18038.6606 14086.1275 40810.5856 28986.3728 19070155 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 6927.0075 5204.3638 7817.5877 25592.8870 36581.6892 43597.9946 65437.3924 69044.9768 71957.9643 24894.1792 22011.8387 25373.6367 15075621 trzN Organic Remediation Herbicides related compound Sinorhizobium meliloti 6097.5345 6064.9429 10032.4636 6516.4951 119510025 mer Metal Resistance Mercury Nodularia spumigena CCY9414 7663.3035 5175.0614 14809.2763 12849.1179 38049254 mer Metal Resistance Mercury Enterococcus faecium 9446.4108 8096.9545 5566.8503 14045.5241 5258.6555 8230.3877 19084.5145 6433.0696 46389797 mcrA Carbon cycling Methane Methane production uncultured archaeon 4436.3349 7111.2105 121702879 ureC Nitrogen Ammonification Aspergillus clavatus NRRL 1 6854.7885 7181.0503 3204.3039 26354.9515 39996436 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 5474.4750 11175.9451 10950.4399 6606.8076 18818.1472 23672.9519 5486.5325 29833758 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 3722.7794 126105515 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 13241.4301 8953.7930 14004.8030 18591.1264 145245794 BADH Organic Remediation Aromatics Other aromatics Aspergillus niger 7239.2325 8505.5973 5506.2986 17166.1363 5073.0002 24768.8504 15582.9211 24296.0161 6814.7490 11011.8780 126593827 TerZ Metal Resistance Tellurium Bacillus sp. B14905 4530.4981 4247.7897 4176.3544 6324893 alkK Organic Remediation Others Saccharomyces cerevisiae 14481.4121 16776.9991 10038.9593 5209.6359 8137.0329 5493.5095 6615.0075 118579629 nrfA Nitrogen Dissimilatory N reduction Pelobacter propionicus DSM 2379 10343.5897 11576.8211 5335.3760 9268.3621 7245.0641 4380.7546 5758.3204 90415596 vanA Carbon cycling Carbon degradataion Others marine gamma proteobacterium HTCC2207 4083.1993 42475484 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous 6973.5340 6929.4160 12074.6403 12491.0348 9726.4918 17104.5238 27424.9078 18996.6984 25765.1611 11687.8729 12084.5475 92441508 amyA Carbon cycling Carbon degradataion Starch Mycobacterium sp. KMS 4072.8316 6247.6365 6148.4600 6707.1530 15595.2700 25115.2148 20809.1809 67850889 ureC Nitrogen Ammonification Clostridium thermocellum ATCC 27405 6280.2001 4630.8322 46096440 glx Carbon cycling Carbon degradataion Lignin Ustilago maydis 521 6612.1724 6695.8391 89362129 rubisco Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 3819.8331 4252.6876 7324.5220 21235.1318 11093.3477 12034.8311 4752.0336 144905863 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7454.8205 6538.9479 83368632 mer Metal Resistance Mercury Rhodobacter sphaeroides ATCC 17025 5532.3095 56696201 nhh Organic Remediation Aromatics Nitoaromatics Silicibacter pomeroyi DSS-3 12210.9711 12538.1866 9187.9938 4489.8554 6504.2874 5860.9914 6388.0675 148553994 pcaG Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 7068.8101 7331.3242 3905.7822 149783239 nirK Nitrogen Denitrification uncultured bacterium 9201.5400 7947.4378 8163.1090 158437029 trzN Organic Remediation Herbicides related compound Clostridium bolteae ATCC BAA-613 4154.8021 4441.0824 120588670 CopA Metal Resistance Copper Acidovorax avenae subsp. citrulli AAC00-1 5148.3956 4572.8742 3518.2223 7314.6157 6304.8104 67157834 glucoamylase Carbon cycling Carbon degradataion Starch Azotobacter vinelandii AvOP 6004.2946 4895.3191 6351.3968 5109.1322 5402.5589 125972766 CadA Metal Resistance Cadmium Clostridium thermocellum ATCC 27405 3956.6823 4142.2596 8911.9152 4833.4167 8759.3807 19504.7052 10248.2307 109455169 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 10046.0404 6088.1070 5584.6817 124007696 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Microscilla marina ATCC 23134 6145.6377 6978.1414 4480.8008 124363917 mcrA Carbon cycling Methane Methane production Methanocorpusculum labreanum Z 6828.7864 7762.2274 23876.8315 13080.6495 22908.1791 26052.4724 16745.0311 13177.5944 24983998 TerC Metal Resistance Tellurium Pseudomonas putida KT2440 7403.0922 7937.2103 8850.0744 14516.3901 5111.2642 10018.8633 40737.9783 25364.7676 7967.8887 67920251 pcaG Organic Remediation Aromatics Other aromatics Crocosphaera watsonii WH 8501 14521.1878 13862.4499 9761.3439 13571.1293 5159.1329 12407.7164 27293.6404 13954.5017 4790.7520 6045.2521 113731946 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 4249.5654 114567595 ZntA Metal Resistance Zinc Syntrophomonas wolfei subsp. wolfei str. Goettingen 5887.7004 6428.7215 11521.8263 149920229 linB Organic Remediation Pesticides related compound Plesiocystis pacifica SIR-1 3920.1648 3980.2679 24786.6423 22015.5352 18374.6278 111061265 pheA Organic Remediation Aromatics Other aromatics Phaeosphaeria nodorum SN15 5776.2512 8986.5091 3986.4927 11830.6440 6931.1682 73541483 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 5289.9744 27355241 Arylest Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 4272.8642 17740053 gyrB other category Phylogenetic marker Agrobacterium tumefaciens str. C58 5784.5026 6892.4092 8373.1879 7046.0979 4644.8058 6373.6203 4746.8355 157406196 CopA Metal Resistance Copper Methylobacterium populi BJ001 3437.5864 3727.1666 8240.3388 22450003 nifH Nitrogen Nitrogen fixation uncultured bacterium 5176.7415 6611.3339 4578.8267 10285.6280 5999.9382 13135.3510 13805.9728 12406.5686 29466008 norB Nitrogen Denitrification uncultured bacterium 5788.2413 4417.1187 9472.1445 19997.1116 5888.2562 11240.7169 26556.3768 9132.0450 113530663 nmoA Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha H16 4526.0363 3773.5142 4943.1659 56695591 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 5857.9658 5051.5320 5231.1654 11096.7852 11879.3816 4248.1879 113936557 alkB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 4046.1056 3907.8272 3137.7566 13992.8198 28204276 TerZ Metal Resistance Tellurium Clostridium tetani E88 6066.0869 23639.7821 15534.8793 42221.6180 85712.4842 20020.3203 51744.8160 29779.0720 21641.6146 37228.5104 156740540 cellobiase Carbon cycling Carbon degradataion Cellulose Roseiflexus castenholzii DSM 13941 9827.4668 11202.3715 19119.6802 16603.3164 6022.6894 9229.8538 9168.6191 3387795 pcpE Organic Remediation Herbicides related compound Rhodococcus opacus 5938.2468 7372.5631 6686.2908 157404561 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 5728.5688 17302.8967 37257.0277 94985251 exaA Organic Remediation Chlorinated solvents Deinococcus geothermalis DSM 11300 7465.1584 7232.1639 5865.1868 6887.2868 3220.0686 5255.7164 5547.0151 6187.5544 91802739 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrobacter hamburgensis X14 8934.5331 9869.1357 5925.7010 126706959 alkB Organic Remediation Other Hydrocarbons Sagittula stellata E-37 4139.1922 6710.4642 46917304 nirS Nitrogen Denitrification uncultured bacterium 4450.1209 119718977 atzA Organic Remediation Herbicides related compound Thermofilum pendens Hrk 5 17761.2453 13471.4774 8805.6264 20924.2459 15235.4535 53569.9403 88414.4630 17958.2374 27795.4613 48090.0070 45597.5213 43627.4111 89361126 nmoA Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 5541.7656 4458.1614 7921.6219 7068.1451 15187.1193 10027.4198 10168.5050 5491.8867 73762870 nirK Nitrogen Denitrification uncultured bacterium 5123.3832 4903.4560 118443212 TerZ Metal Resistance Tellurium Clostridium novyi NT 15946.7842 10285.7489 9845.1606 60439.1407 35725.9741 42367.7533 62441.9386 54418.9461 49484.2493 47617.0243 33343.9430 65848.9002 109645564 nrfA Nitrogen Dissimilatory N reduction Desulfitobacterium hafniense DCB-2 21551.4425 12517.2790 13762.5478 12675.8232 30645.1453 48410.6941 89478.4840 92482.1177 53989.3360 54945.3090 29158.0355 31912.1562 15791066 trzA Organic Remediation Herbicides related compound Halobacterium sp. NRC-1 5382.0310 31116.9828 14799.6873 14028.9818 11991.0096 6418.8952 7933.2308 8119.8431 12666724 glucoamylase Carbon cycling Carbon degradataion Starch Talaromyces emersonii 7643.9082 4934.6139 12895.1519 30486.5058 44743.1682 73254.2488 42041.9693 34769.3554 12440.1237 11385.6339 17857.3177 77463325 ppx Phosphorus Phosphorus utilization Rhodobacter sphaeroides 2.4.1 12556.1984 9703.5043 10669.2514 14865.2254 8515.9573 27503.6718 72048.5567 60118.7464 38459.8432 29111.0623 6685.7656 14196.3911 14027866 linC Organic Remediation Pesticides related compound Mesorhizobium loti MAFF303099 4361.5738 82717665 TerC Metal Resistance Tellurium Pseudomonas putida F1 4477.0915 5124.9202 15650.3305 7641.1742 9380.2594 51534865 nirS Nitrogen Denitrification uncultured bacterium 5288.8558 5939.5180 148500643 ChrA Metal Resistance Chromium Sphingomonas wittichii RW1 4533.5374 4447.2970 6820.1818 15014.5945 10666.6532 8609.9760 6024.7819 152964803 ureC Nitrogen Ammonification Kineococcus radiotolerans SRS30216 7503.8254 8314.1028 4890.7657 9458.0623 4385.0820 9294.3966 7068.3138 4075.3117 73541511 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 10630.5726 12230.9707 6316.4956 24564.5180 4657.6839 15163.5367 13573.0328 18158.5106 158522906 silC Metal Resistance Silver Candidatus Desulfococcus oleovorans Hxd3 4225.4961 85097536 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa OR74A 5274.4607 11417.9539 9121.0543 26609.3981 30746.8621 22820.2568 6426.1029 10447.2290 6430.4266 24373227 cytochrome Energy process Energy process Shewanella oneidensis MR-1 8778.8561 3819.7803 6184.4116 9344.4682 9345.5098 6952.4289 118647436 CopA Metal Resistance Copper Burkholderia ambifaria MC40-6 4349.0178 8497.2154 3873.0420 6391.7729 113944376 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 4598.0223 3929.2193 151939785 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio sp. Ex25 5775.9267 4037.9829 6725.1308 39627.5080 14167.3216 23617.9473 85858341 ZntA Metal Resistance Zinc Syntrophus aciditrophicus SB 24804.2996 26789.5574 7166.9827 14570.4537 5873.2169 10069.0964 4446.7743 9207.6447 11405.5184 9481.9955 119713520 Arylest Organic Remediation Aromatics Other aromatics uncultured marine bacterium EB0_35D03 9941.3858 4658.2290 11873.7848 13423947 pcaG Organic Remediation Aromatics Other aromatics Caulobacter crescentus CB15 3848.7887 3393.0349 5811.8475 15806552 pcc Carbon cycling Carbon fixation Deinococcus radiodurans R1 6826.4389 8371.2202 3282.4016 5148.7394 149949240 ChrA Metal Resistance Chromium Alkaliphilus metalliredigens QYMF 4646.8445 4460.4545 6549.4714 149951884 alkH Organic Remediation Other Hydrocarbons Alkaliphilus metalliredigens QYMF 13592.5510 9825.6026 5359.3430 12065.9835 62003549 narG Nitrogen Denitrification uncultured bacterium 4567.3933 5557.1424 3129.8237 8771.7541 158315140 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec 4547.7991 5686.7792 10056.8357 22925.6452 4629.7989 12008.5605 44558.4126 96941.0658 64399.6113 6489.9027 9591.6471 134045346 glucoamylase Carbon cycling Carbon degradataion Starch Methanococcus maripaludis C5 9922.2300 6341.3595 8980.9435 10219.5433 113866034 gyrB other category Phylogenetic marker Ralstonia eutropha H16 5921.9381 4476.7987 6209.2857 21182.6360 61441.6787 18122.3878 43406.8834 8032.8258 13137.2058 25936.0744 46095836 pheA Organic Remediation Aromatics Other aromatics Ustilago maydis 521 4892.3816 5505.8380 63253985 nitA Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. syringae B728a 3948.4491 3768.6350 116248957 cpnC Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 4830.8229 5377.3009 11297.9546 38257.5858 20966.8158 21361.3763 11173.7403 110825410 CDH Carbon cycling Carbon degradataion Cellulose Rhodococcus sp. RHA1 6813.8342 8553.5630 6067.7114 10615.8763 8043.0086 12455.9321 158523904 dsrA Sulphur sulfite reductase uncultured bacterium 4363.7200 2966.8945 8382.6048 86740690 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 6359.4769 6054.8511 6410.6475 9828.1699 6245.3727 3902.6261 13092864 ZntA Metal Resistance Zinc Mycobacterium leprae 10102.6108 8795.7418 7930.4069 37522378 linB Organic Remediation Pesticides related compound Gloeobacter violaceus PCC 7421 4504.2652 4273.1245 68203061 CopA Metal Resistance Copper Frankia sp. EAN1pec 6885.8266 6266.6522 47115400 rubisco Carbon cycling Carbon fixation Oligotropha carboxidovorans 5608.8645 2795.5941 5415.1708 4384.2168 112774547 xylG Organic Remediation Aromatics Aromatic carboxylic acid Delftia sp. AN3 4565.9157 37925029 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5308.7258 4865.7615 89067681 atzA Organic Remediation Herbicides related compound Oceanicola granulosus HTCC2516 5930.9433 4211.8016 5525.7375 12537.4358 20775.5028 12216.9497 7920.0626 78355627 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 5991.9410 11061.2216 9373.2382 4683.9391 6265.8065 24786.4351 27672.1527 16792.1970 6400.3603 6594.8999 77382984 silC Metal Resistance Silver Pseudomonas fluorescens PfO-1 4141.4339 7105.6236 8892.0978 27352484 pheA Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 10829.5894 5703.9331 13035.2051 110285806 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 4545.1210 4173.9234 4621.9136 4444.5746 29466032 norB Nitrogen Denitrification uncultured bacterium 7575.3363 5535.5905 90425301 ZntA Metal Resistance Zinc Rhodopseudomonas palustris BisB18 19101.0320 14361.8441 7531.3925 10344.2793 29265.3932 36285.7748 21336.7278 10789.2639 16442.7901 34586.6561 20338.6105 14425.8892 87281183 nirS Nitrogen Denitrification uncultured bacterium 5580.1552 4636.9646 146188553 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8200.1546 8476.4540 9241.6292 16938.6984 71906350 CopA Metal Resistance Copper Dechloromonas aromatica RCB 4700.3065 4513.1310 5491.3610 5933.9892 8527.6957 4897.4981 20083.1080 5578708 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas xenophaga 15776.1401 19464.2627 16547.1014 25446.5225 4914.2445 6904.0854 14190.1828 17889.7050 14724.4196 14123.6710 9706.8546 7725.2680 119403706 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus clavatus NRRL 1 17969.7537 19682.7631 9985.8917 17445.6131 3831.3378 6601.0745 11775.2620 77917904 silC Metal Resistance Silver Pelobacter carbinolicus DSM 2380 7791.7744 5558.1266 50540.1245 19044.9288 17672.2123 27523.4854 26347.2839 25629.6970 23890.5025 7958.7271 5972.2660 8197.9225 28542625 nirS Nitrogen Denitrification uncultured bacterium 5510.3444 4672.7470 7193.1828 7509.9861 4303.7391 7038.6107 85069178 nifH Nitrogen Nitrogen fixation uncultured bacterium 14837.1036 10822.9037 12280.7623 12544.1234 113898101 gyrB other category Phylogenetic marker Herpetosiphon aurantiacus ATCC 23779 7611.7535 6305.5868 13074.8000 6931.1219 30764.4138 78475.7739 49125.9676 71616.0817 21756.2551 22956.0548 34229.1107 84383691 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 4471.6275 118660516 atzC Organic Remediation Herbicides related compound Burkholderia multivorans ATCC 17616 5135.4633 5367.5187 15578.7155 20818.7198 9058.5883 18332.9017 54187.2446 37162.3006 58113.2734 6418.1709 11802.6776 119818800 pcc Carbon cycling Carbon fixation Stenotrophomonas maltophilia R551-3 7200.9828 5770.3702 7658.0819 9102.3561 8238.4451 42627732 Catechol Organic Remediation Aromatics Other aromatics Arthrobacter sp. BA-5-17 7082.6767 5970.6248 2781.2987 4933.5347 9193.3387 19294.7345 17803.2841 10481.8454 22217.4680 9043.7992 9220.2916 13814513 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 12253.6599 11971.5794 7931.8429 10378.2093 91201998 czcA Metal Resistance Cadmium,Cobalt,Zinc Candidatus Kuenenia stuttgartiensis 7722.5995 6631.7065 68240050 sox Sulphur Sulphur oxidation Prosthecochloris aestuarii DSM 271 24659.2033 20998.2628 20899.9965 27374.7950 3501.7692 5228.9814 11943.7482 8254.1678 9146.4518 7229.4507 8011.0162 146156567 ChrA Metal Resistance Chromium Flavobacterium johnsoniae UW101 4881.3610 3954.7295 8014.5668 4723.1257 10600.3270 31419.2155 18283.1170 8415.0787 7730.4248 40253038 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 13014.2780 6898.7783 23875.3051 17658.6776 21449824 exoglucanase Carbon cycling Carbon degradataion Cellulose Paenibacillus barcinonensis 7553.2411 14231.6316 77186.4810 20783.9290 56244.4770 20612.7481 8715.4159 149123831 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Methylobacterium sp. 4-46 5561.8045 5034.1274 5108.3249 4471.3146 108466697 CusA Metal Resistance Copper Myxococcus xanthus DK 1622 5890.1260 5950.0483 8658.6248 2550.3680 16724.1119 8624.5385 14636.7649 28542615 nirS Nitrogen Denitrification uncultured bacterium 11897.8503 10152.4916 89512860 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 3969.1834 71402610 nasA Nitrogen Assimilatory N reduction Lyngbya aestuarii PCC 7419 4057.6351 7664.4533 37498962 endoglucanase Carbon cycling Carbon degradataion Cellulose Bacillus pumilus 11701.6792 12810.8569 8611.2214 4507.4967 11491.3790 4415.0573 5510.7662 85723765 nrfA Nitrogen Dissimilatory N reduction Syntrophus aciditrophicus SB 6554.8074 8975.1170 3870.3603 8544.4449 77996098 napA Nitrogen Dissimilatory N reduction Carboxydothermus hydrogenoformans Z-2901 31497.8872 8198.8243 8455.8413 25840.3133 40382.7443 59060.2958 71117.2001 33879.3068 65194.7550 85460.1210 40180.1025 37613.8356 151580204 czcA Metal Resistance Cadmium,Cobalt,Zinc Opitutaceae bacterium TAV2 11748.0867 10229.4852 14730.5575 14790.9475 17931.4601 29494.0834 60928.6640 61684.4807 38929.4637 30516.1773 15995.2507 20523.9901 154246629 pcaG Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 4330.4717 7023.2110 111222526 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 5677.5347 5813.6035 6171.1343 8628.5500 8092.8588 54026163 limEH Carbon cycling Carbon degradataion Others Nocardia farcinica IFM 10152 3769.0643 39649728 nhh Organic Remediation Aromatics Nitoaromatics Rhodopseudomonas palustris CGA009 6173.9104 8073.0280 5103.5390 76558649 ZntA Metal Resistance Zinc Natronomonas pharaonis DSM 2160 5547.9114 4877.5281 85827162 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 16627.5340 17473.1422 10375.8666 16220.0436 7136.4522 11419.6974 8061.6232 8747.4922 8073.3444 8909.1555 118171657 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium smegmatis str. MC2 155 5685.1324 5267.4386 7918.9570 6374.3991 78194519 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 10162.3920 10203.0295 11874.3100 6082.0844 5850.7256 53610.3844 39122.4398 36980.5770 6483.2022 6416.4549 6160.3723 112462135 nirK Nitrogen Denitrification uncultured bacterium 4267.8391 5844.5013 110830193 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 4158.3548 5585.0412 12137.0596 7232.5257 8198.9739 13835.8700 6748.4534 5615.5595 8161.2830 84391003 nagG Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 5812.4536 5363.4117 4764.3271 3157524 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 10495.1033 14226.2237 7119.4916 10253.1797 4053.1028 5619.4686 10636.9485 11215.9072 9365.4740 12650.1520 10118.8949 5989.0309 113954784 CopA Metal Resistance Copper Synechococcus sp. CC9311 5520.1422 5056.3200 146279987 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 5147.6713 7530.9286 12359.9646 6647.3027 16794.0638 23034.9832 15300.0390 57020411 CopA Metal Resistance Copper Campylobacter coli RM2228 4539.9141 9071.5644 5039.6345 23563.0026 6664.3781 33333865 nidA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. S65 5510.2319 4370.0796 50842708 czcD Metal Resistance Cadmium,Cobalt,Zinc Propionibacterium acnes KPA171202 3720.1921 3833.2208 3727.8872 12230.2684 35330.8763 63420.8736 148653392 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 3968.7362 154319868 tftH Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 5175.9842 9002.4131 13330.6487 27351.6505 36603.1749 32119.0244 36276.8394 14034.7618 15376.0873 54027542 TerZ Metal Resistance Tellurium Nocardia farcinica IFM 10152 5219.8328 4278.3973 9088.5301 3227.3839 6697.9298 25399.6469 23213.9817 22038.8488 11564.2057 7188.1050 77462336 ZntA Metal Resistance Zinc Rhodobacter sphaeroides 2.4.1 5787.5816 4763.2679 68535710 ZntA Metal Resistance Zinc Corynebacterium jeikeium K411 7221.1814 4803.7425 56550639 cnrA Metal Resistance Cobalt,Nickel Ralstonia metallidurans CH34 4318.2234 116747543 ChrA Metal Resistance Chromium Syntrophobacter fumaroxidans MPOB 7447.7620 7383.6014 4281.8513 6059.0636 156231487 CadA Metal Resistance Cadmium Roseiflexus castenholzii DSM 13941 15717.2203 12258.3580 14034.2072 14275.3184 15809.9679 11135.7607 9590.7804 18795.5420 14609.0734 7863.8853 6453.9154 118701991 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 12730.0125 10509.3682 6186.8110 2879.4307 5618.2288 5361.7914 6557.2661 21929226 mnp Carbon cycling Carbon degradataion Lignin Phanerochaete sordida 7905.1298 7728.0343 13994.9591 17589.0682 13812.1376 8136.7404 7528.2797 6650.9810 156534913 amyA Carbon cycling Carbon degradataion Starch Enterobacter sakazakii ATCC BAA-894 8325.2968 5660.4162 134100617 pcpB Organic Remediation Herbicides related compound Saccharopolyspora erythraea NRRL 2338 4236.3333 5432.2334 12970.4741 13003.8952 4914.4834 115375191 endochitinase Carbon cycling Carbon degradataion Chitin Stigmatella aurantiaca DW4/3-1 6969.1232 4377.9788 5544.3253 157401497 nifH Nitrogen Nitrogen fixation Methanococcus maripaludis C6 6156.5756 4963.2770 3454.6125 10365.0299 11880.8941 8507.1200 8765.6721 30525473 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6546.2064 13813.7430 109643167 hydrogenase Energy process Energy process Desulfitobacterium hafniense DCB-2 4685.0615 4406.9727 5043.7374 91202266 dsrA Sulphur sulfite reductase Candidatus Kuenenia stuttgartiensis 8051.4164 13286.0176 3040.2562 3892.3538 49530588 cbdA Organic Remediation Aromatics Chlorinated aromatics Acinetobacter sp. ADP1 4824.6157 3679.4996 118685870 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 14475.2607 14219.2792 7970.0458 13007.1730 5175.8583 20479.2923 12531.5909 16814.3226 6617.9871 7155.2094 7369.5529 34332835 narG Nitrogen Denitrification Chromobacterium violaceum ATCC 12472 3917.7462 6199.3693 2637.7414 4817.2162 7284.7296 7408.2022 4670.3724 15678374 tutFDG Organic Remediation Aromatics BTEX and related aromatics Methanothermobacter thermautotrophicus str. Delta H 5084.8691 60100873 nifH Nitrogen Nitrogen fixation uncultured bacterium 7114.8350 6255.6478 116812183 nifH Nitrogen Nitrogen fixation Clostridium sp. Kas107-2 8621.9138 7461.6603 5117.3687 5901.2751 7251.8048 9206.8980 13015.9774 7858.7852 8177.6536 46203201 ZntA Metal Resistance Zinc Magnetospirillum magnetotacticum MS-1 5447.9761 5484.3197 111224155 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 5572.8899 7029.1254 5334.8188 7818.9354 7465.7290 18448.6176 8688.8476 6640.2522 83280994 gyrB other category Phylogenetic marker Thermoplasma acidophilum 11781.0810 10069.3960 6007.4946 15677.6866 48052.1061 7561.2883 27227.0544 6613.4056 23977.0139 33542.0658 149951551 CadA Metal Resistance Cadmium Alkaliphilus metalliredigens QYMF 19238.4932 9638.4242 23796.7396 19538.5047 47939.8248 61914.4943 106307.6130 102027.2843 65248.3957 59219.0155 37933.3728 42709.1356 3059192 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus erythropolis 4607.2210 3698.9857 4410.7591 91802740 CopA Metal Resistance Copper Nitrobacter hamburgensis X14 12059.9618 8188.2504 6348.3722 8001.4697 4793.2992 71849048 Xamo Organic Remediation Other Hydrocarbons Dechloromonas aromatica RCB 5769.7208 4507.2641 6334.9397 10496.0866 4147.9164 13913.2895 27316.1904 17174.3686 16691.1118 23138.5954 11958.0375 11757.8545 46915039 ppx Phosphorus Phosphorus utilization Photobacterium profundum SS9 6889.1758 6237.7743 19957.7263 14893.3591 19238.9899 21276.6860 49860.0110 43071.9949 12340.1899 10353.2122 13437.0769 78166202 rubisco Carbon cycling Carbon fixation Pelodictyon luteolum DSM 273 4359.6211 145250827 czcD Metal Resistance Cadmium,Cobalt,Zinc Aspergillus niger 5209.7149 7089.0260 3531.4531 16121.8606 4523.9796 82568121 gyrB other category Phylogenetic marker Thermoactinomyces sp. MBIC08001 7302.4107 7076.3899 5981.9913 30320.5673 16950.6143 33281.4120 119372733 pbrA Metal Resistance Lead Paracoccus denitrificans PD1222 5115.8264 119671145 pheA Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 8975.1399 7761.9322 6572.7131 8490.2976 5169.8402 6452.8839 5801.3417 145214436 Catechol Organic Remediation Aromatics Other aromatics Mycobacterium gilvum PYR-GCK 7080.9654 7033.2467 5651.0019 12512.6208 19753.2078 32934.5374 30953.7650 33178.5060 7961.2762 145317688 CusF Metal Resistance Copper Enterobacter sp. 638 14479.0830 10538.3268 27776.6166 15589.7277 37335.3136 48290.6372 78579.0365 90352.4302 50305.9847 55674.8592 30264.4311 29162.3824 19912103 gyrB other category Phylogenetic marker Cytophaga sp. I-1858 5443.4745 4078.2224 121998847 Arylest Organic Remediation Aromatics Other aromatics Halorhodospira halophila SL1 4237.1915 82715329 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 6499.4569 4735.3025 158317443 ureC Nitrogen Ammonification Frankia sp. EAN1pec 3131.2542 89210693 amyA Carbon cycling Carbon degradataion Starch Halothermothrix orenii H 168 4277.6466 134100191 TerC Metal Resistance Tellurium Saccharopolyspora erythraea NRRL 2338 6105.6845 5454.5453 5211.8486 8609.0587 4612.5914 6292.1917 6091.0818 7166.0075 146194009 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. ORS278 6092.7072 4230.4851 4453.2521 4468.3873 28509.9474 19572.0159 13436.1191 12587.8235 118658467 silC Metal Resistance Silver Burkholderia multivorans ATCC 17616 4884.5071 4266.8352 4457.8982 6046.3789 15087.5790 12639.1303 88941688 ZntA Metal Resistance Zinc Acidiphilium cryptum JF-5 7308.7215 5710.6436 113901773 gyrB other category Phylogenetic marker Salinispora tropica CNB-440 4769.7386 4657.4175 154159079 phtA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 5261.3681 5320.5165 10047.6251 3632.0932 8613.0509 27288.9077 22557.9759 22069.6341 5244.6056 5547.2595 42782712 ureC Nitrogen Ammonification Bacillus cereus ATCC 10987 5379.8831 4711.3311 3891.3879 6893.7726 111019301 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 4552.6596 94554270 pbrA Metal Resistance Lead Deinococcus geothermalis DSM 11300 4305.8765 4554.7198 4686.0910 4956.0013 2404.6700 73749279 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 6698.1866 4264.0034 3968.5808 99035807 phn Organic Remediation Herbicides related compound Silicibacter sp. TM1040 6417.6882 6398.3277 5717.7337 110835044 mer Metal Resistance Mercury Alcanivorax borkumensis SK2 4800.4595 3916.2254 4914.0830 114798820 czcD Metal Resistance Cadmium,Cobalt,Zinc Hyphomonas neptunium ATCC 15444 4764.5507 4309.9190 5249.0947 6680.4381 17955.8342 16085.0921 10026.0732 4158.8120 6677.2748 7649.3662 76796557 amyA Carbon cycling Carbon degradataion Starch Thermoanaerobacter ethanolicus ATCC 33223 26141.9040 18572.4718 13315.1013 17661.8174 61653195 nifH Nitrogen Nitrogen fixation uncultured proteobacterium DelRiverFos13D03 14345.0971 18017.5029 20999.3112 24906.8023 9113.5637 10945.0815 21298.3126 22375.9815 22091.2886 11035.4397 11101.0846 7362.8940 51243146 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. tfd44 4100.2502 111150334 chnB Organic Remediation Other Hydrocarbons Frankia alni ACN14a 8768.7270 5778.2842 154353329 nmoA Organic Remediation Aromatics Nitoaromatics Bacillus amyloliquefaciens FZB42 33956.0206 41868.4364 48360.5159 52270.4740 20621.7010 30305.2459 59440.0712 72835.5435 47942.1815 28709.7204 42629.8945 15888.0099 95111537 nitA Organic Remediation Aromatics Other aromatics Pseudomonas 4953.4827 4736.9066 4555.5989 56680245 nagI Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 7683.8415 6851.2312 10208.6395 2601.0866 5075.2420 4974.0814 84664413 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 4722.7207 4499.3925 9578.7492 3994.0668 26117.5012 15959.1489 25748.4637 7904.4074 6247.8490 17265.7613 113869328 trzN Organic Remediation Herbicides related compound Ralstonia eutropha H16 3823.8868 4104.7221 7161.2134 14330.1856 4392.5499 99081718 pcc Carbon cycling Carbon fixation Silicibacter sp. TM1040 5324.4481 6426.8966 88815199 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine actinobacterium PHSC20C1 8994.8745 8595.2370 16575.3495 59325.6008 50888.8122 52850.4780 17851.7212 38633.8685 19629.5637 66967.9595 145617404 czcD Metal Resistance Cadmium,Cobalt,Zinc Geobacter bemidjiensis Bem 14517.4588 14161.1093 9943.3500 10596.3766 6851.8573 9759.1409 18904.6356 18323.8131 28408.0457 13005.7797 7394.0583 9550.7846 146277258 exaA Organic Remediation Chlorinated solvents Rhodobacter sphaeroides ATCC 17025 6356.9813 5472.9402 5878.1219 7502.9796 2994.1253 5320.5500 7019.4353 5844.7611 120431228 phenol_oxidase Carbon cycling Carbon degradataion Lignin Sclerotinia minor 4035.0893 4706.3254 7614.0986 124901168 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia dolosa AUO158 4257.9952 5446.3446 12361.2603 118746907 rd Organic Remediation Chlorinated solvents Geobacter lovleyi SZ 7614.3362 8136.1689 146323215 trzN Organic Remediation Herbicides related compound Aspergillus fumigatus Af293 5123.8282 5181.2264 4722.1816 5843.9173 13740.5716 9295.8755 7705.2755 27348363 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 4721.8837 5820.7928 14609.0886 3883.4372 20211.9610 14743.0685 23299.9232 11139540 ppk Phosphorus Phosphorus utilization Mycobacterium ulcerans 7531.8750 6298.0471 7705.8258 7705.9153 9357.8627 7993.4375 7025.5166 11392.4225 76667345 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 6533.5096 6752.6663 6242.6459 3670.4725 6206.7398 9358.9703 10276.2105 11085.2508 11750.2919 10499.1298 6801.9738 28971849 xylL Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. P2 4450.1037 7500.1997 119189427 endochitinase Carbon cycling Carbon degradataion Chitin Coccidioides immitis RS 5700.1839 6172.3549 10498.3883 9104.9314 5196.4034 6664.9448 27920.0185 22498.7054 46902.2747 1591434 ChrA Metal Resistance Chromium Methanocaldococcus jannaschii DSM 2661 4206.0044 99083367 nifH Nitrogen Nitrogen fixation uncultured bacterium 5448.5423 5586.3546 5246.0492 7508.2679 17630.4923 34459.7050 42250.0318 64735.9237 17081.0531 10758.1655 118734797 sox Sulphur Sulphur oxidation Dinoroseobacter shibae DFL 12 3974.4322 6414.8809 99078285 cellobiase Carbon cycling Carbon degradataion Cellulose Silicibacter sp. TM1040 6799.1600 4967.8071 13481.0230 68135537 nifH Nitrogen Nitrogen fixation uncultured bacterium 6364.4077 5397.5909 146282613 exaA Organic Remediation Chlorinated solvents Pseudomonas stutzeri A1501 6152.8726 6974.7798 10890.5164 8734.1148 12839.2612 5379.9460 3576.5688 68510362 nirS Nitrogen Denitrification uncultured bacterium 11645.9929 13156.0916 6517.0804 7574.5876 5887.9522 6564.8980 5833.8067 7508.4906 19917684 nifH Nitrogen Nitrogen fixation Methanosarcina acetivorans C2A 8215.6486 7264.5291 5229.3076 77384304 atzA Organic Remediation Herbicides related compound Pseudomonas fluorescens PfO-1 4697.9376 3431.7587 3980.8652 6462.0549 15889.1196 7685.4136 118570209 pcc Carbon cycling Carbon fixation Mycobacterium ulcerans Agy99 5252.0261 5136.6527 14406.1968 7888.5755 54508.4741 42878.2907 40028.8131 7479.2765 9048.2249 150838841 proO Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 15725.6996 16666.0442 6424.1317 12583.2469 8017.7940 6563.7723 85825132 pheA Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 4622.2770 4027.3976 8006.6120 37517.6303 5744.4861 7724.9183 15932.0162 22430.8809 6591.0336 26590.8530 33413585 endochitinase Carbon cycling Carbon degradataion Chitin Trichoderma atroviride 15871.3581 11381.5948 27051.6258 90743.7404 16985.3626 26376.9652 77506.5691 71483.1973 75533.5578 20117.5122 12141.8016 12291.0022 116751190 CadA Metal Resistance Cadmium Syntrophobacter fumaroxidans MPOB 6447.8944 3953.5313 28982.3763 31259.4028 10792.6330 78222760 silP Metal Resistance Silver Geobacter metallireducens GS-15 5311.0358 5683.6962 37527096 AmiE Organic Remediation Aromatics Other aromatics Photorhabdus luminescens subsp. laumondii TTO1 4497.9337 115373925 linC Organic Remediation Pesticides related compound Stigmatella aurantiaca DW4/3-1 13373.6277 13786.0582 8638.6249 5046.6965 5831.6671 5672.8057 78224522 hydrogenase Energy process Energy process Geobacter metallireducens GS-15 7769.5721 7524.2132 7237.9616 6459.7164 7370.0935 17098.1557 23715.1016 13439.1776 16182.9124 20780.9204 12939.8316 14007.0321 85069042 nifH Nitrogen Nitrogen fixation uncultured bacterium 6053.6529 7449.3665 5976.7522 7802.7164 7241.0246 55229112 nifH Nitrogen Nitrogen fixation Haloarcula marismortui ATCC 43049 8035.6411 4914.3498 6522.0414 121529335 dehH Organic Remediation Chlorinated solvents Ralstonia pickettii 12J 16943.6919 5060.3054 10639.6482 13798.3357 23129.4665 34102.6226 39010.2568 55809.4349 16929.5887 17476.7856 157704432 dfbA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. LB126 3687.8972 157848467 endochitinase Carbon cycling Carbon degradataion Chitin Shewanella pealeana ATCC 700345 8259.4549 10516.5407 74136893 nahF Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 7856.4574 7023.8378 7101.7010 10467.4887 9553.2199 15383.4137 17099.2561 11279.7449 110548284 CopA Metal Resistance Copper Geobacter sp. FRC-32 9012.4963 9226.1679 8904.7065 22821.3788 5894.4850 154292281 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 4324.6739 93356493 proO Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 4145.9928 14563.5231 13757.9482 7484.0998 6137.6024 5517.3675 89052885 alkB Organic Remediation Other Hydrocarbons Jannaschia sp. CCS1 6117.0876 4954.7977 6201.4172 27349177 pcaG Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 8161.3528 5286.6205 6951.8321 120589257 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 4807.4584 5415.9449 11259.4925 60242.0202 3390.8137 6951.9107 56804.3543 78414.0532 79164.8615 12157.4750 10922.1867 71279079 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Colwellia psychrerythraea 34H 6786.2380 4815.1551 126354745 CopA Metal Resistance Copper Caldivirga maquilingensis IC-167 5755.9684 5026.4840 34017154 dsrA Sulphur sulfite reductase uncultured bacterium 5162.4452 3956.3785 17953.0176 39202.8929 13133.7845 8960.4381 66442.3200 52684.6724 53299.8197 5740.5621 10064.0276 13263.6301 148498935 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 5494.2079 4954.8465 56798123 narG Nitrogen Denitrification Pseudomonas sp. MT-1 9721.8150 8033.5031 4701.0301 3293.9873 113933102 czcA Metal Resistance Cadmium,Cobalt,Zinc Caulobacter sp. K31 4985.5967 5491.4629 10198.0074 16263.1162 26473.9939 22451.3445 30248392 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrosomonas europaea ATCC 19718 23056.4211 27437.9427 23613.5484 23850.3137 8415.3239 19154.5112 43756.6805 44464.3049 43278.3059 17277.1532 20146.3254 21375.5399 147668923 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 5463.7854 4161.4313 7698.6303 5645.8741 57235066 TerC Metal Resistance Tellurium Dehalococcoides ethenogenes 195 3638.9167 3980.8113 95112023 nitro Organic Remediation Others Pseudomonas 5893.8665 5475.9513 115422306 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 5878.5247 6843.8711 14507.8512 14893.8268 10165.9236 29723.7574 89055.9591 75825.1423 8289.6379 31007.1015 23014994 ArsC Metal Resistance Arsenic Magnetospirillum magnetotacticum MS-1 5636.8321 4676.8831 52003007 catB Organic Remediation Aromatics BTEX and related aromatics Bacillus subtilis phage PBSX 8241.3204 7818.6947 6203.2638 4427.3350 6404.5112 157679463 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9029.8103 5642.2328 148568682 CopA Metal Resistance Copper Roseiflexus sp. RS-1 4172.1397 6689.0575 3936.7589 68536566 ppx Phosphorus Phosphorus utilization Corynebacterium jeikeium K411 6341.9464 7105.7838 4514411 gyrB other category Phylogenetic marker Acinetobacter sp. 4772.7013 114324636 CopA Metal Resistance Copper Arthrospira maxima 4089.5884 4916.7885 3340.4900 4699.3846 51400.8988 7220.2356 157321291 ZitB Metal Resistance Zinc Serratia proteamaculans 568 4141.5111 116624723 xylanase Carbon cycling Carbon degradataion Hemicellulose Solibacter usitatus Ellin6076 8440.8560 8613.0108 5346.8172 3220.6580 99080367 ArsC Metal Resistance Arsenic Silicibacter sp. TM1040 4554.2783 4385.2691 5713.6262 6451.2825 7064.0386 15948.6791 10646.9687 7143.7910 5225.1801 5472.0261 113729424 chnB Organic Remediation Other Hydrocarbons Caulobacter sp. K31 5430.1432 5026.1979 3166.2033 5327.5358 4362.8897 126718802 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 7797.4943 5574.6676 4025.9774 144906114 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7773.0765 4620.1789 11040.3348 13209.8215 146401765 nhh Organic Remediation Aromatics Nitoaromatics Acidiphilium cryptum JF-5 4212.4885 4033.4428 87135378 benAB Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 8711.3944 7997.8059 12295.8661 10868.5970 3088.2907 5464.7978 5575.5945 37726850 dsrB Sulphur sulfite reductase uncultured prokaryote 3866.6112 4784.6451 16133.6780 24000.8326 18487.1615 15470.2860 4097.1075 70999251 CopA Metal Resistance Copper Aspergillus fumigatus Af293 4280.4162 23465007 silP Metal Resistance Silver Bifidobacterium longum NCC2705 11566.8662 5516.3933 24527.3100 76331.4024 92542.7784 48271.3021 36928.3501 53460.4729 46695.1638 67939261 CopA Metal Resistance Copper Chlorobium phaeobacteroides BS1 5001.0931 4569.7436 4615.9667 158316549 CDH Carbon cycling Carbon degradataion Cellulose Frankia sp. EAN1pec 4424.1694 5969.4035 126179880 nifH Nitrogen Nitrogen fixation Methanoculleus marisnigri JR1 3897.6336 126627124 TerZ Metal Resistance Tellurium Marinobacter sp. ELB17 10197.3776 8828.5575 11827.8877 9407.8886 5821.1976 14750.1870 11819.7107 11690.0162 10790.5001 11251.5076 11609.2206 9395.1989 146343609 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 4575.8663 5429.8262 14163.1681 6358.9815 20767.2532 13630.5564 4919.9893 151562437 ZitB Metal Resistance Zinc Ochrobactrum anthropi ATCC 49188 30209.1728 12661.1795 3727.2183 38197.9912 38311.8279 83595955 phn Organic Remediation Herbicides related compound uncultured marine bacterium Ant24C4 6840.0619 7855.1758 5068.3476 3532.0083 4687.7989 29466066 norB Nitrogen Denitrification uncultured bacterium 11243.7864 12346.7590 9142.9098 10660.7478 5039.7473 8185.0075 6507.1292 70673011 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 11032.3751 7864.8607 35312.3039 72926.9344 44910.0926 53874.5026 72427.2992 46072.9965 22575.0382 44072.5547 21217709 rubisco Carbon cycling Carbon fixation uncultured bacterium 4602.3305 62149262 nifH Nitrogen Nitrogen fixation uncultured bacterium 23025.6963 5607.5367 24456.7259 27507.7402 44526.7744 92015.4978 66047.4642 50605.6283 63003.9587 55262.6569 97946.3990 114226548 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 15557.3870 15926.9699 10162.7513 9684.3069 3346.6253 5859.3048 150377667 ara Carbon cycling Carbon degradataion Hemicellulose Sinorhizobium medicae WSM419 3346.8982 89338843 czcD Metal Resistance Cadmium,Cobalt,Zinc Mycobacterium flavescens PYR-GCK 4160.6800 5569.7509 3145.3874 77165857 ppx Phosphorus Phosphorus utilization Nitrosococcus oceani ATCC 19707 7801.6442 7861.1119 5114.6158 6961.6121 5052.1955 5572.3795 7870.9666 145244078 alkJ Organic Remediation Other Hydrocarbons Aspergillus niger 5449.0310 4529.9069 33900.5179 115515989 CopA Metal Resistance Copper Rhodopseudomonas palustris BisA53 4448.9146 5883.9906 15076646 merP Metal Resistance Mercury Bacillus cereus 5702.0620 20709.5346 10944.4527 38444.1421 15290.6518 14057.2314 44363.1546 23473.9408 29775.9777 85825937 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 4527.2764 5088.8498 19582.7248 18072.6908 6221.6155 111116458 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 4998.1481 5779.5969 4456.9159 7574.4255 5895.2708 4658.4293 46308002 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6833.6786 5238.8182 7608.9140 6738.2946 20916.9748 9776.4265 9880.6455 118740910 dmsA Organic Remediation Others Enterobacter sp. 638 4970.2547 5104.8858 7353.5003 11596.4988 4265.1435 6985.2484 119484786 mer Metal Resistance Mercury Lyngbya sp. PCC 8106 9914.0428 6058.6636 40714547 lip Carbon cycling Carbon degradataion Lignin Trametes versicolor 4750.7855 5748.4877 21423.8112 115253419 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 8218.4783 7666.4648 5531.3219 7615.7181 4020.2330 5190.7991 56910681 alkK Organic Remediation Others Bacillus clausii KSM-K16 18721.0398 17619.5007 13180.6576 5349.4577 16119.9140 10609.4377 20603.1497 28826.1113 6905.1981 12405.0021 70731219 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 3528.8267 3822.5150 18707.4880 14482.2284 111282116 CopA Metal Resistance Copper Acidovorax avenae subsp. citrulli AAC00-1 5557.1386 3762.4194 7574.8044 3543.5741 9721.8582 11393.0090 9397.5686 12763.0215 118711202 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia MC0-3 9904.4893 7929.0962 15846.2790 11155.8013 22045.2440 44520.4539 76870.3650 34203.1511 15243.8584 10027.8047 10359.3120 116697525 nifH Nitrogen Nitrogen fixation Syntrophobacter fumaroxidans MPOB 3924.6879 5720.2567 4006.3415 6572.3875 35145.3670 16565.9293 15646.5830 5383.6327 6258.5412 5650.8182 68165242 gyrB other category Phylogenetic marker Vibrio cholerae 7457.7535 10444.9841 4607.0013 7495.7167 145047059 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Polynucleobacter sp. QLW-P1DMWA-1 5301.1041 4217.7343 3598.4111 13172282 Catechol Organic Remediation Aromatics Other aromatics Streptomyces setonii 4482.5971 3489.2108 6683.8999 15393.2501 9883.1735 7722.6459 11503.6275 4699.1918 145588667 ChrA Metal Resistance Chromium Polynucleobacter sp. QLW-P1DMWA-1 8258.8550 6904.4964 8621.2354 7149.9702 5485.2085 11651.0966 10425.9272 5022.5324 5600.2771 8812.2877 8244.0364 118003463 nmoA Organic Remediation Aromatics Nitoaromatics Comamonas testosteroni KF-1 6088.7734 5045.2564 5944.2175 110833597 ChrA Metal Resistance Chromium Alcanivorax borkumensis SK2 4461.0119 3779.9980 2839.7050 6006.6838 7984.8305 118027744 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 4971.3200 6623.9069 5682.3487 14702.9571 10232.4797 12069.2618 134100479 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 4313.0619 3908.9093 35214744 czcA Metal Resistance Cadmium,Cobalt,Zinc Gloeobacter violaceus PCC 7421 8001.6834 8351.0194 5849.1671 4213.5337 4707.4001 76796296 bco Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacter ethanolicus ATCC 33223 6088.8792 5200.7416 112802902 merP Metal Resistance Mercury Campylobacter curvus 525.92 5171.0511 3885.0374 40062869 bphC Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 442 5999.8677 4764.4188 154160043 phdCI Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 5301.6937 4669.0355 5452.2330 87281376 nirS Nitrogen Denitrification uncultured bacterium 10191.7290 7764.9284 3594.5896 9474.7514 48466.5588 15214.2403 27807.0144 38558.8809 12300.7668 26069.1141 62468076 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 7105.7766 7820.9618 4376.7216 7667.2426 99083167 nifH Nitrogen Nitrogen fixation uncultured bacterium 7072.5724 6962.1611 4672.7087 118151833 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 4702.5985 4251.8621 11136.2890 157316835 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Shewanella sediminis HAW-EB3 9644.1070 7162.6273 5070.8675 87331868 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 4542.8866 4085.4423 3013.9427 41410047 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 8738.2167 8965.7517 7314.2257 4055.7819 1066147 amoA Nitrogen Nitrification Gordonia rubripertincta 4823.4852 36730.4612 29819.7563 19454.0974 90023084 Arylest Organic Remediation Aromatics Other aromatics Saccharophagus degradans 2-40 10281.9050 6165.6006 68233203 czcD Metal Resistance Cadmium,Cobalt,Zinc Frankia sp. EAN1pec 4480.3952 88805610 TerC Metal Resistance Tellurium Robiginitalea biformata HTCC2501 6447.3590 70984757 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 18122.0397 23023.6072 10922.5511 14006.8618 3929.4150 6397.5108 7182.9468 8614.0150 8356.7660 8868.2054 9107071 linB Organic Remediation Pesticides related compound Xylella fastidiosa 9a5c 7286.2279 5646.5979 6433.5759 3256.7465 3721.8758 3155.0802 83723753 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 6010.0355 8598.5326 6057.6712 2717.4033 4682.4764 15783.3148 11125.2299 13117.9651 4953.8502 5131.8625 6287.7772 23326899 ara Carbon cycling Carbon degradataion Hemicellulose Bifidobacterium longum NCC2705 8981.8753 8060.8428 5631.0028 15572.5551 12148.6496 27341.6975 48334.0116 11696.1315 16250.5478 32552.4125 21436.2161 42201.0339 91214707 pulA Carbon cycling Carbon degradataion Starch Psychroflexus torquis ATCC 700755 7980.2955 7507.6261 10357.6587 5028.5895 7746.3808 14263.3492 5203.8085 40740293 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 4648.0846 9587.0470 13838.8298 5891.7122 47447.1111 39240.1410 28136.4268 5365.7167 113726898 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 6397.3899 6089.9048 6872.8025 5310.8011 118173803 benAB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 5040.5219 4847.1783 7564.1199 13516.2196 12152.5632 28304.7562 17715.3106 20048.4062 8685.5660 7832.9723 9994.5761 118761912 nitA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 9124.8216 13489.0236 9698.5426 6131.1866 11109.7985 23252.4718 24028.0224 15822.1242 8581.6559 7254.0907 6058.8511 126208731 CopA Metal Resistance Copper Actinobacillus pleuropneumoniae L20 44539.3873 8331.0631 9081.3667 55230.2969 80314.2028 101077.0153 24384.0709 77366.9667 161864.0837 125407.5303 118028999 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 6978.3496 7016.1507 5794.1133 9739.7666 30592.5959 17728.3884 43445.1136 3871.7865 8207.3227 78684835 ChrA Metal Resistance Chromium Shewanella sp. ANA-3 9929.4082 10583.5901 10981.8807 5868.2273 10801.0791 5415.2851 74038278 nirS Nitrogen Denitrification uncultured bacterium 6240.1780 4633.7035 440136 dehH109 Organic Remediation Chlorinated solvents Pseudomonas putida 4062.7483 10581893 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Halobacterium sp. NRC-1 4974.5722 4230.8740 3087.8587 22759922 pheA Organic Remediation Aromatics Other aromatics uncultured soil bacterium 3627.8249 88807101 CopA Metal Resistance Copper Synechococcus sp. WH 7805 5664.1686 6604.2569 3209.4816 67782665 dsrA Sulphur sulfite reductase Chlorobium limicola DSM 245 5365.1684 4767.6956 116620758 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 5512.4105 5189.0510 4173.4233 84043039 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 5385.6077 5392.9511 4846.0096 10776.1209 10998.5764 13773.5753 18180.3658 21381.5357 14033.0242 119447721 silC Metal Resistance Silver Alteromonadales bacterium TW-7 5392.0406 5532.2630 28496.1843 15253.8925 14846.1236 9088.4393 8777.8468 5668.8702 119896759 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 11350.5827 15856.9330 11544.3318 11213.4698 7289.0137 8796.7340 13932.4116 18516.6228 11294.6677 8491.8533 16496.6625 10962.0574 152969313 ZitB Metal Resistance Zinc Klebsiella pneumoniae subsp. pneumoniae MGH 78578 5990.6629 5483.2316 8793.4091 9085.4485 7703.2058 18676.7248 21776.7771 18770.1201 10947.4207 4279.3206 8566.9867 5807.3570 46198234 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Exophiala lecanii-corni 7195.4527 7389.3749 4637.6988 68445596 CODH Carbon cycling Carbon fixation uncultured crenarchaeote 10-H-08 8590.1543 9618.3245 5552.9954 8702.5388 4243.0902 158318273 CopA Metal Resistance Copper Frankia sp. EAN1pec 11642.5047 10609.6845 7870.7769 13582.3382 6672.8850 94972219 CadA Metal Resistance Cadmium Deinococcus geothermalis DSM 11300 3621.8333 3843.4244 5038.8787 152988208 cytochrome Energy process Energy process Pseudomonas aeruginosa PA7 8836.9292 9138.6395 8803.4469 28547.0627 42766.5199 44728.3630 11177.2005 13291.3492 66351663 nhh Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens 21054.2196 20445.0812 11851.9102 27488.9469 2575.2710 3895.4625 7781.9124 4520.7781 7148.0119 6108.1322 94312941 pcaG Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 5958.9443 5531.3004 4219.5931 6220.8450 7683.1015 7289.8962 57504599 gyrB other category Phylogenetic marker Campylobacter coli RM2228 12667.9700 6888.5691 14227.0616 12122.2893 20954.2990 6490.8640 6234.6856 5104.7113 126249062 CopA Metal Resistance Copper Pyrobaculum calidifontis JCM 11548 9871.8814 3831.5176 6422.7102 28727.9234 9123.3707 32985.3667 16823.1917 20325.5056 51612.2243 29500.5818 13782.0956 52532.2237 134288165 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 14932.0735 11031.8087 21092.6465 12931.2307 24616.2141 48161.7881 49048.6995 54190.8322 44382.7856 34511.1452 19260.6681 20802.6777 27352080 catechol_B Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 4345.2466 9459.3909 8579.8856 9118.7513 8344.4339 89080255 TehB Metal Resistance Tellurium Oceanospirillum sp. MED92 16859.3066 16089.4195 14069.9053 18452.9243 3326.1737 11652.6074 16197.8130 39716.8722 11714.3446 8103.0366 10500.2148 83573380 dsrB Sulphur sulfite reductase Moorella thermoacetica ATCC 39073 29460.0537 11499.2491 14324.4665 12659.2390 40014.1713 24327.0513 57558.6625 15841.6790 72417.4692 36692.3697 46605.3616 158312905 amyA Carbon cycling Carbon degradataion Starch Frankia sp. EAN1pec 8991.7802 6730.7286 10864.9522 9994.3631 26986207 sox Sulphur Sulphur oxidation Pelodictyon phaeoclathratiforme 6973.0873 11263.0567 22604.8379 36340.6291 3515.2217 4181.9131 9884.2839 15547.9080 12673.9716 3870.0580 42558556 ZntA Metal Resistance Zinc Acidovorax sp. B0447 3506.1590 4055.1811 5486.8401 10388.9878 148657926 pcc Carbon cycling Carbon fixation Roseiflexus sp. RS-1 16311.5978 14637.3997 29324.9448 20856.0924 12921.9429 25814.8818 53484.2771 65105.9334 58393.2630 33696.2254 25658.1417 26107.1386 46850218 nirS Nitrogen Denitrification uncultured bacterium 4665.4780 4648.3349 5406.5161 109452392 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5408.8812 5489.6948 10803.9224 15603.6877 15518.8207 29007.5510 51894.1606 52435.8218 58096.6878 9632.9341 16461.1158 26538.4710 28269853 ArsC Metal Resistance Arsenic Lactobacillus plantarum WCFS1 5054.9728 3766.4495 58894.7407 24923.5422 14629.1819 91790708 ChrA Metal Resistance Chromium Polaromonas sp. JS666 7148.6242 5269.3224 5650.0124 8244.0737 14963.9879 14074.5097 7704.3434 6157.9832 9048.8621 6178.3449 31620028 alkB Organic Remediation Other Hydrocarbons Mycobacterium bovis AF2122/97 7333.3448 6718.4158 6265.7280 4443.1609 9893.4004 116812205 nifH Nitrogen Nitrogen fixation Clostridium sp. MK31 14835.4997 15186.0664 11326.0271 3741.2160 17618.3004 19190.7538 6848.1249 7235.3125 69259015 CopA Metal Resistance Copper Magnetococcus sp. MC-1 39420.7848 12677.4883 14857.2519 30882.4022 17403.3612 48885.8800 97174.9650 77895.1669 81015.8988 80999.4269 37897.9410 77302.9445 23492566 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 6137.1646 7745.4383 7163.4456 5431.8481 109457038 pcaG Organic Remediation Aromatics Other aromatics Roseobacter denitrificans OCh 114 5275.4785 5270.8143 8039.3509 9704.9495 119369964 gyrB other category Phylogenetic marker uncultured bacterium 25685.1695 15521.5634 42192.2017 38250.6014 38907.4215 69506.5871 73553.9605 57438.8746 48706.2048 40722.2658 34023.8159 32471.1701 83590236 dmsA Organic Remediation Others Moorella thermoacetica ATCC 39073 37913.3494 56365.8134 37191.1901 46382.6913 6013.3204 13593.1355 25917.3165 30913.3686 21722.2191 19560.9495 20354.6041 12646.9506 114227902 alkH Organic Remediation Other Hydrocarbons Alkalilimnicola ehrlichei MLHE-1 9410.3138 10158.6614 5660.9902 4708.6857 3741.0935 91703634 ArsC Metal Resistance Arsenic Mycobacterium sp. MCS 4452.2037 3195.6693 3764.6465 8446.4979 7659.2755 38488532 bphC Organic Remediation Aromatics Polycyclic aromatics Pseudomonas graminis 6046.7042 4851.7006 7126.9069 48208.5181 5605.7841 44321.8016 98643.0081 68004.6058 26515.5333 21592.4722 35481.9073 145555417 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17025 6003.5332 4972.0665 6863.4989 3263.7331 6857.9800 18385.4714 26198.7919 7989.0859 7961.4399 7453.4604 28629799 nirK Nitrogen Denitrification uncultured bacterium 4316.9869 6255.2824 79585.6219 110639751 nbaC Organic Remediation Aromatics Nitoaromatics Cytophaga hutchinsonii ATCC 33406 12805.4338 13785.6327 7895.9225 12051.0436 3817.6714 7971.1181 15834.4928 11843.0860 7559.5104 7891.8147 7644.8097 7302.7315 84687263 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 4789.7584 85715657 ppx Phosphorus Phosphorus utilization Nitrobacter sp. Nb-311A 5848.9446 4485.7141 5406.8743 5523.3587 9450.5110 6483.2403 6584.8435 34483923 ppx Phosphorus Phosphorus utilization Wolinella succinogenes 12903.7354 15207.9383 8065.0958 10017.2860 5738.4874 10581.6931 6738.0560 7925.5054 7317.5960 91977680 amyA Carbon cycling Carbon degradataion Starch Rhodopseudomonas palustris BisB5 5081.5313 5505.0947 4633573 nosZ Nitrogen Denitrification uncultured bacterium ProV 10592.9306 15201.0471 25314.6898 29921.6088 5132.1644 7086.6852 21994.7611 31827.3751 20043.0349 8899.3501 8529.9006 6666.5314 33238381 amyA Carbon cycling Carbon degradataion Starch Prochlorococcus marinus subsp. marinus str. CCMP1375 5807.6888 5438.0331 6413.1706 109804235 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 6084.5073 6008.6868 12198.7076 5144.8407 7965.5649 19984.7982 20276.9665 20867.1838 6956.7923 5874.8318 6066.8531 146410047 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 6137.1008 5094.3864 6005.8885 149360295 linB Organic Remediation Pesticides related compound Marinobacter algicola DG893 5985.5908 6572.4445 4988.3425 5580.6308 2895.0413 5015.1195 152970670 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 5500.7850 4386.3714 12623.7152 5374.9101 13636.3374 48276.0368 31814.1682 12147.2603 7643.1075 7514.4669 41407115 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 5746.9398 3471.2710 9923.6438 5805.2070 22391.8692 29990.2244 57822.9485 36977.9188 13898441 dsrA Sulphur sulfite reductase sulfate-reducing bacterium STC 6571.9162 4583.2761 12331.8615 124875943 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia PC184 11688.6379 8688.2184 15095.6990 61494.0181 16181.1178 24339.2499 57433.1666 72058.2618 77792.5672 26178.0712 14930.9469 15474.0909 29340972 ara Carbon cycling Carbon degradataion Hemicellulose Bacteroides thetaiotaomicron VPI-5482 22165.2234 20008.3060 13172.1199 21842.5134 7415.8936 15895.8387 12878.5499 15899.8715 27990.1955 20117.7505 11708.4778 9560.9977 85670855 nhh Organic Remediation Aromatics Nitoaromatics Roseovarius sp. 217 5215.6024 4157.1411 6221.1211 152979181 czcD Metal Resistance Cadmium,Cobalt,Zinc Actinobacillus succinogenes 130Z 9694.7943 8018.6043 14314.7809 15838.9723 11145.1198 13733.7675 22713.3780 34741.2891 36394.5569 25982.6239 8207.1123 9597.5009 89512460 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 7772.9044 10165.3930 3003.6094 5540.0764 37726855 dsrA Sulphur sulfite reductase uncultured prokaryote 24642.9448 14395.9771 16686.5064 17522.2078 54797.5898 72595.4710 96662.5355 94989.8606 59236.2080 52768.6796 37122.4959 38579.7450 121699996 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 4828.8390 3829.2033 23451181 gyrB other category Phylogenetic marker Aeromonas enteropelogenes 5912.7936 6191.8307 113901546 czcD Metal Resistance Cadmium,Cobalt,Zinc Salinispora tropica CNB-440 5259.1315 4201.8660 18788.7804 7029.7434 9742.8553 89512930 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 8841.4096 7869.2333 9041.6598 7289.0415 7906.9579 8991.6323 116662145 CadA Metal Resistance Cadmium Arthrobacter sp. FB24 8964.1437 7020.0515 5160.8199 73534169 nifH Nitrogen Nitrogen fixation uncultured bacterium 5012.9186 4118.7086 3087.4626 11353.9980 12357.8987 48730.8981 15350.0786 153804427 CorC Metal Resistance Cobalt Campylobacter hominis ATCC BAA-381 4117.2434 6137.0903 11375.4647 36083.5349 3493.2838 4434.8237 14297.6678 13130.7886 3715.1870 15828087 ZntA Metal Resistance Zinc Mycobacterium leprae TN 9789.6514 17058.0566 31009.4036 16530.3022 59178.0534 64079.7821 56715.8846 49120.5657 48290.2137 11477.1365 36124.7704 37522898 xylF Organic Remediation Aromatics BTEX and related aromatics Gloeobacter violaceus PCC 7421 4964.8989 4367.5574 5219.2553 8956.5879 10425.9570 11445.6605 20672.9668 18669.6900 15253.7250 10623.0918 7296.6824 99030507 ppk Phosphorus Phosphorus utilization uncultured bacterium 5271.9621 5255.2230 4247.4875 7743.2581 11378.6017 17668.0232 19313.4417 11018.4105 7217.2531 6261.1330 76167188 CopA Metal Resistance Copper Chloroflexus aurantiacus J-10-fl 6425.2955 4990.0726 103487155 ZntA Metal Resistance Zinc Sphingopyxis alaskensis RB2256 6039.6061 5824.0030 4015.1865 6220.1992 99083279 nifH Nitrogen Nitrogen fixation uncultured bacterium 5677.7700 4903.9192 6881.4655 86285332 ZntA Metal Resistance Zinc Rhizobium etli CFN 42 6764.3605 8126.8371 4178.4203 120553165 phn Organic Remediation Herbicides related compound Marinobacter aquaeolei VT8 7089.0513 4189.5365 5881.6483 7909.7312 9212.1677 10207.0784 146343107 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 6151.3247 6003.3373 3804.8956 82740121 ZntA Metal Resistance Zinc Pseudomonas putida F1 6592.8291 5303.5878 12812.6761 17140.6095 19987.4698 24684.7797 37526.5977 63761.4685 21841.8651 8082.9411 7444.8558 89473922 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium 7459.9470 6220.7133 5948.4605 89358233 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 8375.9815 7056.1859 11019.5184 5046.7873 9280.1193 16771.1612 12254.5883 18234.1005 5374.3594 23492828 BADH Organic Remediation Aromatics Other aromatics Corynebacterium efficiens YS-314 4142.6648 7781.2808 13898431 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium 3681.1769 15078.9964 32184.9217 9859.3026 15687.5071 92051.2245 107022.4643 55966.5857 8727.0340 170525 pheA Organic Remediation Aromatics Other aromatics 4618.2973 4174.0890 6436.1664 111020867 xylJ Organic Remediation Aromatics BTEX and related aromatics Rhodococcus sp. RHA1 4570.1769 3705.7294 118171930 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 5831.6941 5010.9924 7772.7027 2809.9185 109625740 trzN Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 3639.0970 5729.3976 146307291 cytochrome Energy process Energy process Pseudomonas mendocina ymp 4792.9518 2544.6091 4655.2944 17213.9992 23752.6400 83316998 nirK Nitrogen Denitrification uncultured bacterium 6197.7219 7836.3961 5964.4706 11966.5720 11767.1380 10066.3399 6889.0522 116203445 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 4333.5351 7044.0582 39995891 hydrogenase Energy process Energy process Geobacter sulfurreducens PCA 4441.4901 6771.9469 116749742 nitA Organic Remediation Aromatics Other aromatics Syntrophobacter fumaroxidans MPOB 3569.4213 2841.2195 7072.9870 118668503 silC Metal Resistance Silver Delftia acidovorans SPH-1 5276.5331 3672.7965 4829.9164 4539.0663 3261.0201 85721171 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Syntrophus aciditrophicus SB 9209.5492 6305.1916 76260074 amyA Carbon cycling Carbon degradataion Starch Chloroflexus aurantiacus J-10-fl 9984.0693 7038.5943 7305.7998 50952845 mnp Carbon cycling Carbon degradataion Lignin Trametes versicolor 10938.7184 6471.1779 8116.3098 11511.1548 7785.5311 11986.2537 18954.9870 19388.6263 12318.1956 14711.2065 10517.7678 7793.6272 110286166 CopA Metal Resistance Copper Mesorhizobium sp. BNC1 9984.1797 10504.5466 17304.8985 10553.0334 11118.2092 16709.1200 19867.2123 12411.9623 12420.9149 15775.5311 10008.5589 154299780 glx Carbon cycling Carbon degradataion Lignin Botryotinia fuckeliana B05.10 3561.2443 12466.2994 4335.1988 30858.6471 87199256 proO Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 5066.4910 3848.4542 5633.0190 5337.5026 68160312 dxnA Organic Remediation Aromatics Heterocyclic aromatics Janibacter sp. XJ-1 4509.3407 4540.2063 5888.8921 73542239 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 4641.6701 6492.3360 51451372 arsB Metal Resistance Arsenic Pseudomonas stutzeri 20073.4816 16147.1374 8874.0525 9652.5891 13625840 gdh Nitrogen Ammonification Clostridium lituseburense 5957.8393 4713.3684 2650152 CopA Metal Resistance Copper Archaeoglobus fulgidus DSM 4304 5373.1175 4994.3364 3383.3901 2299.6713 20565.3450 17071.9206 88189149 atzA Organic Remediation Herbicides related compound Methanospirillum hungatei JF-1 4777.9907 89512254 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5741.8198 4269.4585 3502.3693 16360.7120 5755.0898 8688.8473 33205.6202 12284.0003 9272.6610 7725.3706 119963032 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 21793.5002 22314.4400 15978.7860 16039.8137 4983.6230 12080.4499 9671.8232 8275.5666 12186.3177 10645.0137 11054.4112 112462647 nirK Nitrogen Denitrification uncultured bacterium 6322.0000 6179.1469 4122.6825 6114.0075 4101.2212 158423080 CopA Metal Resistance Copper Azorhizobium caulinodans ORS 571 5312.9897 15589.3861 24224.1980 42883.7842 15866.8671 43079.4974 20303.8108 10553.0009 14569.4733 77176863 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. KB1 18987.8507 19236.6028 6311.8690 15149.3602 44632.5001 49502.1358 52410.1220 112945.0579 114872.6890 53933.4615 146277090 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 6346.3853 7166.7348 5862.5005 5690.6834 150836371 pcpE Organic Remediation Herbicides related compound Marinomonas sp. MWYL1 14537.6359 5146.1961 7957.3430 16466.3402 15853.8781 20854.6990 8796.9175 31952.3364 32611.7485 16002.4987 56678387 nbaC Organic Remediation Aromatics Nitoaromatics Silicibacter pomeroyi DSS-3 7684.0159 6469.3477 10580.7633 6383.5962 9195.3019 24995.9878 52484.8607 18188.3716 8527.5691 8085.9392 19123.5722 116333062 cadBD Metal Resistance Cadmium Lactobacillus brevis ATCC 367 9706.7876 10682.4800 6420.0234 3830.2770 7846.5967 6572.5812 8700.6277 6051.8710 150410129 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 21872.8076 12583.9377 21764.0608 11765.3415 4047.9234 21404.9139 15700.6762 15831.3576 119459813 linB Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2080 5655.6663 6756.1003 46914417 CopA Metal Resistance Copper Photobacterium profundum SS9 3927.8402 18391.6423 52082189 benD Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis ATCC 14580 4141.8589 4345.9551 18076027 metC Metal Resistance Mercury Pseudomonas sp. 9089.6956 6279.8511 9413.3794 5327.5322 12554.1270 15786.6706 11534.7789 8332.0849 12039.6796 6696.9754 7452.5073 67784303 ppx Phosphorus Phosphorus utilization Chlorobium limicola DSM 245 5979.4122 5978.2527 4241.0191 84778339 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8619.7472 8269.3632 5614.1971 4919.2960 4103.4924 62944556 gyrB other category Phylogenetic marker Zymomonas mobilis subsp. pomaceae 6202.8341 58002781 ppx Phosphorus Phosphorus utilization Gluconobacter oxydans 621H 5731.1871 4625.4601 6724.1622 12122.2564 6124.8085 30082.5599 8796.7146 6169.3613 5605.5180 118666510 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 4687.4949 149202894 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 5245.2761 4339.1186 6265.0789 119775353 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella amazonensis SB2B 4815.2983 4984.3177 83773727 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus oryzae 5848.6140 8976.6182 3663.9551 93358319 phtA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 7723.9838 6336.5406 6764.5616 52080381 TehB Metal Resistance Tellurium Bacillus licheniformis ATCC 14580 15249.3002 14112.5442 7378.5384 7780.0490 4676.4366 4457.2535 119884258 czcD Metal Resistance Cadmium,Cobalt,Zinc Salinispora arenicola CNS205 5972.6155 6338.7056 9492.0069 6041.6389 13295.3977 10849.5879 5677.8091 5901.0943 120587318 nagI Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 4702.8138 5068.0156 3854.6164 5097.8678 7552.1771 58270198 czcD Metal Resistance Cadmium,Cobalt,Zinc Cryptococcus neoformans var. neoformans JEC21 6233.1339 4434.8892 3581.0801 5910.4735 104781779 ZntA Metal Resistance Zinc Pseudomonas entomophila L48 6245.7273 6150.7697 2793.2213 149917477 phdCI Organic Remediation Aromatics Polycyclic aromatics Plesiocystis pacifica SIR-1 2949.6639 115422025 ppk Phosphorus Phosphorus utilization Bordetella avium 197N 18904.4948 25071.7025 10195.9990 11846.7553 10071.5729 7946.1650 88696575 endochitinase Carbon cycling Carbon degradataion Chitin Bionectria ochroleuca 7554.8070 30517.7947 34949.4628 57731.4347 56059.4654 19231.1730 84667559 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 39783.5969 17382.0015 14403.5364 91170.7331 73811.7697 107969.0419 122558.8255 84994.6861 67318.9871 170687.1207 180355.9145 120609491 ChrA Metal Resistance Chromium Acidovorax avenae subsp. citrulli AAC00-1 21757.8865 19436.1779 20701.6568 27039.9554 14958.2964 20875.6416 34547.9958 40602.9014 32130.8514 21594.8564 28797.6108 16266.4331 68345513 xylL Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 5141.4757 3654.6280 5911.8629 8235.5731 13360.6604 31355.9065 22681.7880 154156259 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 4923.4805 4035.1410 3116.2780 4573.4414 7654.0265 70993166 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 9746.9660 11477.7619 7793.7352 24943.0742 10516.4117 9793.3782 50247.1580 40139.7340 56759.3288 11837.4231 14163.7820 16613.4291 142850418 ArsC Metal Resistance Arsenic Aeromonas salmonicida subsp. salmonicida A449 6716.7982 4478.2337 83178.1949 35478.2684 44537.4455 19330.7755 51313.8639 78515664 ChrA Metal Resistance Chromium Bradyrhizobium sp. BTAi1 5746.5205 5571.1728 2524.9611 3443.9742 118669136 CadA Metal Resistance Cadmium Delftia acidovorans SPH-1 8155.7512 7831.4342 6905.5220 6460527 ArsC Metal Resistance Arsenic Deinococcus radiodurans R1 15733.4717 16312.2146 7836.5146 9465.3526 4933.8955 6466.2330 6251.8597 1854553 nifH Nitrogen Nitrogen fixation Methanothermobacter thermautotrophicus 10555.5479 9106.7216 12274.2006 5080.0068 9380.3118 7488.5992 6666.5427 6542.8520 14520861 atzA Organic Remediation Herbicides related compound Pyrococcus abyssi GE5 7465.9438 9355.1435 6890.2581 26568.9822 6768.6329 15157719 pcpE Organic Remediation Herbicides related compound Agrobacterium tumefaciens str. C58 5013.6086 5288.1142 4146.2927 5852.0342 88917166 ChrA Metal Resistance Chromium Geobacter uraniumreducens Rf4 6642.2935 5401.6516 117996273 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Chloroflexus aggregans DSM 9485 4912.0737 4855.0214 150400770 CopA Metal Resistance Copper Methanococcus aeolicus Nankai-3 14120.1839 15116.6477 8522.1028 12011.9987 4967.5396 6568.9774 6422.6970 103487991 mer Metal Resistance Mercury Sphingopyxis alaskensis RB2256 4798.0154 5799.5556 2792.4610 3858.4522 74422182 CopA Metal Resistance Copper Nitrobacter winogradskyi Nb-255 5393.9077 5779.3143 11744.0818 14894.2565 12499.2183 7370.4460 12278.1483 11255.7505 8343.0270 5134.4633 52784460 amyA Carbon cycling Carbon degradataion Starch Bacillus licheniformis ATCC 14580 6312.5866 5312.7729 30954.3593 48551.8089 10147.1780 19254.4181 14009.3838 27159.1214 119369962 gyrB other category Phylogenetic marker uncultured bacterium 8470.8008 5806.4569 8665.2612 3544.2067 15049.3739 10189.0276 5755.9104 83749278 nagL Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 6035.1880 4170.1215 3316.5620 157406625 chnB Organic Remediation Other Hydrocarbons Methylobacterium populi BJ001 6630.8961 6630.3596 3811.3531 2584.9086 5691.3667 4723.3535 24460036 cpnA Organic Remediation Other Hydrocarbons Comamonas sp. NCIMB 9872 11582.2213 13660.4102 6104.5696 10718.3389 4757.0099 83723511 pcaG Organic Remediation Aromatics Other aromatics Ralstonia solanacearum UW551 10983.2090 10140.8356 11659.8411 14321.1444 2521.7129 3827.3396 4341.7639 115253427 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium leguminosarum bv. viciae 3841 8653.2839 5762.9747 2788 glucoamylase Carbon cycling Carbon degradataion Starch Amorphotheca resinae 5423.2678 5318.6142 6186.6475 7357.5616 3872.8236 16069.6544 14357.9727 21071.7215 120402513 scnABC Organic Remediation Others Mycobacterium vanbaalenii PYR-1 4564.1664 10886.6558 4625.8601 119391437 narG Nitrogen Denitrification uncultured bacterium 5313.7617 7076.6662 9651.3260 108804102 nitA Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 5966.8738 5084.2032 50084612 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 5098.1362 4380.4218 90197718 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 6368.5197 9443.0023 5615.3341 12230.2442 5796.6580 22066.9520 14256.9962 28472.6613 110631274 nifH Nitrogen Nitrogen fixation uncultured soil bacterium 5550.8674 5246.6439 2795.1728 4650.4690 8689.9137 33243185 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11735.3476 20284.8610 12090.6401 17176.8280 5181.4787 7115.3891 10728.7929 8566.9890 7785.8509 8445.3920 29466068 norB Nitrogen Denitrification uncultured bacterium 7468.9054 9717.2632 7973.0516 6382.4865 118664168 CadA Metal Resistance Cadmium Clostridium cellulolyticum H10 11560.9367 7788.0110 12659.0211 12538.7093 118046834 cellobiase Carbon cycling Carbon degradataion Cellulose Chloroflexus aggregans DSM 9485 5986.4530 6027.9994 6342.7322 5351.3940 8390.9472 5886.5462 20781.6463 94264964 CopA Metal Resistance Copper delta proteobacterium MLMS-1 13092.4356 12184.3182 7133.9479 8210.3378 5198.0181 6372.8953 5140.8359 13268.2613 89098045 amyA Carbon cycling Carbon degradataion Starch Bacillus sp. NRRL B-14911 4155.3359 4885.3964 19421872 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense 8995.3600 4998.4128 5129.6109 6589.8787 28204277 TerD Metal Resistance Tellurium Clostridium tetani E88 6629.1878 7105.7281 4872.2536 77362237 silC Metal Resistance Silver Pseudoalteromonas haloplanktis TAC125 12272.3714 19607.2403 17370.1930 24439.5914 5491.4362 9878.7376 23418.6300 28058.0179 21077.5166 10697.3878 9438.9452 7920.8726 598355 lip Carbon cycling Carbon degradataion Lignin Phanerochaete chrysosporium 7220.2777 10760.6082 10009.2709 13212.4523 6775.7325 6933.4514 144947381 trzN Organic Remediation Herbicides related compound Petrotoga mobilis SJ95 6357.9840 5943.1799 16414.5078 7694.4720 12484564 czcC Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas fluorescens 6623.5364 5400.4204 7218.4860 6768.8062 3440.6350 6576.3207 113866836 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 5505.1357 5030.5216 5586.2375 115258222 ChnA Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 10283.5092 11608.2867 4306.7211 11814.7777 5167.5124 83748930 silC Metal Resistance Silver Ralstonia solanacearum UW551 8390.2580 4864.7036 5109.3881 14821.0628 21576.6761 11884.7667 9157.6332 7511.9334 14195.8319 13538.5017 67538514 ChrA Metal Resistance Chromium Aspergillus nidulans FGSC A4 23244.2068 10331.1955 6588.0498 19250.4076 54167.8238 46466.9842 30032.5803 14483.1256 11173.9886 11191.4422 14952.6756 117619830 mer Metal Resistance Mercury Aeromonas hydrophila subsp. hydrophila ATCC 7966 5281.3747 16357.7305 12099.4903 42579.0289 37036.3197 7613.9563 20483.2253 150386993 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 6116.3265 6912.8866 4937.8213 3637.2760 15157795 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Agrobacterium tumefaciens str. C58 10812.7362 7475.8344 9359.8455 7257.1659 40286838 scnABC Organic Remediation Others Methylobacterium thiocyanatum 5050.5184 6563.2058 3866.1797 76803740 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 5962.8156 5185.1704 5442.9864 4425.4070 5434.3291 20509.7381 9184.0635 21306.4042 7202.4856 67087778 silC Metal Resistance Silver Azotobacter vinelandii AvOP 17057.7231 14494.7424 9245.0367 10022.6119 11041.0352 16676.1392 13100.4940 11834.4274 13789.2472 14710.9952 11623.5230 44829089 nifH Nitrogen Nitrogen fixation uncultured bacterium 40692.5293 40134.8279 9533.3262 21737.4615 8717.4127 11373.1162 18788.3290 14920.6887 22659.7647 19931.5444 13417.6146 19800.8780 39995384 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 5648.6453 4602.6283 14763.9762 2977.2162 6323.6199 121608071 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 3683.7710 11385.1717 4442.1761 19799.2414 43713.4972 17132665 catB Organic Remediation Aromatics BTEX and related aromatics Nostoc sp. PCC 7120 9062.9817 8591.3622 6102.6747 19038.1874 6475.7879 24955.4382 25346.2222 5578.5771 6254.2073 5320.4019 157368458 CopA Metal Resistance Copper Serratia proteamaculans 568 4605.4883 2657.4212 39996885 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 5172.9598 3598.3559 8788.1194 2697.8151 21389.0706 18919.2494 32240.3505 4841.3626 121720148 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 10638.9207 6206.9129 94972021 CopA Metal Resistance Copper Deinococcus geothermalis DSM 11300 7891.3255 6554.7323 15942.3540 11875.8553 9080.2882 6282.7394 8345.4200 7548.7612 148554700 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 4742.9254 4435.5994 5373.2800 118037116 silC Metal Resistance Silver Burkholderia phytofirmans PsJN 4171.5381 6277.0072 5935.5583 5391.3557 89159560 gyrB other category Phylogenetic marker Halothermothrix orenii H 168 6868.2515 5567.3371 12031.2640 11279.2016 12295.2566 42475470 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous 8208.1074 7301.2707 8051.6466 3196.8877 4444.8228 8292.3334 5768.9083 7748.2015 119451158 tfdA Organic Remediation Aromatics Chlorinated aromatics marine gamma proteobacterium HTCC2143 10584.6120 10912.6075 7099.2130 10458.9398 4767.8242 126626855 phdCI Organic Remediation Aromatics Polycyclic aromatics Marinobacter sp. ELB17 4453.4343 5893.6531 4286.0979 7028.9312 23538.5935 31142.5223 14509.2769 4266.2622 118590352 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 6219.6416 9560.9400 6209.4340 152978706 CopA Metal Resistance Copper Actinobacillus succinogenes 130Z 9780.2961 13174.4867 14192.3095 12695.7374 3150.2811 6514.1793 14868.6251 7981.7013 9581.4173 157364688 ChrA Metal Resistance Chromium Thermotoga lettingae TMO 4363.2093 6371.7879 13708.9923 12315.2127 6756.0689 4291.5548 121495608 narG Nitrogen Denitrification uncultured bacterium 7359.6396 9341.1090 7624.5972 11882.9510 8611.5192 11753.1935 7312.5796 6049.7981 84786888 pcc Carbon cycling Carbon fixation Erythrobacter litoralis HTCC2594 5514.6091 84690829 gyrB other category Phylogenetic marker Parvularcula bermudensis HTCC2503 7066.1937 11002.2519 4645.5706 2052182 mer Metal Resistance Mercury Pseudomonas sp. 6055.2376 3719.9037 6344.5500 9408.1542 12868.7275 10222.0037 8624.4130 11611.5874 10637.4122 17738975 ppx Phosphorus Phosphorus utilization Agrobacterium tumefaciens str. C58 29720.0111 35977.1388 15888.8233 12872.0782 20708.2308 16342.4136 22370.5031 14333.5635 16842.8529 20747.6756 9893.0183 10866.6451 91720906 ppx Phosphorus Phosphorus utilization Psychrobacter sp. PRwf-1 6583.3734 6929.3056 6460.6608 4207.5266 6598.0065 10218.5924 5294.4006 10407.4896 37548678 nifH Nitrogen Nitrogen fixation uncultured bacterium 5407.6503 5656.4103 18236.9018 149130553 ChrA Metal Resistance Chromium Bacteroides caccae ATCC 43185 4072.7103 12318.9102 145240187 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 14658.1646 10289.0947 9974.2037 10970.9050 41739.2241 54721.7095 84964.8530 87192.8197 60619.1990 72317.9943 32067.9756 35490.5644 157404581 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 4491.8889 3538.2879 116743228 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5290.1478 7450.8867 6866.3344 12370.1481 11524.8407 29607183 ppx Phosphorus Phosphorus utilization Streptomyces avermitilis MA-4680 9205.6782 7182.6518 6706.5660 3774.7876 7545.6444 8973.8406 6131.5216 6454.0741 4768.0186 89200536 catechol_B Organic Remediation Aromatics Other aromatics Bacillus cereus subsp. cytotoxis NVH 391-98 5550.5099 5076.9495 3014.7052 145571503 pulA Carbon cycling Carbon degradataion Starch Pseudomonas stutzeri A1501 5237.6660 9727.3250 9921.1496 15335.8270 20177.7284 40916.8901 14632.9803 30043.6233 21813.6259 9082.2414 10418.4898 33391293 nosZ Nitrogen Denitrification uncultured bacterium 4097.5680 5092.5170 110630622 nifH Nitrogen Nitrogen fixation uncultured soil bacterium 6771.9703 6011.1253 5775.0023 6195.6250 3752.6214 6587.7055 9078.5131 5465.4331 5930.5877 7373.2374 5685.7184 3157608 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 7628.4486 10656.4099 14826.2210 36324.2345 62378.6264 10364.7115 3970.3944 9482.1964 88936412 TehB Metal Resistance Tellurium Geobacter uraniumreducens Rf4 4247.9874 4039.4209 28627880 CadA Metal Resistance Cadmium Bacillus sp. MSA 235 5510.8094 4641.0755 11057.2875 5065.4699 39650578 ureC Nitrogen Ammonification Rhodopseudomonas palustris CGA009 5219.0221 4882.4140 74038408 nirS Nitrogen Denitrification uncultured bacterium 4959.1250 4819.0549 4516.4347 6571.9496 5098.7803 152975268 ChrA Metal Resistance Chromium Bacillus cereus subsp. cytotoxis NVH 391-98 7966.6629 7675.0754 6701.8213 15769.8165 24967.9695 28542627 nirS Nitrogen Denitrification uncultured bacterium 9526.4271 6605.2232 6766.2615 12064.6972 4858.2993 5061.9924 152993513 CopA Metal Resistance Copper Sulfurovum sp. NBC37-1 3592.9078 54018030 narG Nitrogen Denitrification Nocardia farcinica IFM 10152 4188.9925 5286.3914 12666.2442 10363.4197 156719705 CopA Metal Resistance Copper Hydrogenobaculum sp. Y04AAS1 5145.2712 4737.5188 3797.4386 113529632 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 9705.6795 6424.4849 8463.9342 25329.0765 22425.1749 55074.0624 55870.1165 18152.1834 41998.4650 30225.2954 12529.4237 22414.0211 118703430 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 5429.5028 3853.0434 3076.8903 111281564 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 8366.5615 4885.5798 7605.1181 16883.1711 10459.7324 33837.7483 35902.9701 63879.0753 56153.3371 28343.1124 26884.3096 31118.4311 40253042 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4654.7396 14089.2543 8110.4153 125497235 pulA Carbon cycling Carbon degradataion Starch Streptococcus sanguinis SK36 5803.6230 5671.8208 3831.4503 158447948 ChrA Metal Resistance Chromium Coprococcus eutactus ATCC 27759 7593.9599 7245.3258 7510.8965 6176.5051 8328.6905 4224.5234 5055.2748 151563557 nmoA Organic Remediation Aromatics Nitoaromatics Ochrobactrum anthropi ATCC 49188 14282.9896 6553.6044 16012.8826 11482.5967 91794508 ChrA Metal Resistance Chromium Shewanella denitrificans OS217 4184.3171 89203127 trzN Organic Remediation Herbicides related compound Bacillus cereus subsp. cytotoxis NVH 391-98 18998.1016 16253.4582 14980.9393 22166.0439 8890.6170 8260.3066 11873.7388 8966.4161 87281083 nirK Nitrogen Denitrification uncultured bacterium 10118.4547 10519.1235 4190.8073 5033.1631 151280243 ureC Nitrogen Ammonification Janthinobacterium sp. Marseille 11713.4634 17371.3541 24013.4855 19517.5130 10561.7821 14383.7881 16612.4917 11185.0054 4713.0699 47575191 ChrA Metal Resistance Chromium Rubrivivax gelatinosus PM1 6018.1812 4985.9993 6470.2786 29466006 norB Nitrogen Denitrification uncultured bacterium 5886.9844 6123.8795 9389.4839 6849.4181 29293410 nifH Nitrogen Nitrogen fixation uncultured bacterium 6706.5359 5410.8420 5610.8697 94471237 narG Nitrogen Denitrification uncultured bacterium 6862.9747 8077.7773 5476.0933 116699123 bclA Organic Remediation Aromatics Aromatic carboxylic acid Syntrophobacter fumaroxidans MPOB 4831.3454 121605481 ArsC Metal Resistance Arsenic Polaromonas naphthalenivorans CJ2 3500.7885 3639.2765 6001.9318 87281050 nirK Nitrogen Denitrification uncultured bacterium 6795.0602 6303.9931 5548.5788 6646.3618 126709357 CopA Metal Resistance Copper Sagittula stellata E-37 5319.8011 5319.4414 7338.1419 10606.0989 11421.7489 3369.9158 113890133 ChrA Metal Resistance Chromium Shewanella sp. MR-7 7179.4780 6724.8345 6916.1174 4554.6557 10718.2932 6210.7221 148474840 napA Nitrogen Dissimilatory N reduction uncultured bacterium 5821.6034 3775.9363 6653.7012 8082.9255 51213.2810 82120.4392 52828.5892 6682.9420 86284315 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 17297.6980 7328.9554 9907.2366 31464.9129 18122.6537 59074.6072 68230.5790 59970.0857 81791.0111 80954.9603 36127.6348 56143.4667 114335583 dmsA Organic Remediation Others Shewanella frigidimarina NCIMB 400 7196.7774 7139.3152 5432.7712 3845.6920 4915.1182 4190.3370 6754.7612 14423343 dbdC Organic Remediation Aromatics Heterocyclic aromatics Burkholderia sp. DBT1 7525.5185 6537.0451 6834.7247 6531.8000 4892.6862 11657.2093 4233.9072 157321177 BADH Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 8249.9675 8587.2752 5736.0406 4064.9293 4565.2702 8105.1493 83835800 pcaG Organic Remediation Aromatics Other aromatics Roseovarius nubinhibens ISM 7282.6571 5489.0365 5320.8546 7408.0487 11119.9330 19954.9782 20609.6590 15978.0964 14860.7826 10591.7090 10301.8012 27531096 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Terrabacter sp. DBF63 5434.5925 6652.2287 7181.8343 4141.7744 3168.4463 119960760 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter aurescens TC1 6749.1734 18381.1735 6683.7504 13627.6529 9105.8996 16359.9825 11952.2771 16083.9496 16352.0782 6508.7535 37956516 gyrB other category Phylogenetic marker Pelobacter acidigallici 10888.7813 14967.5895 6179.0040 8512.1321 5450.0858 5106.4241 8265.0464 7693.8358 15077478 dsrB Sulphur sulfite reductase Desulfofaba gelida 5299.3069 5010.1105 9633.4427 3155.4547 6510.9264 7332.0879 24981380 CadA Metal Resistance Cadmium Pseudomonas putida KT2440 6852.7681 5779.6730 3157602 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 7579.2223 6774.5080 6321.6161 70993930 glucoamylase Carbon cycling Carbon degradataion Starch Aspergillus fumigatus Af293 5241.5786 4237.5652 6117.8611 8331.5816 4475.7090 6706.8804 20821.6073 17219.9620 7366.5458 6091.9851 6117.6819 124261494 CopA Metal Resistance Copper Methylibium petroleiphilum PM1 3802.7470 4811.6039 148570976 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 7029.4194 4153.8539 8967.6221 40254.0775 14432.4436 14211.1656 12110.9435 10791.0052 19909531 gyrB other category Phylogenetic marker Thiocapsa rosea 30366.9589 34918.9937 15298.0452 22736.2134 4836.8066 12972.8155 19072.3633 11237.2779 11719.3475 22162.8100 17284.7381 18253.8420 154253120 ChrA Metal Resistance Chromium Parvibaculum lavamentivorans DS-1 7748.6680 4499.2574 7743.2810 31371.8084 22906.4718 47879.2003 55872.8734 43848.2786 17177.0460 33385703 nifH Nitrogen Nitrogen fixation Desulfotomaculum nigrificans 4861.9279 6800.8697 10907.7024 4222.5112 17681.6929 26990.6818 5673.7575 83846568 ChrA Metal Resistance Chromium Sulfitobacter sp. EE-36 4160.8372 5430.9915 4335.2302 114561460 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 6007.7657 4391.5180 9399.9125 12499.5953 7312.2238 11929.8906 39986.8161 16840.5117 9793.7717 5332.0935 7315.4877 60683305 CopA Metal Resistance Copper Bacteroides fragilis NCTC 9343 10706.8676 10697.5741 4806.6832 8750.2924 4572.4290 9790.7557 46392598 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 8449.8652 8509.3127 7931.7936 39962604 amyA Carbon cycling Carbon degradataion Starch Magnaporthe grisea 70-15 5263.5507 4343.3287 13342.0569 14592.5981 7466.2498 12638.6603 21466.6512 15785.8197 19249.9932 7819.7152 8819.0323 10751.4988 116619393 PobA Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 10364.0570 10069.2845 4956.7804 6703.8798 5008.2126 15997.7406 36464.4874 17603.1369 14116.8039 21437.9448 15288.9182 19828.2902 27349245 pcpE Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 4934.1561 5968.4733 3924.0806 21225075 BADH Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) 6023.2344 4794.7751 5142.6993 17969.9605 5897.3776 8707.4017 7399.1716 9433.2483 86360049 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium etli CFN 42 23122.2777 24945.3172 27033.5949 36377.7408 19511.8741 23501.9659 42199.5094 46095.8514 43005.5297 25178.8232 25640.3741 17802.6041 89345586 silC Metal Resistance Silver Rhodoferax ferrireducens DSM 15236 5204.3063 3670.1124 6145.4461 9404.7790 6740.9236 9139.7681 18343.6479 57713.0957 62451.2161 5681.9029 9277.3157 56679094 nagG Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 16580.8983 10164.1460 7893.4772 16589.2983 14435.6095 34605.4222 28030.8983 32625.8297 42786.6536 52776.4299 27490.2153 61553.1649 51856565 Al Metal Resistance Aluminum Symbiobacterium thermophilum IAM 14863 7593.8563 8338.9720 4150.2671 4205.9459 148555965 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 6318.4588 5683.0239 4775.7568 9231.0308 14413.7548 11238.5200 7969.0239 8418.9373 8913.5411 9462.2089 126736229 alkB Organic Remediation Other Hydrocarbons Roseobacter sp. CCS2 6548.3673 5337.6820 3585.3692 119948118 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 4360.0746 5088.4414 5098.6603 5874.4842 6712.8720 9057.8842 7602.0790 11224.3550 5487.9409 88947140 ppx Phosphorus Phosphorus utilization Desulfotomaculum reducens MI-1 4636.2644 4074.7960 91203328 TehB Metal Resistance Tellurium Candidatus Kuenenia stuttgartiensis 8383.0770 7799.5688 70930916 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4766.1182 4873.9557 113529329 xylJ Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 7268.7738 5534.8405 4935.9721 4101.1749 83636253 linB Organic Remediation Pesticides related compound Hahella chejuensis KCTC 2396 4505.9663 10750.6396 18927.0082 21932.9339 24656.9695 115365673 atzA Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 4884.8175 4743.1168 12458.6049 16340.8940 12864.5231 18432.7648 53088.4049 44168.3104 61593.3449 8884.8252 9663.2092 15948.6990 146278697 nifH Nitrogen Nitrogen fixation Rhodobacter sphaeroides ATCC 17025 6360.0384 6243.6678 6324.7553 114050057 vanA Carbon cycling Carbon degradataion Others Streptomyces ambofaciens 5099.9687 4852.4878 6113.7830 6193.5579 2851.4503 5584.3468 8467.9457 5830.0070 4654.3634 154150413 dsrB Sulphur sulfite reductase Candidatus Methanoregula boonei 6A8 8770.9875 5009.8317 4697.2065 83025978 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 5379.3453 4090.0363 5723.5781 4032.1084 7454.7941 8918.2849 10119.8864 5089.1735 5926.2207 99082987 nifH Nitrogen Nitrogen fixation uncultured bacterium 21450.8698 6982.9579 21999.9352 48484.7164 65860.4399 38691.6572 12788.8412 55834.5925 62235.9556 90204944 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 5095.9008 5553.9967 3128.5652 12046.8692 9113.9030 83577916 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 5279.5756 114315287 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Granulibacter bethesdensis CGDNIH1 6684.1560 5134.5845 5307.6725 118472095 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 8539.6611 9345.1166 10651.9940 6827.2113 42280.1960 26925.0117 32845.0438 26166.2267 8016.3151 7690.4903 14045.0639 118424524 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 20812.9063 13325.1949 18087.8568 16667.3728 26688.0627 35072.0764 20482.1769 21339.2470 65464.0917 25571.8145 24440.2900 22082.7674 78514147 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 4138.6997 7239.8759 2683.0704 10065.6182 42431.8173 39991.8805 36337.4037 7186.3003 6858.7973 121698955 chnB Organic Remediation Other Hydrocarbons Aspergillus clavatus NRRL 1 16224.8553 13200.7586 5618.0027 28733.5321 16938.4697 27106.7704 39025.8503 12073.1426 31149.7722 33810.3524 27170.6515 24287.8564 154247259 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 6787.1547 5037.4452 5772.3833 3505.7502 8040.2544 12943.2938 8038.9149 216932 nitA Organic Remediation Aromatics Other aromatics Rhodococcus rhodochrous 8282.6783 8605.1247 12097.9538 11579.0755 3530.0681 7180.8612 12237.6655 12657.4404 9459.2724 6736.0292 32446261 gyrB other category Phylogenetic marker Rhodopirellula baltica SH 1 6211.3329 6555.0283 4432.5333 94482874 rubisco Carbon cycling Carbon fixation Telmatospirillum siberiense 4706.4770 5241.6444 111023709 TerC Metal Resistance Tellurium Rhodococcus sp. RHA1 10089.6312 9461.2756 7749.4181 16103.6941 10977.0059 13789.4699 42715.5574 11175.6402 42938.3209 8524.5596 12762.5578 21873.4295 145217419 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK 6033.8810 4436.3760 150837673 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 20562.3041 32427.8796 20656.8708 64031.9132 5302.5272 16826.3573 20782.6560 16801.6855 15335.3651 7973.9224 7069.2238 77640940 alkH Organic Remediation Other Hydrocarbons Alkaliphilus metalliredigenes QYMF 7717.2659 7158.2858 3849.5221 6793.9554 6682.0637 6896.0737 119414795 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 5767.8931 5151.1165 4678.1470 5566.6142 13942.9391 4706.1459 4524.6975 134094128 ChrA Metal Resistance Chromium Herminiimonas arsenicoxydans 5966.1598 5480.0489 114553594 czcA Metal Resistance Cadmium,Cobalt,Zinc Mariprofundus ferrooxydans PV-1 4502.2767 3730.9830 82947718 ppx Phosphorus Phosphorus utilization Magnetospirillum magneticum AMB-1 5691.9596 3801.5330 6362.2344 8750.7500 15496.2053 21994.1811 24047.6346 13644.2807 13839.2117 11204.4241 7756.0762 39995216 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 6098.4735 4305.8273 9043.1441 1653704 ZntA Metal Resistance Zinc Synechocystis sp. PCC 6803 7232.4646 4517.1765 3794.8592 3157618 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 11874.7344 8094.7600 7821.9706 4031.4097 36784508 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Photorhabdus luminescens subsp. laumondii TTO1 7467.4987 6620.5040 46520013 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8322.6541 8318.0434 18707.8536 4765.5859 42109.2136 16153.6343 22573.1147 8926.1459 84382815 czcD Metal Resistance Cadmium,Cobalt,Zinc Janibacter sp. HTCC2649 5521.9228 4950.4541 3204.7800 6703.0126 12219.1882 23267183 endoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus aculeatus 4515.8631 10082.5997 5307.3387 9645.7049 18371.2508 34391456 norB Nitrogen Denitrification Nitrosomonas marina 4792.8234 158138863 narG Nitrogen Denitrification uncultured bacterium 4831.8238 91720585 pcc Carbon cycling Carbon fixation Psychrobacter sp. PRwf-1 5275.3877 4120.0211 11278.7440 126360002 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 6060.6973 5606.1598 6852.2529 46129.1675 43925.2060 89512910 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 9353.2417 7716.0234 6226.4485 6240.0751 7458.2892 5786.6756 56478367 CopA Metal Resistance Copper Azoarcus sp. EbN1 7796.3992 7587.0076 4568.2033 5230.6851 4107.8676 52784176 TerZ Metal Resistance Tellurium Bacillus licheniformis ATCC 14580 10161.2714 9095.4373 6792.5209 11893.4268 18857.1066 4937.0824 8761.5794 69936820 benAB Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 5761.1460 5071.1222 5358.1495 2802.9709 88789176 pulA Carbon cycling Carbon degradataion Starch Nitrococcus mobilis Nb-231 9468.3209 9685.3159 6012.8785 9611.7966 3148.6293 6264.8478 6601.9680 10720.9490 156104506 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 10084.8090 7862.0127 17247.0273 21093.8825 5589.2662 6684.8004 149809649 sox Sulphur Sulphur oxidation Roseobacter sp. AzwK-3b 5324.9136 4314.5586 11036.5992 10950.8925 8095.0884 8654.9429 22219.6923 20182.4840 24560.3061 5600.1342 5897.9634 114806157 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacter ethanolicus X514 14266.8505 17253.3419 4876.8611 11662.7001 4278.3848 5934.2276 117986822 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 3568.5694 6210.2301 6465.9627 113909224 pulA Carbon cycling Carbon degradataion Starch Shewanella baltica OS195 9272.3171 9453.9087 9424.3629 12614.5361 94470897 nifH Nitrogen Nitrogen fixation uncultured bacterium 5430.4350 5702.2511 5875.5907 4679.6187 6753.3931 6822.4128 4570.6596 89068384 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 4796.4698 3360.0703 5698.2621 83746333 ChrA Metal Resistance Chromium Ralstonia solanacearum UW551 4964.2163 4160.0893 8513.5397 46106 nifH Nitrogen Nitrogen fixation Rhodobacter capsulatus 4275.3539 3847.6193 4725.3836 5320.3293 4773.7582 121535015 czcA Metal Resistance Cadmium,Cobalt,Zinc Thermosinus carboxydivorans Nor1 8442.3269 8972.9525 4860.3952 68264231 alkK Organic Remediation Others Corynebacterium jeikeium K411 7392.9605 5763.5935 151589290 ChrA Metal Resistance Chromium Methylobacterium extorquens PA1 15687.6301 7109.9605 10482.0869 16160.8424 54522.1664 30437.9022 21804.4697 8938.0914 6750.9342 76796090 ppx Phosphorus Phosphorus utilization Thermoanaerobacter ethanolicus ATCC 33223 4884.5648 5872.3745 3135.5000 17643.6838 15070.0295 6080.9461 28566177 gyrB other category Phylogenetic marker Entomoplasma somnilux 6085.8112 6189.2263 3590.0212 133910050 PobA Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 4361.2484 6819.5809 6111.6146 2544.0654 6983.5878 39736.0022 34546.7726 5855.2651 37547931 pcpE Organic Remediation Herbicides related compound Arthrobacter chlorophenolicus 4986.4540 4865.1956 21872.3339 23049.1250 11866.7660 7766.2249 9353.0051 29827891 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 10002.3244 6175.0616 5455.1510 8338.3623 10472.9654 19406.3509 24616.5879 25002.2911 25161.8528 19691.9457 21139.8424 15010.0291 56809485 nifH Nitrogen Nitrogen fixation uncultured bacterium 17167.8684 21522.1607 11092.7808 12655.2531 6127.0675 5393.9528 8232.1009 6222.4300 7924.7627 108803226 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 7400.3607 6346.4844 7329.1834 8918.4727 5289.6585 14694.1181 10914.0418 26967.6183 12269.1146 13545.3924 9622538 bbs Organic Remediation Aromatics BTEX and related aromatics Thauera aromatica 5497.9620 5231.4886 5545.6798 3386.6364 5870.5414 17761.5465 19644.8409 25667.4845 6946.5091 5995.8387 5468.4506 89082616 CopA Metal Resistance Copper Oceanospirillum sp. MED92 14065.5262 15282.8682 5854.2126 9536.9926 4437.4592 29888.0284 9837.3245 5137.0113 6717.3386 6335.3343 3169046 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Streptomyces coelicolor A3(2) 4230.2611 89335313 hydrogenase Energy process Energy process Desulfitobacterium hafniense Y51 16439.0752 9810.6771 20259.1022 16066.7355 3982.5258 86166949 ZntA Metal Resistance Zinc Synechococcus sp. RS9917 6002.6639 4473.2400 9568.0741 3625.1539 12845.6197 32835.0217 30112.0353 38588.4255 17810.7508 9118.0552 76874183 SilA Metal Resistance Silver Pseudoalteromonas haloplanktis TAC125 19553.7681 16165.4153 7092.8798 19952.9057 16796.4449 38761.0030 57562.8029 10233.1519 33073.0156 28739.9331 23035.1105 18891.4259 60326762 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4559.8857 5444.4346 4332.9444 5286.7936 12329.6215 15385.5973 41637.7551 25727.2641 6204.0906 14566.7216 158331546 ChrA Metal Resistance Chromium Azorhizobium caulinodans ORS 571 5324.1982 10246.0684 12531.7463 6894.8583 11540.3838 66851757 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 6561.0958 6107.9547 2687.5129 34186.8367 10127.4783 110285689 nreB Metal Resistance Nickel Mesorhizobium sp. BNC1 3913.1486 157374666 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 9115.9874 6457.6509 6694.1770 20852.7108 33812.1723 37930.2175 50530.4413 13581.4706 43134.0252 43020.8310 15905.4466 37837.5870 85707014 czcA Metal Resistance Cadmium,Cobalt,Zinc Roseovarius sp. 217 4866.7919 2913.6735 111281411 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 4011.1719 14389261 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5254.0055 4198.6457 2814.3234 5665.1137 11784.0372 16329.7514 5916.0856 6342.8296 7314.6168 5760.8733 91204460 alkK Organic Remediation Others Candidatus Kuenenia stuttgartiensis 11473.2264 8770.7478 5401.9732 37548710 nifH Nitrogen Nitrogen fixation uncultured bacterium 6392.3255 6955.5594 151581714 ureC Nitrogen Ammonification Opitutaceae bacterium TAV2 5577.0397 6155.9323 9774.2776 9462.4073 5628.3167 4849.3880 85689806 CadA Metal Resistance Cadmium Erythrobacter sp. NAP1 5006.1339 6440.4655 60100879 nifH Nitrogen Nitrogen fixation uncultured bacterium 6198.2804 6678.8746 3885.6501 27350592 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 5076.6816 4437.5128 4325.8149 50952851 lip Carbon cycling Carbon degradataion Lignin Trametes versicolor 5236.2894 9129.8441 4432.9851 6388.5930 8834.8912 13296.9132 3775.5391 72161237 amyA Carbon cycling Carbon degradataion Starch Thermobifida fusca YX 4777.6612 4646.0942 6638.4083 10886.7221 8725.0047 8128.0860 4201.8151 99030482 ppk Phosphorus Phosphorus utilization uncultured bacterium 5772.9440 5862.8977 88778030 endochitinase Carbon cycling Carbon degradataion Chitin Reinekea sp. MED297 8811.0686 9023.1819 12788.4679 14251.7075 66108.3657 6010.3190 111152764 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 3995.5285 4750.0260 6864.5566 152146172 rubisco Carbon cycling Carbon fixation Beggiatoa sp. SS 7911.9066 7289.1373 9775.4917 8970.6807 5248.8989 154243973 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 9096.5990 4041.2557 4367.3754 47742.9000 16426.0477 27353880 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 6107.2972 6886.6831 10104.0801 6874.9810 14389189 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8867.5046 11673.9217 6853.4818 3785.3724 5860.5081 77019684 czcD Metal Resistance Cadmium,Cobalt,Zinc Rhodococcus erythropolis PR4 5693.3710 6131.3106 4192.1896 30731.1901 12834.6943 87135187 vanA Carbon cycling Carbon degradataion Others Novosphingobium aromaticivorans DSM 12444 14924.1385 16151.0118 20834.9907 16001.7012 4406.5864 7717.9055 9013.8224 8070.6171 9279.2643 7965.1868 116505035 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Coprinopsis cinerea okayama7#130 3639.6555 63994.3707 10426.0022 11117.8879 85831632 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Leeuwenhoekiella blandensis MED217 50007.7445 68076.2460 30858.3698 52046.5742 38685.6201 84110.2822 111790.5597 102320.5449 61576.8516 37398.8327 29223.3835 37346.1424 119536197 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 8362.2146 9458.1023 4734.3677 113881425 ppx Phosphorus Phosphorus utilization Synechococcus sp. CC9311 7373.7098 7084.2254 7034.9429 25387.2372 23775.4672 116254841 nmoA Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 5687.4854 5557.2742 6104.9051 5230.4505 4518.7716 6956.3493 8783.8719 146279248 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 4393.2678 87331854 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 7233.6344 4240.5269 5652.2113 5233.3728 19063.0190 27192.3435 38455.2809 29340410 ara Carbon cycling Carbon degradataion Hemicellulose Bacteroides thetaiotaomicron VPI-5482 6964.1626 6622.1389 38505862 ArsC Metal Resistance Arsenic Synechocystis sp. PCC 6803 4959.2879 4885.1629 154160944 rubisco Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 5092.0787 6528.2591 9763.3203 37925735 nifH Nitrogen Nitrogen fixation uncultured bacterium 5390.9198 4793.9213 112821460 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 9395.7903 4286.3236 20815.3082 28691.0338 7608.9748 23556.3711 75341.9030 64891.7437 78530.8415 6366.3452 14980.4721 13712.6432 145306102 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 8704.0273 7989.7087 4490.6072 6933.9995 4028.1323 7376.1579 146308856 pcc Carbon cycling Carbon fixation Pseudomonas mendocina ymp 5259.1758 4412.6178 3622.0042 82410595 amyA Carbon cycling Carbon degradataion Starch Nitrosospira multiformis ATCC 25196 6369.9518 5753.3568 5289.2677 32817.2565 34949.8850 34202.8469 66044063 TerZ Metal Resistance Tellurium Pseudomonas syringae pv. syringae B728a 4376.4877 5523.1677 3092.4768 9471.0071 3157614 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 6862.0148 6766.2657 5863.8335 29525.3138 14087.1993 11179.7223 4898.7325 78193355 ppx Phosphorus Phosphorus utilization Geobacter metallireducens GS-15 3966.7371 4441.8636 126464359 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17029 12249.3939 13568.6857 15622.0626 42298.1411 9402.4485 12634.1488 18707.7083 32154.4890 21503.5910 13536.9390 10683.0535 14859.8296 76056949 narG Nitrogen Denitrification uncultured bacterium 8780.9479 22930.4665 31125.3415 49557.0139 40735.2257 63756.0858 25813.9290 14025.6954 17214.5637 44829087 nifH Nitrogen Nitrogen fixation uncultured bacterium 3835.3497 52079231 amyA Carbon cycling Carbon degradataion Starch Bacillus licheniformis ATCC 14580 6604.1662 7335.5975 4149.2646 18527.8269 5585.4346 12724358 ArsC Metal Resistance Arsenic Lactococcus lactis subsp. lactis Il1403 4051.3269 5389.6664 148253971 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 11232.4363 7195.2300 27267.7605 104565.7857 60764.1958 73673.6622 73188.0903 82615.0630 79713.5550 78365.2241 50200.8803 69100.1441 119484283 xylF Organic Remediation Aromatics BTEX and related aromatics Lyngbya sp. PCC 8106 5154.8579 12078.9462 26286.7322 9500.3313 3856.5309 7960.0148 8153.4225 117674730 dmsA Organic Remediation Others Yersinia pseudotuberculosis IP 31758 5982.2970 9899.1386 5539.2657 8321.8531 13570.7364 52078808 TerZ Metal Resistance Tellurium Bacillus licheniformis ATCC 14580 15936.7778 12648.8865 7445.2152 9126.7638 11803.1624 25486.9518 27397.9728 17647.7274 12991.5077 10735.9515 12804.9197 16332.4130 154160794 tfdA Organic Remediation Aromatics Chlorinated aromatics Xanthobacter autotrophicus Py2 3144.4587 8739.0889 8089.8324 70730980 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens Pf-5 16380.4355 15667.7305 8641.1496 10935.3146 3732.5807 27375227 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 4149.8902 3864.3112 3850.3493 7197.0158 5702382 TerZ Metal Resistance Tellurium Proteus mirabilis 7428.2937 4876.4979 15357.0453 16892.1507 84668305 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 4255.0171 3672.9774 148843194 linB Organic Remediation Pesticides related compound Planctomyces maris DSM 8797 3632.6087 3610.9360 28497.2672 86359309 ZntA Metal Resistance Zinc Rhizobium etli CFN 42 4126.2771 4794.1941 91975984 CopA Metal Resistance Copper Rhodopseudomonas palustris BisB5 4917.8335 6875.9512 7422.2112 9409.0261 7037.1247 4811.4091 4959.0571 89512616 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 6397.5895 5849.8369 4311.1803 11803.9718 7968.1204 8295.4858 41851.1613 11247.8448 40261.8991 14129.5851 18551.9285 74313.1951 10863143 nifH Nitrogen Nitrogen fixation marine stromatolite eubacterium HB(0697) A101A 8608.8572 3759.6786 13594.2280 17544.1620 85690.1035 19707.4777 41488.8603 11019.2081 145604653 linB Organic Remediation Pesticides related compound Magnaporthe grisea 70-15 9140.8318 7895.2942 4612.0094 7187.9036 11814.1936 11555.2086 29106.0599 25715.5945 12063.2296 9579.4216 11406.3246 68234636 amyA Carbon cycling Carbon degradataion Starch Frankia sp. EAN1pec 8958.2026 7332.8931 4845.1807 116181638 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Chaetomium globosum CBS 148.51 6439.7951 7159.1128 5392.8138 17120.7755 19024.9512 8949.2784 13890.9453 158138741 napA Nitrogen Dissimilatory N reduction uncultured bacterium 5544.5990 86282167 xylanase Carbon cycling Carbon degradataion Hemicellulose Rhizobium etli CFN 42 9964.2676 7446.4596 6900.8216 22285.1508 5941.2248 18761.7436 30926.5508 23329.5128 51667.5027 25475.1343 16210.5759 17510.4550 37703775 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coprinopsis cinerea 4688.7090 5687.6827 156719686 mer Metal Resistance Mercury Hydrogenobaculum sp. Y04AAS1 10333.6981 5715.0550 5512.0350 99081920 ZntA Metal Resistance Zinc Silicibacter sp. TM1040 6283.1848 7645.0932 8126.4566 3060.4603 32447418 czcA Metal Resistance Cadmium,Cobalt,Zinc Rhodopirellula baltica SH 1 7167.6133 5637.4907 3985984 gyrB other category Phylogenetic marker Nitrosomonas sp. 4798.9732 4900.4420 3165372 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 5446.7463 5728.0151 124488337 narG Nitrogen Denitrification uncultured bacterium 8165.1567 4357.0473 9395.6589 4265.7656 33574.4710 23184.5254 13878.7094 6705.2563 7596.9431 27355922 exaA Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 12486.3413 20518.9408 6733.1540 23586.5157 13818.5198 24618.1663 59045.0721 24103.2232 11319.7524 13519.1989 11303.0583 11481.1447 117998472 TehB Metal Resistance Tellurium Comamonas testosteroni KF-1 6121.3181 5258.9212 10179.2596 17823.5218 25159.1152 6668.0519 158187218 nagL Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. NCIMB 10467 12876.0105 13305.6193 17194.9503 21864.6336 4824.3753 7065.2215 21513.5053 16005.7992 11449.7983 7760.1300 119671725 exaA Organic Remediation Chlorinated solvents Azoarcus sp. BH72 10523.8298 9631.0289 5063.4969 7394.7438 4205.1042 70729461 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas fluorescens Pf-5 4980.2532 4582.7704 83025990 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 4049.2554 4207.2795 4371.5683 4978.2510 14289338 benAB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. 19070 4470.8985 3852.1424 3717.7268 5793.4897 8411.7774 5303.8504 5064.6993 6688.7526 7579.7042 83844818 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 4338.4609 3463.1653 3582.3014 47452.4188 42234.6793 60155.3239 47988.5259 118170987 bphC Organic Remediation Aromatics Polycyclic aromatics Mycobacterium smegmatis str. MC2 155 4038.6939 26986924 cytochrome Energy process Energy process Pseudomonas putida KT2440 4709.4485 4762.2341 121604041 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 7557.6600 11870.8428 7372.1562 10643.9698 3252.3722 5171.5041 4986.5496 5376.8391 118661068 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 9424.5321 4172.7640 7887.8403 5440.5541 9170.4614 49975.6168 10308.6669 26116.9428 22555.1720 17186.7413 17997.6584 86285622 xylanase Carbon cycling Carbon degradataion Hemicellulose Sorangium cellulosum 9633.3838 5990.3469 14559.3469 13687.4675 3182.5044 134142977 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 35331.4402 31818.0900 18336.1012 31476.0587 2794.6328 5751.9654 10493.9293 7411.5695 63081994 nosZ Nitrogen Denitrification unidentified bacterium 11971.0458 7745.9434 7621.3951 18366.6347 27904.4151 51105.5766 51091.6159 35137.2917 42165.3780 16780.3795 22260.9239 103488536 ChrA Metal Resistance Chromium Sphingopyxis alaskensis RB2256 4540.7530 3407.4927 7456.0270 9407.7378 13167.8773 115422656 ChrA Metal Resistance Chromium Bordetella avium 197N 9058.4729 6682.4218 110931976 nifH Nitrogen Nitrogen fixation uncultured marine bacterium 4313.5447 34581415 pcc Carbon cycling Carbon fixation Rickettsia sibirica 246 5374.7915 4074.3910 158443116 ChrA Metal Resistance Chromium Faecalibacterium prausnitzii M21/2 5521.1934 4555.9747 27382750 exaA Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 6160.0862 5757.2884 6326.5498 10535.5201 4826.5571 11614.6391 13724.9552 14132.8486 15811.8485 16512.0921 7679.3465 13720.5150 82568127 gyrB other category Phylogenetic marker Thermoactinomyces intermedius 7330.8144 7134.6789 3540.9615 144897350 CopA Metal Resistance Copper Magnetospirillum gryphiswaldense MSR-1 4385.7221 5027.9660 2536.3755 5659.7232 14558.4839 10796.9428 6023.5747 3157590 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 4557.0705 6386.4027 124010469 TerZ Metal Resistance Tellurium Microscilla marina ATCC 23134 3146.8479 7718.8402 12915.6711 5318.2100 13687.0296 15961.9889 11969.8129 17810.8318 8719.1813 8371.5264 28379475 BADH Organic Remediation Aromatics Other aromatics Lactobacillus plantarum WCFS1 3823.9965 157850546 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 6893.8627 4475.4111 6312.6723 11743.3367 4522.1714 19616.5745 24247.0181 16401.1526 115371535 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coprinopsis cinerea okayama7#130 11211.4655 7767.1307 6898.3038 7365.3764 17284.6022 7108.8432 14465.9465 22449955 nifH Nitrogen Nitrogen fixation uncultured bacterium 25608.7441 20570.2853 35677.2097 62820.0077 3894.1213 6142.5221 6123.2647 6596.3615 6361.4703 3157506 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 8683.5697 6025.1115 10078.5737 8981.3350 7407.6236 121594700 silC Metal Resistance Silver Acidovorax sp. JS42 15823.1751 11348.8422 12978.4766 10129.8205 15853.6506 38307.6449 24668.3955 17675.7078 17289.0403 14056.0843 9524.5122 11516.2571 54022124 ZntA Metal Resistance Zinc Nocardia farcinica IFM 10152 21601.5308 20737.9955 10178.5200 11528.4306 9277.6228 18199.9163 12499.6153 8234.8425 15245.5636 25973.1237 14817.7332 14869.9833 119872935 CopA Metal Resistance Copper Pyrobaculum islandicum DSM 4184 7009.8407 6245.9944 9082.7624 10203.8731 3829.3985 7289.2938 10746.9275 9450.9898 8978.0511 5593.2879 8019.8054 88919569 CopA Metal Resistance Copper Acidiphilium cryptum JF-5 7934.3570 7062.6378 5358.4649 8517646 sox Sulphur Sulphur oxidation Paracoccus denitrificans 4308.1900 4111.6918 9957.7276 10443.2410 5324.4129 5573.8449 8126.4577 5258.0126 73749235 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 6735.9169 7194.2193 8622.4460 32170713 nagG Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces sp. WA46 4785.0928 4393.6575 4346.5736 2976.7685 6384.9315 8703.4249 5803.1355 87199889 vanA Carbon cycling Carbon degradataion Others Novosphingobium aromaticivorans DSM 12444 5284.2801 5631.3044 37456.3917 25393.2952 153890549 ara Carbon cycling Carbon degradataion Hemicellulose Opitutaceae bacterium TAV2 9592.4140 8460.8773 5433.1676 106885867 mannanase Carbon cycling Carbon degradataion Hemicellulose Clostridium phytofermentans ISDg 5033.3005 12995.1215 28558906 nreB Metal Resistance Nickel Ruegeria sp. PR1b 5228.9866 4961.4469 9756.4802 11659.2219 14369.4306 29582.2213 15448.0827 22136.3744 7339.7525 5117.1852 29605619 linB Organic Remediation Pesticides related compound Streptomyces avermitilis MA-4680 14519.0450 9935.6496 7967.7332 27901.7093 10267.8237 11512.4911 77165.2321 18787.5733 49044.9442 23469.3196 12540.2987 89350026 tfdA Organic Remediation Aromatics Chlorinated aromatics Xanthobacter autotrophicus Py2 4171.9208 3682.5515 4610.6282 9100.2517 4982.8854 4581.2575 10073.6984 5632.4713 85823564 ZntA Metal Resistance Zinc Roseobacter sp. MED193 10635.2483 8172.5744 13437.1280 5366.8757 28869834 pheA Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 10681.9102 6436.5116 6946.9017 7118.1249 3960.6040 33571472 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella pertussis Tohama I 6329.8072 6693.5898 10833.2922 5543.9504 37530.2017 22437.6982 58329.6411 45076.9895 27605.4365 13140.0016 20323.9114 120604835 silC Metal Resistance Silver Acidovorax sp. JS42 3019.0689 91690340 rubisco Carbon cycling Carbon fixation Burkholderia xenovorans LB400 6650.0131 5573.5261 7736.7567 11583.5668 16310.2524 14979.2099 9786.6483 11227.9562 8648.0005 8199.5014 63029733 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 13261.0045 16214.2876 11558.0397 12130.8990 4565.9031 10426.8312 8474.8201 12747.0124 4982.4797 6409.1655 83017277 gyrB other category Phylogenetic marker Microbulbifer sp. MBIC06448 5239.6102 4727.1044 5928.0968 5450.4663 3281.4149 6117983 amoA Nitrogen Nitrification Nitrosococcus sp. C-113 5375.1538 22330.2047 17129661 xylF Organic Remediation Aromatics BTEX and related aromatics Nostoc sp. PCC 7120 10365.9669 8477.7014 19918.5339 29160303 exoglucanase Carbon cycling Carbon degradataion Cellulose Acremonium thermophilum 5623.4426 5123.1170 17080.3518 10367.0512 17314.5640 62537.1329 74365.3207 5773.6864 8938.2958 88817073 ChrA Metal Resistance Chromium Pseudoalteromonas tunicata D2 8108.2222 5515.5608 4495.8633 126739877 phn Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 7672.9760 5917.7851 154274764 endochitinase Carbon cycling Carbon degradataion Chitin Ajellomyces capsulatus NAm1 5476.9805 20278795 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4019.0583 4360.2993 56908040 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 5655.1983 4835.5061 4848.6002 17391.2220 11078877 gyrB other category Phylogenetic marker Pseudomonas asplenii 21910.6929 24382.7685 12657.6433 15431.0528 4398.3368 11204.3105 17923.0228 11670.5165 16474.3174 19612.3066 12111.5299 10480.4943 118053655 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 4353.0585 8640.8494 157074838 trzN Organic Remediation Herbicides related compound Streptococcus gordonii str. Challis substr. CH1 4527.8121 4377.6503 7217.2016 68200092 nmoA Organic Remediation Aromatics Nitoaromatics Frankia sp. EAN1pec 9444.1457 16029.6749 10658.9094 12541.5553 3828.3742 9686.7564 6218.3240 157323029 akbF Organic Remediation Aromatics BTEX and related aromatics Serratia proteamaculans 568 8336.9355 7830.8594 8276.9886 3785.3584 5077.5009 7844.2143 9149.0406 4946.8281 83311795 rubisco Carbon cycling Carbon fixation Magnetospirillum magneticum AMB-1 8600.1870 8975.5748 4317.3474 3206.3666 28190.2520 11718.7085 9852.4362 14841.7062 6228.2682 119376225 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 5461.0839 7594.2654 5128.7349 7811.4029 55772530 pcc Carbon cycling Carbon fixation Thermus thermophilus HB8 4927.0639 6029.6292 49484.1808 31342.8883 77378433 nirS Nitrogen Denitrification uncultured bacterium 6204.5129 7178.4212 7058.5965 12093.1647 4807.4341 8115.7249 6403.3163 5570.2380 27349072 gyrB other category Phylogenetic marker Bradyrhizobium japonicum USDA 110 4441.0413 5147.5172 94471277 narG Nitrogen Denitrification uncultured bacterium 5148.8031 5597.7227 9264.8941 6866.8133 23969.7313 13098.9797 114740570 ppx Phosphorus Phosphorus utilization Hyphomonas neptunium ATCC 15444 7926.2766 6605.0772 3573.9048 5100.7418 94971855 pcaG Organic Remediation Aromatics Other aromatics Deinococcus geothermalis DSM 11300 5699.9590 7636.2510 5446.0197 3421.4591 4922.2873 115430534 rd Organic Remediation Chlorinated solvents Desulfitobacterium dichloroeliminans 7851.0366 9432.2007 5389.4072 10386.7940 5367.9407 13395.3922 18761.9547 21478.2350 23009.6625 60213.9355 88191351 arsB Metal Resistance Arsenic Campylobacter jejuni subsp. jejuni 84-25 17922.7438 14083.0450 8912.4505 2992.6031 117925649 CopA Metal Resistance Copper Magnetococcus sp. MC-1 14166.1353 12983.5095 16935.8096 35789.9438 12173.2805 16156.5885 22427.2124 32052.1800 39572.2788 13507.6856 34731.5866 41224.1285 62149172 nifH Nitrogen Nitrogen fixation uncultured bacterium 5775.9649 126718511 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 9217.3350 4878.0157 12163.2120 157404569 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 10909.9040 9868.0443 11773.8145 6134.2677 14394.4448 5310.3711 6422.2552 5270.2977 115379096 xylF Organic Remediation Aromatics BTEX and related aromatics Stigmatella aurantiaca DW4/3-1 4799.6536 6961.2038 33576186 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 3413.8971 4654.6977 2703.4949 10941.4634 7086.4231 5966.3038 87311919 amyA Carbon cycling Carbon degradataion Starch Blastopirellula marina DSM 3645 4754.3000 4810.8987 11394.0322 8790.2989 5005.8541 6681.7578 8043.5143 8272.6665 9446.8257 106881492 TerZ Metal Resistance Tellurium Psychromonas ingrahamii 37 7458.4925 7943.7212 11224.6378 11330.1958 5509.0673 21832.2361 19733.0205 30017.0153 5790.8216 113725650 ureC Nitrogen Ammonification Sinorhizobium medicae WSM419 4413.0457 4170.7653 4667.3953 38380.7167 14648.3687 13061.2475 3803.3673 110612681 gyrB other category Phylogenetic marker uncultured bacterium 34477.9507 34172.8422 13529.3435 33687.3855 6077.8471 35213249 tfdA Organic Remediation Aromatics Chlorinated aromatics Gloeobacter violaceus PCC 7421 4076.7643 3310.2434 5142.7606 157363044 pcc Carbon cycling Carbon fixation Thermotoga lettingae TMO 8027.7683 6757.9352 8995.0756 20000.3031 3620.6381 8246.4255 29665.1512 54444.3536 12542.9301 22482.7505 115402751 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 6046.2464 4958.2730 3613.7276 8516.8230 116748019 nitA Organic Remediation Aromatics Other aromatics Syntrophobacter fumaroxidans MPOB 5131.5108 5408.8911 5551.9382 9482.6768 117164963 ppx Phosphorus Phosphorus utilization Streptomyces ambofaciens ATCC 23877 12616.3956 4021.0351 7791.4826 18998.1392 10513.2799 48005.7701 57977.2127 79252.9299 73913.0028 36498.4821 11772.9931 28565.9312 124363594 CopA Metal Resistance Copper Methanocorpusculum labreanum Z 6986.3483 6617.5943 13732.2182 15574.0748 17886.8176 6335.5350 11724.4717 109632807 nirK Nitrogen Denitrification uncultured bacterium 17779.6213 12303.7108 8990.6844 12869.6903 3401.6854 3355.2650 4513.0800 150029098 ureC Nitrogen Ammonification Sinorhizobium medicae WSM419 5816.5959 6727.2046 11334.0577 24908.8353 9532.0012 55267.2272 24847.1823 53205.7868 9407.7825 10587.7437 126628241 CopA Metal Resistance Copper Marinobacter sp. ELB17 11092.7865 14779.5083 18676.9787 27468.9050 6206.7447 8062.5536 18547.9145 17154.9784 14045.5475 7963.7912 8028.4462 46196285 CopA Metal Resistance Copper Thermus thermophilus HB27 5757.5414 4349.9905 139003249 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 6289.5164 7026.1204 5333.5746 62149208 nifH Nitrogen Nitrogen fixation uncultured bacterium 6816.1406 8851.4855 4307.1582 106764027 CopA Metal Resistance Copper Psychromonas ingrahamii 37 5905.3328 4619.4938 30568.9362 7230.0063 6579.7871 23312.5606 11588.8918 8993.3240 139478563 mer Metal Resistance Mercury uncultured soil bacterium 8316.3996 4886.9416 6928.1034 12867.3706 4264.4181 14117.0963 37251.3468 21362.1494 44196.1826 12290.1511 7487.8336 15926.6333 84502231 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 13842.4107 11825.1811 15940.8442 6827.1681 11366.0908 34707.7772 19644.5565 18684.9025 11402.4297 10172.5019 7782.7450 118468324 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium smegmatis str. MC2 155 3716.9114 4648.9624 118027568 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 6233.6702 5369.3959 8426.5068 6678.8921 10879.5180 9596.4867 10593.7251 12931.7370 77995090 pcc Carbon cycling Carbon fixation Carboxydothermus hydrogenoformans Z-2901 17809.1027 17155.1370 11417.5275 11877.7374 5126.0788 5548.4076 117985945 silC Metal Resistance Silver Burkholderia phymatum STM815 6133.3484 7911.3695 9623.3154 13105.9543 20359.0934 9338.9645 5384.4042 150398029 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 6113.7941 6621.8943 89349355 nagG Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 7124.6078 5581.8967 5102.3080 109641682 dmsA Organic Remediation Others Desulfitobacterium hafniense DCB-2 7915.9323 7831.4549 6612.1261 3485.5834 116208630 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Chaetomium globosum CBS 148.51 4518.8363 3554.2773 5901.4629 14163.5000 5672.7306 10359.0421 37680.2765 30218.4157 146337804 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 5041.1404 111613455 phn Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 6657.3291 7364.4360 6387.6302 10543.8148 6643.1367 10155.3528 9072.5912 13158.8625 8425.1112 111220842 CDH Carbon cycling Carbon degradataion Cellulose Frankia alni ACN14a 13295.7774 15035.5054 9365.8502 10224.9631 43956.5830 89019.7725 126517.0270 91097.5712 34544.2421 17795.0224 27142.1116 53129.5936 139003282 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 19612.6634 14856.9584 41572.3375 53870.8007 5362.6185 5975.7716 11206.0678 8454.5188 8153.1259 11857.2492 78776860 ppx Phosphorus Phosphorus utilization Thiomicrospira denitrificans ATCC 33889 12941.5915 13438.1022 10043.5709 14947.0948 10006.5303 9540.9334 30859.2357 11694.1808 14541.3719 12907.6240 13424.2410 1652801 gyrB other category Phylogenetic marker Synechocystis sp. PCC 6803 4989.7134 3395.7171 6963.2254 6041.1114 5533.4093 13203.8264 10723.5673 7982.8059 16124558 czcD Metal Resistance Cadmium,Cobalt,Zinc Caulobacter crescentus CB15 4184.3927 6313.2806 6659.1602 4032.1382 7209.9915 23605.2670 25489.4020 9748.3317 6119.6947 8216.6666 89360675 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 4255.6349 4916.5003 4230.1026 12809.9585 22588.3829 10471.0668 23388.9239 26596.6762 15230.2101 39935125 czcA Metal Resistance Cadmium,Cobalt,Zinc Rhodopseudomonas palustris CGA009 11843.8001 11139.3552 6415.3115 10272.3368 19823.9090 23163.8312 22358.5104 23569.4275 30582.7130 19141.0053 12022.9303 15290.6751 118003060 nagG Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 11067.4358 5934.6717 13164.4452 6928.1394 6595.2558 15722.4392 6849.7365 84690192 czcD Metal Resistance Cadmium,Cobalt,Zinc Parvularcula bermudensis HTCC2503 5325.8696 8013.7367 4953.9882 8783.9590 8265.7534 22036058 bphA Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. YK2 5163.8519 4694.2403 116248777 Catechol Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 13996.9614 8396.6137 4085.5491 22782.3660 23754.4727 81465.3670 63023.4987 50351.7334 32235.1266 59659.4423 86341.2820 135743.0279 67532411 ChrA Metal Resistance Chromium Burkholderia vietnamiensis G4 9118.1480 10803.9617 7347.0532 14783.5594 25995.6188 19716.3859 20975.4172 13360.7536 22434.8705 12096.8734 13779.6049 158329927 tftH Organic Remediation Aromatics Chlorinated aromatics Azorhizobium caulinodans ORS 571 4935.2195 5501.1379 24827.7320 10816.8565 14209.3118 7556.5887 116253959 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Rhizobium leguminosarum bv. viciae 3841 22831.4619 20526.6201 20448.5368 20872.0069 4693.0632 5906.4878 47648.5041 109645692 trzN Organic Remediation Herbicides related compound Desulfitobacterium hafniense DCB-2 7661.2328 6925.9496 3426.3906 149125957 xylJ Organic Remediation Aromatics BTEX and related aromatics Methylobacterium sp. 4-46 6825.2349 5859.2232 4583.2617 3851.1340 7466.2722 5825.8492 3739.6485 5882.4771 39997233 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter sulfurreducens PCA 24227.4240 28450.8894 15321.7732 21326.7208 6242.2742 9229.6810 19908.4162 12746.1518 14603.5089 17561.3464 12790.0070 14773.9416 118758991 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 5209.5659 4073.9045 5084.7681 3542.2212 8727.9408 10305.9999 8965.9608 6297.7663 9038.6841 5350.0437 56068671 merT Metal Resistance Mercury Ralstonia metallidurans CH34 7137.4505 4258.3665 6369.1249 157682520 CopA Metal Resistance Copper Bacillus pumilus SAFR-032 23939.7347 18429.6564 20280.0833 57411.1377 33737.3650 32655.3703 48651.2732 42774.5954 26879.1448 36829.1111 35822.2906 35780.2500 4584498 czcD Metal Resistance Cadmium,Cobalt,Zinc Streptomyces coelicolor A3(2) 4140.5111 5607.3225 5687.3077 3184044 bphA Organic Remediation Aromatics Polycyclic aromatics Ralstonia sp. JS705 4185.4936 3778.8180 4012.7910 8073.2641 84683974 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 6384.9154 8961.6898 6498.4934 6734.5863 86139191 phtA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 8369.6700 10018.6468 12146.9367 14754.1150 7591.1701 56314735 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 35640.0969 19825.1090 24527.4752 20865.4062 19502.6709 45446.4292 30105.7221 13720.5527 57932.7315 98347.2605 85521.6372 152981838 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille 4460.1035 2949.7689 4561.5360 89352825 phn Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 5937.3117 4854.4038 156042750 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Sclerotinia sclerotiorum 1980 6626.3332 10174.9822 10520.7702 11841.6917 119376333 nmoA Organic Remediation Aromatics Nitoaromatics Paracoccus denitrificans PD1222 10968.6460 9997.3942 7719.5222 8785.4680 5945.8705 38537139 ZitB Metal Resistance Zinc Populus balsamifera subsp. trichocarpa x Populus deltoides 5663.3352 6876.8076 119956954 ophC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 5270.0379 5734.1476 5164.7870 116096307 ppx Phosphorus Phosphorus utilization Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 7300.2404 5283.4677 13193.4722 3358.6305 4385.9235 20265.6309 126709599 CadA Metal Resistance Cadmium Sagittula stellata E-37 4183.8421 4446.4320 87286596 glucoamylase Carbon cycling Carbon degradataion Starch Blastopirellula marina DSM 3645 6293.2447 6492.9609 3975.5117 6244.1507 7756.6840 84665608 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 5542.2863 4709.1614 14499.4424 9105.4527 10412.0789 2196814 gyrB other category Phylogenetic marker Shewanella putrefaciens 13522.3499 14689.3985 9735.8375 9171.2853 3046.2541 4670.9471 7231.0063 6909.7975 151575999 ureC Nitrogen Ammonification Ralstonia pickettii 12D 8620.6832 6760.5064 13804.7799 36354.3034 17041.9459 22784.4884 83251.5509 38413.4593 54744.4456 13138.5914 8868.3208 11030.9368 156448630 chnB Organic Remediation Other Hydrocarbons Methylobacterium chloromethanicum CM4 4561.0027 4275.3142 5212.0926 5685.2437 21393.6090 67920647 dehH Organic Remediation Chlorinated solvents Crocosphaera watsonii WH 8501 10334.6428 8941.7677 5463.6444 145047142 nbzB Organic Remediation Aromatics Nitoaromatics Polynucleobacter sp. QLW-P1DMWA-1 3924.3394 15896888 CopA Metal Resistance Copper Clostridium acetobutylicum ATCC 824 4734.6862 4860.5157 5313.4029 27352759 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 3994.7308 145230746 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger 5862.8824 5947.4949 5908.3110 6535.6613 23519.2689 7387.0667 12831.1592 10840.3554 7275.8724 156254587 nosZ Nitrogen Denitrification uncultured bacterium 5227.1672 5798.2468 121517325 CopA Metal Resistance Copper Candidatus Desulfococcus oleovorans Hxd3 3835.9646 88187735 CopA Metal Resistance Copper Methanospirillum hungatei JF-1 4696.4875 9014.0439 22644.4976 19298.7817 35808.8991 69770.1621 68685.8746 78086.9884 44834.4387 13637.1318 29299.2231 21221778 ppx Phosphorus Phosphorus utilization Streptomyces coelicolor A3(2) 3620.2116 119374842 pbrA Metal Resistance Lead Paracoccus denitrificans PD1222 4344.3971 139003062 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 6347.1436 12683.6078 43282.3183 12676.5565 48225.8309 56639.4935 78352.3268 87545.5189 67699.9823 16828.1634 55783.7760 119957191 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 6863.8958 5226.0702 27665.2875 145596104 xylA Carbon cycling Carbon degradataion Hemicellulose Salinispora tropica CNB-440 3814.4063 5005.5801 6574.1695 91801739 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 5649.9775 62003523 narG Nitrogen Denitrification uncultured bacterium 4417.1457 116671582 tfdA Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. FB24 3764.4711 118424359 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6659.4556 4940.8790 119225946 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 3452.4135 7983.8211 10434.4679 11204.5640 16501.7589 26675.9576 12444.5269 13182.3680 6406.8085 87118280 amyA Carbon cycling Carbon degradataion Starch Marinomonas sp. MED121 4438.9790 6458.9569 9432.9667 12508.5663 35523.4679 10340.9422 16885.8552 7064.8174 22436.2799 86555596 ppx Phosphorus Phosphorus utilization Synechococcus sp. JA-3-3Ab 4636.0262 4156.5139 8575.0826 14548.6386 8973.9674 5862.8129 7413.1593 8389.4747 6241.4181 77690377 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 5178.5416 153004576 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 4283.0151 5355.7469 14444.9629 5999.9577 9254.0876 17205.8192 8052.6034 6449.8268 110335215 CopA Metal Resistance Copper Acidovorax sp. JS42 3577.0031 118655662 czcA Metal Resistance Cadmium,Cobalt,Zinc Burkholderia multivorans ATCC 17616 3408.1801 4283.4077 4003.5822 119473513 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 5096.2344 5251.8969 83631229 ppx Phosphorus Phosphorus utilization Hahella chejuensis KCTC 2396 4298.9739 48557.2060 13244.2725 43724.4572 84943.6111 22978.4879 35079.6095 31117.7111 18493.8882 38804.0347 17742853 nirK Nitrogen Denitrification Agrobacterium tumefaciens str. C58 9276.5515 3488.9192 4286.6073 10161.2295 12732.8671 8123.1907 157704433 dfbA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. LB126 4301.2155 10077.7578 31560.4454 4764.3485 7932.6502 24578.5286 22646.6495 28801.9746 5534.5503 5880.9848 25045822 cpnB Organic Remediation Other Hydrocarbons Rhodococcus sp. T3G6 4489.8930 3703.1963 6714.6054 18560.6009 15009.3181 13600.2805 3503.6982 8448.0055 157402942 trzN Organic Remediation Herbicides related compound Dehalococcoides sp. VS 4468.4990 6268.1365 8051.3449 18717.9710 13134.6496 9603.6604 39976535 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Magnaporthe grisea 70-15 4210.4236 111611621 nitA Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 6479.8471 4833.5351 3328.3386 157917577 linB Organic Remediation Pesticides related compound Salinispora arenicola CNS-205 6116.4530 8523.0666 20622.9712 24029.7838 9922.4717 12398.9953 8207.2945 12694.6938 10971.7651 152968712 CueO Metal Resistance Copper Klebsiella pneumoniae subsp. pneumoniae MGH 78578 6875.3556 5398.9824 12731.9988 7032.0746 15627.1043 59248.5146 73010.1606 47752.6515 7356.3218 7092.2643 9285.1576 119434075 nphA Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. JS443 4018.1020 35213900 xylF Organic Remediation Aromatics BTEX and related aromatics Gloeobacter violaceus PCC 7421 4538.9629 23343.2528 10647.5751 16283.3151 74038454 nirK Nitrogen Denitrification uncultured bacterium 6246.2128 72121736 linC Organic Remediation Pesticides related compound Ralstonia eutropha JMP134 4418.3053 4663.2134 10686.2316 150918 ureC Nitrogen Ammonification 4428.1587 4597.9067 7125.1277 8390.4346 16415.5382 19364.6680 4918.4295 5511.8181 7244.9905 126355305 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida GB-1 4381.5581 6077.0367 12182.3689 25622.1574 121997927 xylF Organic Remediation Aromatics BTEX and related aromatics Halorhodospira halophila SL1 4336.9406 4679.3934 18416.2919 152968136 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Kineococcus radiotolerans SRS30216 3850.7679 77378595 nirS Nitrogen Denitrification uncultured bacterium 4407.8404 39650352 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 4106.5468 6457937 amyA Carbon cycling Carbon degradataion Starch Deinococcus radiodurans R1 8054.1371 15966006 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 4884.3408 4292.6523 11549.7111 6479.7504 1595853 amyA Carbon cycling Carbon degradataion Starch Cryptococcus sp. S-2 4223.0219 2930.4837 110819060 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 4753.1620 124261240 pcpB Organic Remediation Herbicides related compound Methylibium petroleiphilum PM1 4107.5137 119817916 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 4801.7281 18309.4341 25360.5762 5211.4730 6182.7362 44939.8787 59555.3930 50147.7384 3550.7886 74381896 mnp Carbon cycling Carbon degradataion Lignin Pleurotus sapidus 5639.7178 113524907 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 16389.6472 27924.1321 25964.9815 55744.7212 86093.1553 77544.4082 59847.4758 54122.2373 76880.7576 192813.6534 71736439 xylA Carbon cycling Carbon degradataion Hemicellulose Pseudomonas syringae pv. phaseolicola 1448A 4657.8856 157960169 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 6494.1729 110162116 nahB Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CHY-1 4513.1240 3386.9671 4121.8254 76801449 nirK Nitrogen Denitrification Natronomonas pharaonis DSM 2160 5028.7158 10907.9649 8053.2294 16953.0360 43876.4367 57347.9887 46113.2407 7394.2399 6712.4029 9914.0562 61611849 benAB Organic Remediation Aromatics Aromatic carboxylic acid Delftia tsuruhatensis 6323.6146 5924.1818 6724.2531 14829.9214 31236.4714 9186.1540 16040.3905 17733.8787 11731.2856 9088.1199 119876377 czcD Metal Resistance Cadmium,Cobalt,Zinc Stenotrophomonas maltophilia R551-3 4536.5826 103487884 ArsC Metal Resistance Arsenic Sphingopyxis alaskensis RB2256 3502.6148 2981.7494 15601538 Arylest Organic Remediation Aromatics Other aromatics Vibrio cholerae O1 biovar eltor str. N16961 4458.4022 121554010 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 5585.6949 9702.3278 10848.4174 3448.5235 90413284 CadA Metal Resistance Cadmium Photobacterium profundum 3TCK 5188.3926 32034997 ZntA Metal Resistance Zinc Actinobacillus pleuropneumoniae serovar 1 str. 4074 4108.6297 13026.9918 23432.2359 58254.8907 39944.9120 9910.6558 25560.0206 39156.2540 12539415 catB Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. NK8 3687.4509 7894.0237 3752.0225 6120.7104 21719.7318 30944.2087 6093.5077 6628.6079 106889690 ara Carbon cycling Carbon degradataion Hemicellulose Roseiflexus sp. RS-1 3751.8239 29125972 nosZ Nitrogen Denitrification uncultured soil bacterium 4067.7715 6123.1402 16780.1004 47864.6159 26321.0988 115371541 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coprinopsis cinerea okayama7#130 4729.1407 23123941 ChrA Metal Resistance Chromium Nostoc punctiforme PCC 73102 3195.4048 32261.7365 13706.3500 9326.4369 48477.1642 34701.5543 9634.0735 8719.6336 50549899 ZntA Metal Resistance Zinc Yarrowia lipolytica 4773.4664 157919012 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinispora arenicola CNS-205 4801.8314 146405256 SilA Metal Resistance Silver Bradyrhizobium sp. BTAi1 4234.5167 4802.2879 11571.8853 10530.4229 17646.3148 40746932 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 3340.3755 10841.4944 4351.6545 45386183 narG Nitrogen Denitrification unidentified bacterium 3269.9828 4547.4344 84043023 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 4077.4581 15106.3505 43750.8333 11481.0073 35395.3044 22359.3474 33572392 tfdA Organic Remediation Aromatics Chlorinated aromatics Bordetella pertussis Tohama I 5137.6938 28734.2947 9512.6865 84387.7150 25289.9576 38806.4154 35552.4156 22074061 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni 4702.6626 4713.0783 66801927 narG Nitrogen Denitrification unidentified bacterium 5263.4363 121554384 tomA Organic Remediation Aromatics BTEX and related aromatics Verminephrobacter eiseniae EF01-2 4749.5413 5002.9071 18909.2604 17968.9688 17544.9155 24679.1732 20568.9953 7166.4123 18509.2267 158523522 dsrA Sulphur sulfite reductase uncultured bacterium 5800.9060 7092.9258 28629803 nirK Nitrogen Denitrification uncultured bacterium 3927.8542 83364899 pcc Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17029 3048.1708 84517008 PobA Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 6096.9366 26420.1037 119715861 trzN Organic Remediation Herbicides related compound Nocardioides sp. JS614 4540.1502 2272.9191 111225418 TerZ Metal Resistance Tellurium Frankia alni ACN14a 3506.4569 3157.7105 22978.9812 27410.5121 7602.4547 17698.2593 22940.3261 10190.1037 34558447 ZntA Metal Resistance Zinc Wolinella succinogenes DSM 1740 3957.4095 5795.3638 6028.3819 1592313 nifH Nitrogen Nitrogen fixation Methanocaldococcus jannaschii DSM 2661 3660.6582 12456.0349 32289.7784 18378.1195 38653.9499 146283178 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 6004.9760 152964759 adpB Organic Remediation Pesticides related compound Kineococcus radiotolerans SRS30216 3288.0567 119960877 pcaG Organic Remediation Aromatics Other aromatics Arthrobacter aurescens TC1 5113.2681 5088.7964 116255356 akbF Organic Remediation Aromatics BTEX and related aromatics Rhizobium leguminosarum bv. viciae 3841 4598.5079 6091.2065 22971.3769 34055.8118 40577.4571 119376647 ChrA Metal Resistance Chromium Paracoccus denitrificans PD1222 4024.0150 148254366 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 4765.4652 107015899 nitA Organic Remediation Aromatics Other aromatics Gibberella moniliformis 3690.1512 5002.7059 21038968 tfdA Organic Remediation Aromatics Chlorinated aromatics alpha proteobacterium HW13 4907.5052 5919.7451 5706.3189 150419220 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio cholerae RC385 4199.1958 5484.5877 9785.7702 4248.4586 111150230 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia alni ACN14a 3963.8973 3259.6933 17935100 ZntA Metal Resistance Zinc Agrobacterium tumefaciens str. C58 4435.9079 35214191 czcA Metal Resistance Cadmium,Cobalt,Zinc Gloeobacter violaceus PCC 7421 4344.1207 29607170 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 4537.5216 18034320 dsrB Sulphur sulfite reductase Syntrophobacter fumaroxidans 4113.5488 5096.8356 9268.2607 24073.5350 12739.6814 10305.7858 10552.1278 5872.4137 9143.0882 558805 mauAB Organic Remediation Herbicides related compound 4076.8649 6590.7373 3790.3221 6368.1456 19669.1728 7234.4912 3880.3786 46307850 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3945.2934 4054.0610 11391.5118 27641.7282 22577.3419 33429.6688 11604.4894 113733023 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter sp. K31 3896.9662 90856159 sox Sulphur Sulphur oxidation Allochromatium vinosum 4952.1365 94471203 narG Nitrogen Denitrification uncultured bacterium 4547.5962 82568129 gyrB other category Phylogenetic marker Thermoactinomyces vulgaris 5208.5662 108801912 linB Organic Remediation Pesticides related compound Mycobacterium sp. MCS 3754.6887 5295.9315 15801.8043 120577985 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Penicillium capsulatum 4333.3601 8873.6054 3051.3506 9174.3863 26395.8589 7783.7222 29966.1598 4021.4486 85823337 ChrA Metal Resistance Chromium Roseobacter sp. MED193 5137.3944 13742.8776 15692.4855 14635.8124 40723.0144 47982.7606 67693.8773 14790.5594 10071.6059 10767.2107 27354437 atzB Organic Remediation Herbicides related compound Bradyrhizobium japonicum USDA 110 4021.8282 157960153 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 4152.0728 46203198 pheA Organic Remediation Aromatics Other aromatics Magnetospirillum magnetotacticum MS-1 5842.3550 148572948 pcc Carbon cycling Carbon fixation Psychrobacter sp. PRwf-1 4218.0690 154252213 benAB Organic Remediation Aromatics Aromatic carboxylic acid Parvibaculum lavamentivorans DS-1 4358.9419 5914.1427 5883.1953 13400.3928 8596.8136 145217397 chnB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK 4127.5868 85860542 pnbA Organic Remediation Aromatics Nitoaromatics Syntrophus aciditrophicus SB 4008.4691 116694342 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 8855.8819 9882.8839 14975.0331 67158.6877 79068.5584 62316.6289 44425.1834 62555.3323 63785.7051 75165.1810 148551013 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 4398.8449 4527.8390 36465.3849 155425.6552 139754.6703 84224.1814 70370.9489 147598.6582 134853.0523 145282894 ArsA Metal Resistance Arsenic Pyrobaculum arsenaticum DSM 13514 4289.7104 6312.3695 47573738 rubisco Carbon cycling Carbon fixation Rubrivivax gelatinosus PM1 6647.4626 57117001 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis H37Rv 3763.4390 7302.9344 91200122 czcD Metal Resistance Cadmium,Cobalt,Zinc Candidatus Kuenenia stuttgartiensis 4206.8852 126707025 ChrA Metal Resistance Chromium Sagittula stellata E-37 3815.9387 90331998 Xamo Organic Remediation Other Hydrocarbons marine gamma proteobacterium HTCC2207 6404.5126 4060.9279 63258768 ZntA Metal Resistance Zinc Pseudomonas syringae pv. syringae B728a 4212.8461 114050077 arsB Metal Resistance Arsenic Streptomyces ambofaciens 3827.0710 116698348 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Syntrophobacter fumaroxidans MPOB 7287.4870 74422044 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter winogradskyi Nb-255 3811.4284 157364535 rubisco Carbon cycling Carbon fixation Thermotoga lettingae TMO 6670.2751 5452.1073 84222.8795 20151.9176 24284.0614 24527.3502 15533.8707 23934.4577 134096396 SilA Metal Resistance Silver Herminiimonas arsenicoxydans 4803.5785 83592229 TerZ Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 3455.8456 86574218 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris HaA2 5967.4870 8088.2224 13421694 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 6526.5478 118468905 hdnO Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium smegmatis str. MC2 155 4126.0280 6324.2963 9801.2647 25895.3933 56419238 amyA Carbon cycling Carbon degradataion Starch Geobacillus kaustophilus HTA426 7357.5625 11456.7451 23892.1666 24749.2784 18000.1136 53797.9368 17862.5020 23398.9392 19397.7373 9549.3939 19323.7057 88062471 dsrA Sulphur sulfite reductase uncultured Desulfobulbaceae bacterium 4656.9904 119955331 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 3469.9803 133776955 CopA Metal Resistance Copper Collinsella aerofaciens ATCC 25986 6479.8032 4469.9109 116700160 silC Metal Resistance Silver Syntrophobacter fumaroxidans MPOB 4078.2753 119535710 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 6080.8109 116700520 dsrA Sulphur sulfite reductase Syntrophobacter fumaroxidans MPOB 4704.8215 5630.6011 74317327 dsrA Sulphur sulfite reductase Thiobacillus denitrificans ATCC 25259 6702.1004 118424350 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5329.3630 7018.4241 51694.6497 96641.6592 74814.4088 89693.0810 115256305 silP Metal Resistance Silver Rhizobium leguminosarum bv. viciae 3841 6458.7684 42558534 CadA Metal Resistance Cadmium Acinetobacter sp. B0064 3992.6546 91783762 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 3452.2899 84499300 CopA Metal Resistance Copper Oceanicola batsensis HTCC2597 3835.1937 14374.3612 13131.7971 120595854 CopA Metal Resistance Copper Polaromonas naphthalenivorans CJ2 8462.1998 3822.2283 5760.6343 158110300 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec 3955.2384 10353.6050 20990.6207 3204.8270 8388.9654 55989.8104 46749.4451 64045.8569 5098.5405 133913193 PobA Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 3882.4958 115390791 pcpE Organic Remediation Herbicides related compound Aspergillus terreus NIH2624 4373.4226 85672433 nifH Nitrogen Nitrogen fixation Roseovarius sp. 217 3565.9471 19451.2837 6972.1325 10948.5321 5699.4648 33333869 nidA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. S65 3936.3524 78778519 ZntA Metal Resistance Zinc Prochlorococcus marinus str. MIT 9312 4401.9383 18529.2627 12246.3296 11692.3981 47503.0736 23385.5066 63023.0255 33579.7065 10967.5635 26726.6139 109290262 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3339.8261 5379.6379 67158162 bphA Organic Remediation Aromatics Polycyclic aromatics Azotobacter vinelandii AvOP 4123.6525 19515.5184 27401.0882 5653.1033 13505.1822 59878.7811 65756.0133 69475.3635 10458.0533 7851.5615 9279.2053 3157662 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 5921.8875 4007.1986 124257913 tutFDG Organic Remediation Aromatics BTEX and related aromatics sulfate-reducing bacterium TRM1 6050.8014 5378.0670 16755.9192 19625.2065 31841.6246 23761.8784 149130552 ChrA Metal Resistance Chromium Bacteroides caccae ATCC 43185 3081.2787 6648.7460 7718.4730 23208.0675 15640.9451 14018.2094 6840.4214 7075.5153 8277.3816 21111346 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas campestris pv. campestris str. ATCC 33913 6446.7110 150960101 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas aeruginosa PA7 4950.1826 4262.6121 12447.9544 13835.0904 116743200 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3956.4230 5807.5158 4980.3054 8585.0570 15591.1352 15779.2197 21569.3920 8562.6970 5591.1949 9622537 bbsG Organic Remediation Aromatics BTEX and related aromatics Thauera aromatica 3791.3908 4329.8148 3157544 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 4800.7011 5331.4641 12617.5866 18431.9486 28270519 ppk Phosphorus Phosphorus utilization Lactobacillus plantarum WCFS1 4233.6852 4163.0717 110822035 czcD Metal Resistance Cadmium,Cobalt,Zinc Rhodococcus sp. RHA1 4247.7625 91777976 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 4837.2218 117980556 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 3906.5696 6178.6797 6987.0702 7684.3493 14449.5377 19737.3595 21931.4026 6121.1272 10668.7838 127511439 nrfA Nitrogen Dissimilatory N reduction Shewanella loihica PV-4 4003.4554 4344.3513 12268.9728 5330.8004 85373461 amyA Carbon cycling Carbon degradataion Starch Erythrobacter litoralis HTCC2594 5761.7331 120606683 ChrA Metal Resistance Chromium Acidovorax sp. JS42 4671.2455 30742.7585 72601.2919 79427.1638 47722.8417 25564.6146 11217.4617 15759.1047 25025.7266 117997788 pbrA Metal Resistance Lead Chloroflexus aggregans DSM 9485 5232.5877 5831.3949 5520.4889 5688.0395 28971837 xylJ Organic Remediation Aromatics BTEX and related aromatics Sphingomonas sp. P2 4074.7325 38373203 nosZ Nitrogen Denitrification uncultured bacterium 4656.3300 8374.8386 8699.7015 116201105 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 4147.7435 22176.7310 145620593 CopA Metal Resistance Copper Geobacter bemidjiensis Bem 4334.4470 119539016 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 5418.5521 63081980 nosZ Nitrogen Denitrification unidentified bacterium 5318.8839 75701251 vanA Carbon cycling Carbon degradataion Others Anabaena variabilis ATCC 29413 3749.2470 116195332 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Chaetomium globosum CBS 148.51 6949.0174 4085.3897 17262.1351 5869.4304 126319890 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 6255.3018 90384.9805 46490.9440 42303.3841 13667.9237 28022.0393 124483586 czcD Metal Resistance Cadmium,Cobalt,Zinc Herbaspirillum seropedicae 3563.3508 8204.6293 42494406 cmuA Organic Remediation Chlorinated solvents uncultured bacterium 6714.0198 119775049 ArsC Metal Resistance Arsenic Shewanella amazonensis SB2B 7828.2837 152981908 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille 3534.1955 5991.0251 5015.0373 91688249 exaA Organic Remediation Chlorinated solvents Burkholderia xenovorans LB400 5599.6243 34075.0194 64513.1674 100425.9327 81564.5835 14444.9560 15248.7851 38226.9201 119373573 atzC Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 4808.0903 4419.7227 145257729 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus niger 10299.8917 64149.1637 73465.2386 94152.8653 67340.9263 61916.4173 62994.9198 87387.8729 89046.3243 70983488 nbaC Organic Remediation Aromatics Nitoaromatics Aspergillus fumigatus Af293 5016.4976 9452.2160 8332.2262 13530.7545 6081.9660 7668.5354 118747482 gyrB other category Phylogenetic marker Marinomonas sp. MWYL1 4848.4000 7433.8750 8800.4612 89319578 gyrB other category Phylogenetic marker Mycobacterium flavescens PYR-GCK 5512.8181 4119.5169 7645.8186 20812.0295 17780.1620 8573.9860 6814.0765 9940.4124 149377179 pcc Carbon cycling Carbon fixation Marinobacter algicola DG893 4108.6398 134103041 CopA Metal Resistance Copper Saccharopolyspora erythraea NRRL 2338 5628.2566 5063.7658 13728.1609 13251.5516 11469.8618 73660244 mer Metal Resistance Mercury Dehalococcoides sp. CBDB1 3742.0493 4520.5172 3781.8018 41058921 chnC Organic Remediation Other Hydrocarbons Brachymonas petroleovorans 5322.2484 111222973 bbsG Organic Remediation Aromatics BTEX and related aromatics Frankia alni ACN14a 6169.6207 134267082 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 5831.6092 7243.2176 6166.2416 17752.6084 10461.8772 9431.9983 8119.4735 13620786 akbF Organic Remediation Aromatics BTEX and related aromatics Streptomyces coelicolor A3(2) 4277.1616 142851198 silC Metal Resistance Silver Aeromonas salmonicida subsp. salmonicida A449 3796.8775 4457.1064 15357.9883 4454060 norB Nitrogen Denitrification Bradyrhizobium japonicum 4104.7597 111223775 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 5502.7611 10129.8895 116251962 nagG Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 4682.2644 5740.6164 85669083 dehH109 Organic Remediation Chlorinated solvents Roseovarius sp. 217 4365.7078 68164567 proO Organic Remediation Aromatics Other aromatics uncultured bacterium BAC17H8 4887.3902 5181.9902 5418.0112 8631.0898 18540.0881 15551.3308 14289.0942 157374665 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 8868.1440 126015215 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Staphylothermus marinus F1 4016.7586 4116.1382 85708273 czcD Metal Resistance Cadmium,Cobalt,Zinc Erythrobacter sp. NAP1 4545.4865 46562231 nifH Nitrogen Nitrogen fixation Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 4240.5276 111224482 alkK Organic Remediation Others Frankia alni ACN14a 7243.4826 46371007 nosZ Nitrogen Denitrification uncultured bacterium 5119.9249 89043253 xylanase Carbon cycling Carbon degradataion Hemicellulose Oceanicola granulosus HTCC2516 3821.7681 70672905 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4270.9343 13415.1158 31173.0387 34083.7724 23219.7063 58910.7074 37885.0621 17851.3885 40455.7992 116743229 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5565.0702 13074.2140 10170.2308 92118063 ppx Phosphorus Phosphorus utilization Nitrobacter hamburgensis X14 4089.3886 12866.0197 3984.0418 27377801 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 4190.5403 16126643 PobA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 3266.2440 4224.9207 110224974 gyrB other category Phylogenetic marker Streptococcus downei 3093.8569 5511.3446 6392.1132 120594321 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 3529.9531 94549708 linB Organic Remediation Pesticides related compound Acidobacteria bacterium Ellin345 5822.7918 27376012 amyA Carbon cycling Carbon degradataion Starch Bradyrhizobium japonicum USDA 110 6652.3430 117561083 pimF Organic Remediation Aromatics Aromatic carboxylic acid Aeromonas hydrophila subsp. hydrophila ATCC 7966 4396.4398 7187.2387 25537.1131 30448.2467 81661.6657 20205.5213 50978.2878 30053.7257 50536.4629 121606885 pbrA Metal Resistance Lead Polaromonas naphthalenivorans CJ2 5526.4389 118171874 caaD Organic Remediation Others Mycobacterium smegmatis str. MC2 155 3970.0547 7635.9776 13702.0863 35873.4619 56809.9945 17344.5622 37799.9234 43673.4765 20280.3951 46633.1115 85860285 CorC Metal Resistance Cobalt Syntrophus aciditrophicus SB 3064.5929 3900.5562 118435649 sox Sulphur Sulphur oxidation Stappia aggregata IAM 12614 5855.4791 7615.1248 11927.2433 10585.2457 12239.4294 29802.2600 51899.2970 45643.7195 11554.5590 5869.7366 72388587 gyrB other category Phylogenetic marker Psychrobacter immobilis 3880.3315 84503302 linC Organic Remediation Pesticides related compound Oceanicola batsensis HTCC2597 4981.7395 4070.6021 8529.2375 119957662 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 6146.2221 19484.1596 25752.1532 4056.7643 86357913 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium etli CFN 42 5522.4256 68479.2339 59384.8637 89205.0194 37783.1104 34928.1966 21698.9291 118424497 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5758.7718 5909.4132 11621.1001 26117.4465 13230.8333 9942.4566 16946.8730 10222.5209 8723.8616 8695.8874 114191853 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 4947.1713 8482.1594 76557515 ureC Nitrogen Ammonification Natronomonas pharaonis DSM 2160 3702.2203 117999213 pcc Carbon cycling Carbon fixation Comamonas testosteroni KF-1 4042.7962 4327.3670 70983017 linB Organic Remediation Pesticides related compound Aspergillus fumigatus Af293 3654.1935 146283057 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 10137.2669 3205.5921 1905759 isopullulanase Carbon cycling Carbon degradataion Starch Aspergillus niger 5103.8093 18220.6626 5770.3983 21452.9759 33736.6860 19951.2218 65446.3489 10054.4481 7342.7328 16304.1985 139003462 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4890.5712 13271.1318 89343583 CopA Metal Resistance Copper Rhodoferax ferrireducens DSM 15236 3324.0741 6009.6804 145570075 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas stutzeri A1501 4966.1078 84689354 ZitB Metal Resistance Zinc Parvularcula bermudensis HTCC2503 4235.3970 6460232 ChrA Metal Resistance Chromium Deinococcus radiodurans R1 4179.7432 2632.4704 9326.7185 5134.9598 119481917 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 5082.2295 7913.3471 45746.9856 23172.3016 16294.0517 21001.6854 14594.6028 8696.0463 20128.7300 124488205 napA Nitrogen Dissimilatory N reduction uncultured bacterium 3964.2441 8335.6152 11700.5932 47629.2247 27114.3131 27119.8934 50280.4051 10791.5721 13593.7529 15042.7578 145555045 tfdA Organic Remediation Aromatics Chlorinated aromatics Rhodobacter sphaeroides ATCC 17025 4346.2437 6584.8930 6967.4110 20717.9727 21783.9048 18158.9001 27605.2469 126952478 dsrB Sulphur sulfite reductase uncultured bacterium 4668.7783 99083095 nifH Nitrogen Nitrogen fixation uncultured bacterium 4694.9484 116670180 gyrB other category Phylogenetic marker Arthrobacter sp. FB24 4254.2829 3196.4114 4869.6888 16082372 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Thermoplasma acidophilum DSM 1728 5482.8697 6083.0992 15071.0214 7625.7550 83026006 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 3980.0651 18143416 endochitinase Carbon cycling Carbon degradataion Chitin Alteromonas sp. O-7 5378.0913 27051.5662 20840.9126 46803.8057 36238.1607 38224.3763 4335678 benAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas xenophaga 4765.0278 68510508 xylC Organic Remediation Aromatics BTEX and related aromatics Rhodococcus aetherivorans 4099.5873 121552055 atzC Organic Remediation Herbicides related compound Verminephrobacter eiseniae EF01-2 3964.6931 26657.2840 124522149 nagI Organic Remediation Aromatics Aromatic carboxylic acid Bacillus coagulans 36D1 9848.2459 13265.7893 32233.5998 78697507 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 7022.2227 117610431 czcD Metal Resistance Cadmium,Cobalt,Zinc Magnetococcus sp. MC-1 4328.1995 4046.8742 23014714 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magnetotacticum MS-1 4445.3354 118037653 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN 4342.2761 88864660 linB Organic Remediation Pesticides related compound Jannaschia sp. CCS1 4085.8826 25126.5576 8442.2918 2884.0127 4160.1057 16554.8788 34738.8611 29212.5608 8757.5100 6666.3264 91783171 nagK Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 3854.8537 5963.2508 126105519 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 4763.7122 66659.7894 37031.0441 44614.0817 17016.2604 51183.9199 52050.4101 118134805 Al Metal Resistance Aluminum Clostridium novyi NT 5154.4998 6635.7356 18886.8322 4581.6225 13033.4587 66434.9184 85948.2753 57550.3746 6751.0507 20119.5485 99083357 nifH Nitrogen Nitrogen fixation uncultured bacterium 3761.8470 3739.8503 90104425 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 3876.1116 110819363 benAB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 6908.3679 87281302 nirS Nitrogen Denitrification uncultured bacterium 4326.6898 157362170 exoglucanase Carbon cycling Carbon degradataion Cellulose Polyporus arcularius 3687.9904 62896434 merT Metal Resistance Mercury Pseudomonas fluorescens 3313.1914 83035003 nifH Nitrogen Nitrogen fixation Anabaena azotica FACHB-118 3643.8812 13924.9418 6202.5581 15365.6207 19169.2906 8395.6484 30262.1631 24818.3874 15021.4990 15425.7581 77954443 AmiE Organic Remediation Aromatics Other aromatics Marinobacter aquaeolei VT8 3292.4290 5761.3944 21824.3051 5842.2194 7600.9213 5876.0077 17431118 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum 4035.0168 8992.2132 12184.2555 28274.2090 12682.3764 8742.2629 8166.5059 89242496 endochitinase Carbon cycling Carbon degradataion Chitin Isaria farinosa 20066.8715 24136.0047 56337.1995 72713.6303 88191.4395 135395.7659 136789.2885 80176.7424 27286.5563 46065.1806 41521.2047 114327809 ppx Phosphorus Phosphorus utilization Granulibacter bethesdensis CGDNIH1 3789.8265 3685.4302 3228.7005 15141383 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 3621.4545 89143188 gyrB other category Phylogenetic marker Microbacterium keratanolyticum 3306.7548 3877.7424 117999992 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 3809.0100 88779006 xylanase Carbon cycling Carbon degradataion Hemicellulose Reinekea sp. MED297 6658.0052 151590843 catB Organic Remediation Aromatics BTEX and related aromatics Methylobacterium extorquens PA1 4517.7701 78498745 czcA Metal Resistance Cadmium,Cobalt,Zinc Thiomicrospira denitrificans ATCC 33889 4278.2380 3355.6054 5418.2634 110647724 atzA Organic Remediation Herbicides related compound Alcanivorax borkumensis SK2 4735.8937 37963677 CopA Metal Resistance Copper Sphingomonas paucimobilis 3768.8310 3829.7906 146188525 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4965.4991 11313.4389 83853673 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 3963.2636 9862.4847 110337507 ChrA Metal Resistance Chromium Acidovorax sp. JS42 3914.2352 33862.0558 73714.6232 58948.2476 33152.7299 16338.3963 12504.7924 16814.8631 23907.1504 145238310 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger 4027.4550 62424102 pheA Organic Remediation Aromatics Other aromatics Brevibacterium linens BL2 4107.2077 67284.3405 7617.4348 148255077 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 4982.2995 116619185 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 3722.8531 67917615 czcD Metal Resistance Cadmium,Cobalt,Zinc Chlorobium limicola DSM 245 6014.8359 3355.3480 119899262 exaA Organic Remediation Chlorinated solvents Azoarcus sp. BH72 10610.3311 17431383 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum 3453.3299 86571765 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 3654.3128 6966.3714 10938.0924 18346.3894 11773.4924 51303.2247 10910.1336 46881385 endochitinase Carbon cycling Carbon degradataion Chitin Listeria monocytogenes str. 4b F2365 4273.4372 10696.4158 29594.6352 9385.9618 17923.5484 48431.1489 69397.1139 69895.9059 23359.1893 17581.7709 28848.7257 66801859 narG Nitrogen Denitrification unidentified bacterium 4415.9130 5501.9490 114762066 CopA Metal Resistance Copper Roseovarius sp. HTCC2601 5952.5951 89353179 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 4620.9423 3042.4457 6119.2422 13461.1686 5068.0516 56710240 benAB Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 5435.0377 4746.1199 17539.7327 24535.3948 27171.6451 38947.6252 19961.7246 17064.6779 17750.0539 17311.0106 54302907 TehB Metal Resistance Tellurium Photobacterium profundum SS9 4994.4007 20502.3366 12743.4304 46102.6900 67209.8289 59756.9502 55655.8853 35351.5468 21055.0162 35363.0309 148251653 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 5602.1509 3514.8146 6410.7293 119466284 CopA Metal Resistance Copper Nodularia spumigena CCY9414 5821.9239 6058.8116 121555348 ChrA Metal Resistance Chromium Verminephrobacter eiseniae EF01-2 4371.3497 10274.0862 47676.1989 128682.3120 100399.3957 56127.3827 75977.3951 123350.6857 93651.8044 158392731 exaA Organic Remediation Chlorinated solvents Pseudomonas putida 3704.7673 4377.1570 5489.2982 56553358 gyrB other category Phylogenetic marker Alteromonas macleodii 5188.8724 84704987 mer Metal Resistance Mercury Parvularcula bermudensis HTCC2503 3583.3217 53723283 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia pseudomallei K96243 4781.9883 6118.3992 5045.3692 89344921 rubisco Carbon cycling Carbon fixation Rhodoferax ferrireducens DSM 15236 4955.3886 85669952 ureC Nitrogen Ammonification Roseovarius sp. 217 5134.7581 5296.9173 5635.8792 83361863 CopA Metal Resistance Copper Rhodobacter sphaeroides ATCC 17025 3645.5489 121605776 silC Metal Resistance Silver Polaromonas naphthalenivorans CJ2 4042.5140 6286.9490 10749.6753 13325.3388 12420.3442 10743.9158 7390.4581 110823833 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 3097.6192 6684.3387 4610.5654 14615.5190 67373.7547 77411.8006 60287.8530 9095.4360 20130.4378 89512870 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5645.5409 9136.5583 30926.3214 90954.7879 33139.8550 19587.1490 10666.3764 37668.2160 150388312 catB Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus metalliredigens QYMF 6912.6976 7352.1257 17566.8700 13405.9416 94470931 nifH Nitrogen Nitrogen fixation uncultured bacterium 4076.7889 3131.7903 115367113 pchCF Organic Remediation Aromatics BTEX and related aromatics Stigmatella aurantiaca DW4/3-1 3592.9672 10741.6148 5869.3777 11779.6692 25657.0494 21941.6139 35702.1646 7697.0142 118743723 hydrogenase Energy process Energy process Geobacter lovleyi SZ 4035.3958 29835.7746 15290.9829 11454.7726 84693457 ureC Nitrogen Ammonification Polaromonas naphthalenivorans CJ2 4197.9742 56476744 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 6951.0662 56130749 xylF Organic Remediation Aromatics BTEX and related aromatics Ralstonia metallidurans CH34 3800.1677 4691.8274 119958175 tftH Organic Remediation Aromatics Chlorinated aromatics Mycobacterium vanbaalenii PYR-1 4108.5283 5759.5253 16351.6990 8001.9097 7527.2485 22368.9516 24918.8917 28580.4815 8284.0784 6824.6412 78494567 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 5547.3280 4095.3313 8564.0437 4660.8532 118705598 bphC Organic Remediation Aromatics Polycyclic aromatics Sphingomonas wittichii RW1 4613.3403 6108.9431 6771.5750 148273127 nmoA Organic Remediation Aromatics Nitoaromatics Clavibacter michiganensis subsp. michiganensis NCPPB 382 3652.6510 4405.2248 2935031 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus 4173.5544 4350.1746 3968.3815 7242.6317 16264706 Catechol Organic Remediation Aromatics Other aromatics Sinorhizobium meliloti 1021 12863.1714 89274952 bphD Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. R04 3650.7346 119670679 proO Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 3374.8861 3226.1973 108800911 CopA Metal Resistance Copper Mycobacterium sp. MCS 4995.1840 126727408 sox Sulphur Sulphur oxidation Rhodobacterales bacterium HTCC2150 4678.7659 16052.5752 17123.9760 13733.5920 21789.8334 138754346 mcrA Carbon cycling Methane Methane production uncultured archaeon 3336.8380 6233.2923 22038.7711 35736.1237 25303.0854 111282984 ureC Nitrogen Ammonification Acidovorax avenae subsp. citrulli AAC00-1 4349.3957 41398598 adpB Organic Remediation Pesticides related compound Mycobacterium avium subsp. paratuberculosis K-10 4029.9436 157285706 napA Nitrogen Dissimilatory N reduction uncultured bacterium 4079.9538 107027283 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia AU 1054 4362.5046 5398.3330 34860.8078 26776.8096 7281.1480 144905819 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5725.3247 32442.9280 94265724 nrfA Nitrogen Dissimilatory N reduction delta proteobacterium MLMS-1 3905.6684 28556705 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 4088.7496 78221327 cytochrome Energy process Energy process Geobacter metallireducens GS-15 3790.4655 5754.9626 10670.9538 3970.7858 6811.8414 90335930 mer Metal Resistance Mercury Aurantimonas sp. SI85-9A1 4137.3436 7690.0110 9767.9077 12272.9890 118731626 CopA Metal Resistance Copper Delftia acidovorans SPH-1 4537.9360 118504015 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 5050.4328 5565.1544 13249523 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3990.6993 8193.2743 4727.0785 8105.8921 39486.8397 54348.1243 19552.7551 9183.9616 8315.1432 133753301 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 4141.6971 3709.8328 117619683 tfdA Organic Remediation Aromatics Chlorinated aromatics Aeromonas hydrophila subsp. hydrophila ATCC 7966 4414.5906 3029.5666 10153.9913 25447.9093 27775.6751 10466.8418 6308.7130 8463.0698 10594.7123 151246 dehH109 Organic Remediation Chlorinated solvents 7340.4496 68007406 CopA Metal Resistance Copper Exiguobacterium sibiricum 255-15 5913.4107 78693599 atzA Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 6100.0647 6462.1680 71368294 CODH Carbon cycling Carbon fixation Nocardioides sp. JS614 4718.4561 34335348 nahF Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. ND6 3621.0658 4305.6945 148263597 CopA Metal Resistance Copper Geobacter uraniumreducens Rf4 3351.9018 73748117 TerC Metal Resistance Tellurium Dehalococcoides sp. CBDB1 3661.9837 134265838 narG Nitrogen Denitrification Geobacillus thermodenitrificans NG80-2 4062.4967 4050.6087 84502849 PobA Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 3966.9462 12814.4831 108802987 CopA Metal Resistance Copper Rubrobacter xylanophilus DSM 9941 4451.4414 99037017 nagG Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 3569.5100 148724095 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured soil bacterium 5438.9346 82702867 czcD Metal Resistance Cadmium,Cobalt,Zinc Nitrosospira multiformis ATCC 25196 4021.2239 4339.8461 56697625 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 4353.8007 17807.9973 12074.4394 10482.7453 7233.8240 14991.0156 77920456 nrfA Nitrogen Dissimilatory N reduction Pelobacter carbinolicus DSM 2380 3243.5527 139003456 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 10419.0185 17788.1517 28913.8734 29252.1371 24958.0196 86874.9822 65984.1347 79462.2741 16484.0943 15177.9291 23924.4094 67543152 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 5483.6276 84388832 PobA Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 4662.7254 6097.5296 9751.3321 7219.0489 5129.4028 6205.7442 119456976 TerZ Metal Resistance Tellurium Lyngbya sp. PCC 8106 3886.0214 115399028 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 4927.7481 13679.4627 15840.9309 16103.8786 29202.6062 27799.0525 10295.6753 13409.3869 72118456 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 3744.8070 3317.7762 62184245 exoglucanase Carbon cycling Carbon degradataion Cellulose Verticillium dahliae 3769.5491 19915193 ZntA Metal Resistance Zinc Methanosarcina acetivorans C2A 4978.3022 154687729 ChrA Metal Resistance Chromium Bacillus amyloliquefaciens FZB42 5300.1609 12833.0666 14083.1568 5694.3683 2264396 phenol_oxidase Carbon cycling Carbon degradataion Lignin basidiomycete CECT 20197 17714.7869 4747.3193 118677392 nitro Organic Remediation Others Enterobacter sp. 638 4145.1458 7426.8412 5018.1817 10573.3868 37223.4802 15764.0998 3779.5238 157314387 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermotoga lettingae TMO 4793.6305 5336.8065 121611522 Catechol Organic Remediation Aromatics Other aromatics Verminephrobacter eiseniae EF01-2 6093.7015 4211.9394 7208.5460 62468070 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 4986.2847 78191633 endochitinase Carbon cycling Carbon degradataion Chitin Lecanicillium lecanii 4449.0714 13961.2787 19734.7973 18949.3898 19888.0347 64535.9579 59196.4188 80706.6779 6735.3839 9106.6195 10347.9584 113888806 czcD Metal Resistance Cadmium,Cobalt,Zinc Shewanella sp. MR-7 4785.4447 95113129 CadA Metal Resistance Cadmium Pseudomonas 4781.4245 13628.6935 15024.1376 20445.7227 53530.5326 37431.8660 42053.2904 18553.1718 7764.3959 11623.1176 114705878 ArsC Metal Resistance Arsenic Fulvimarina pelagi HTCC2506 4255.7597 6972.3868 64615.1465 138705.5577 125008.5315 70969.7546 98285.0257 154335.6317 119040.1540 76802550 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 3777.9194 6121.0170 7519.8922 6922.3168 9618.1758 94311453 ChrA Metal Resistance Chromium Ralstonia metallidurans CH34 3633.1962 4416.2489 6779.6218 146410979 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 5841.3046 154489166 pulA Carbon cycling Carbon degradataion Starch Bifidobacterium adolescentis L2-32 6233.3602 5640.3537 146403580 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 3926.2344 11779.9698 2944.6751 5472.5675 52114.6157 37223.9838 44512.2066 5356.6678 126732364 phn Organic Remediation Herbicides related compound Sagittula stellata E-37 4680.6372 158523516 dsrA Sulphur sulfite reductase uncultured bacterium 4926.3568 17888.4317 20958.0091 36819.2581 40077.4481 45704.8268 89092596 nreB Metal Resistance Nickel Oceanospirillum sp. MED92 3637.3699 4300.5369 6558.5343 35067.1739 13209.4971 8662.3049 12682.9988 148628322 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 3967.6128 70734256 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas fluorescens Pf-5 4288.9917 111225032 pcc Carbon cycling Carbon fixation Frankia alni ACN14a 6655.6998 5118.9340 116255227 atzA Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 4138.1332 29160305 exoglucanase Carbon cycling Carbon degradataion Cellulose Chaetomium thermophilum 3756.1209 9440.7548 68025.2365 40935.4829 18161012 mer Metal Resistance Mercury Pyrobaculum aerophilum str. IM2 45594.7685 8767.8037 28143.9879 116612750 CopA Metal Resistance Copper Arthrobacter sp. FB24 3976.6259 10386.2849 16295.3101 20601.1957 20116.0389 15226.6076 6974.0908 6461.3375 84694060 Apc Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 4264.0608 2979.2377 58616379 TerZ Metal Resistance Tellurium Azoarcus sp. EbN1 6477.0690 121701495 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus clavatus NRRL 1 9866.8374 11409.5693 71270.3144 69531.3538 86178.7912 106207.8655 72909.2991 31526.5527 34406.2819 40673.9032 13249525 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3407.6125 56798497 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 6273.6705 5148.9356 23319.4479 26712.0065 8049.1437 117992518 czcA Metal Resistance Cadmium,Cobalt,Zinc Burkholderia phytofirmans PsJN 6732.8699 3296.7339 14026595 rubisco Carbon cycling Carbon fixation Mesorhizobium loti MAFF303099 4720.5960 11119.5788 37300.3426 11559.4111 16763.9688 54016.8124 66273.1779 81778.2794 13444.9776 8393.9149 13498.5266 91692846 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 3833.1275 4943.3543 27382955 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 6396.9546 10241.4235 87153.3295 152031.0323 129135.1892 75950.6923 123871.6248 175469.3654 118376.5354 92112457 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 5078.6377 6531.7416 10793.1073 4871.8971 7703.8151 82791413 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 3469.8702 111222897 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 4966.1610 6348.0795 12020.6252 8058.5813 8153.1377 149173614 pcaG Organic Remediation Aromatics Other aromatics Planctomyces maris DSM 8797 3931.0792 108765622 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 13371.2245 30142112 dsrB Sulphur sulfite reductase uncultured bacterium 7349.4447 13889.6141 14982.4360 84714081 Apc Organic Remediation Aromatics BTEX and related aromatics Polaromonas naphthalenivorans CJ2 3633.3580 6740.5054 4623.4908 20014.2430 14892.3139 32017.8026 157375286 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 17761.2234 17072.1603 28938.6417 3549.0568 3990.8513 7301.6150 115365025 PobA Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 4398.6110 10838.0965 5902.2130 8038.8703 166516 pectinase Carbon cycling Carbon degradataion Pectin 4342.4963 4891.5446 108765029 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 3548.0071 152992097 sox Sulphur Sulphur oxidation Sulfurovum sp. NBC37-1 5670.7446 85777065 amyA Carbon cycling Carbon degradataion Starch Anaeromyxobacter dehalogenans 2CP-C 3762.8522 13249537 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4013.9761 71907059 ureC Nitrogen Ammonification Dechloromonas aromatica RCB 5005.5157 83815437 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Salinibacter ruber DSM 13855 7420.4910 6378.9702 3959.1979 33391483 nosZ Nitrogen Denitrification uncultured bacterium 5089.0270 5331.1797 127513499 pcc Carbon cycling Carbon fixation Shewanella loihica PV-4 6743.0274 3608.5032 157371599 czcA Metal Resistance Cadmium,Cobalt,Zinc Serratia proteamaculans 568 4082.0181 5989.8612 60083.4174 36840.2312 61235.5731 76057545 nosZ Nitrogen Denitrification uncultured bacterium 4648.3675 3922.1211 109452506 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5908.3741 48927357 silC Metal Resistance Silver Stenotrophomonas maltophilia 3946.4194 25990802 dsrA Sulphur sulfite reductase uncultured bacterium 3874.2069 5750.9059 45944.7376 5586.3759 34844.2975 84966.1294 51713.1686 113871168 ZntA Metal Resistance Zinc Sinorhizobium medicae WSM419 5119.6696 6703.8035 124258309 exaA Organic Remediation Chlorinated solvents Methylibium petroleiphilum PM1 4291.8229 121609529 PobA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 7551.8650 119864244 czcD Metal Resistance Cadmium,Cobalt,Zinc Psychromonas ingrahamii 37 4460.5579 10434.1859 5268.2817 9262.0868 32624.6915 11419.7386 22698.6442 134142929 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 4726.8935 4712.7715 4498.0810 152970669 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 3396.5771 17385540 narG Nitrogen Denitrification uncultured bacterium 4362.8867 5256.8803 15319.4677 12617.6322 14069.8179 50807.7019 10680.4881 15797.8246 88787339 nitA Organic Remediation Aromatics Other aromatics Synechococcus sp. WH 7805 5896.3010 3494.2463 124267712 ChrA Metal Resistance Chromium Methylibium petroleiphilum PM1 3556.4762 3659.2037 10440.3538 4775.4130 7622.1195 26416.0099 25993.3753 78697312 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 4606.5468 3591.6143 7539.4279 22203362 dsrA Sulphur sulfite reductase uncultured bacterium 3772.3295 111224515 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 3749.8904 7506.7308 19529.2225 14476.1459 94152547 czcA Metal Resistance Cadmium,Cobalt,Zinc Ralstonia metallidurans CH34 3911.2121 27106.5424 14067.2067 35947.8240 30219.8665 16514.4219 52421.6154 32620.8884 7857.1453 14368.7882 90202496 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 6895.9580 5179.4511 147830109 pcc Carbon cycling Carbon fixation Clavibacter michiganensis subsp. michiganensis NCPPB 382 5913.2296 8327.4002 32959.1342 10832.0736 24491.3869 139002666 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5693.9013 10507.8663 35577.1793 23644.1562 55188.0073 95877.6922 65209.2944 8605.4088 30629.8530 23459.8032 88062453 dsrA Sulphur sulfite reductase uncultured bacterium 4726.9816 67774945 gyrB other category Phylogenetic marker Chlorobium phaeobacteroides DSM 266 4049.5547 3541.3466 7433.5747 5128.3250 5427.3602 119505745 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 4204.1637 3941.2154 5855.7023 5358.7741 3609.1174 7611.1865 5995.9828 50952849 lip Carbon cycling Carbon degradataion Lignin Trametes versicolor 3643.4831 118473353 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Mycobacterium smegmatis str. MC2 155 4333.7149 12720932 TehB Metal Resistance Tellurium Pasteurella multocida subsp. multocida str. Pm70 4925.3370 29481.9009 58414.9981 88656.0502 64817.1860 78983.1113 78663.3496 36300.7527 50490.6928 2251108 amyA Carbon cycling Carbon degradataion Starch Pyrococcus sp. 3669.6244 9821.0909 7529.5318 86358023 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 7137.4039 5680.6745 5685.5849 5856.3719 115397631 phenol_oxidase Carbon cycling Carbon degradataion Lignin Aspergillus terreus NIH2624 5223.7514 12879.1132 14099.0657 10089.4282 9006.4798 66187.5352 39465.5775 63428.1949 5798.6137 7032.3419 21322693 mer Metal Resistance Mercury Sphingomonas sp. Spi7 3601.9450 7119.3565 113731798 limEH Carbon cycling Carbon degradataion Others Caulobacter sp. K31 6591.0227 3324.3988 125972954 endoglucanase Carbon cycling Carbon degradataion Cellulose Clostridium thermocellum ATCC 27405 5206.1865 4396.9306 72394883 nifH Nitrogen Nitrogen fixation Methanosarcina barkeri str. fusaro 4127.0262 91795547 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 5667.1659 5360.3523 21134.4286 25922.8496 17089.4107 10455.2969 17073.8597 54018931 TehB Metal Resistance Tellurium Nocardia farcinica IFM 10152 4413.8634 12030.9840 11853.7668 157837421 PobA Organic Remediation Aromatics Aromatic carboxylic acid Chromohalobacter sp. HS2 3714.6510 8754.9606 118759579 CDD Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 4388.5393 118424458 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4980.8183 8119.8283 22249.1206 12987.1765 14029.1853 10924.7063 18616.2269 7833.4171 32364166 gyrB other category Phylogenetic marker Lonepinella koalarum 6795.3585 9106794 linC Organic Remediation Pesticides related compound Xylella fastidiosa 9a5c 4606.6602 42558544 ZntA Metal Resistance Zinc Pseudomonas sp. B0310 4906.8609 2547.3846 134097246 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 6119.7128 7538.0921 14422.2013 28620.7407 33560.3941 70310.9120 53422.6205 45330.9132 24997.1951 15355.1177 114763537 ureC Nitrogen Ammonification Roseovarius sp. HTCC2601 4635.0740 8778.4019 12410.3153 14863.9230 26308.1852 20802.6849 34905.1741 37510.6304 9124.3857 16741.3031 9952.1637 44662915 TerD Metal Resistance Tellurium symbiont bacterium of Paederus fuscipes 7476.8520 146409656 CusA Metal Resistance Copper Bradyrhizobium sp. BTAi1 3821.8247 133738727 czcC Metal Resistance Cadmium,Cobalt,Zinc Herminiimonas arsenicoxydans 4202.8234 82940331 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3965.5907 116700521 dsrB Sulphur sulfite reductase Syntrophobacter fumaroxidans MPOB 3909.7300 8026.2025 7541.0150 15435.6842 10031.4950 6859.9578 6478.5229 88814399 xylA Carbon cycling Carbon degradataion Hemicellulose marine actinobacterium PHSC20C1 4538.4036 6935.3946 9897.3884 9173.5045 4183.1194 78367424 ChrA Metal Resistance Chromium Shewanella sp. PV-4 4183.5193 6458244 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Deinococcus radiodurans R1 3294.3297 86196934 amyA Carbon cycling Carbon degradataion Starch Magnaporthe grisea 70-15 4184.0015 4486.4639 67540332 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 5127.1297 5816.7459 14538.1115 13329.2877 18864.7549 25990186 endoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus aculeatus 25800.9024 27288.1096 76578.1398 62822.7265 54476.8613 88802897 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Polaribacter irgensii 23-P 4400.4975 22433.1065 3866.9146 10370.9867 34897.7029 16028.4834 44248.3829 13327.5734 25332.2652 19554164 CadA Metal Resistance Cadmium Corynebacterium glutamicum ATCC 13032 9453.8186 16650.9745 9750.7503 8693.1359 45936.6731 61708.1711 49549.6296 3963.0743 81251106 gyrB other category Phylogenetic marker Nitrosomonas sp. OZK11 11176.2862 8233.8273 23866.2147 20740.2992 16178.6684 90332326 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 3546.0695 6986.9303 39649685 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 8205.6785 4772.1854 10353.0966 33604.2270 18366.8133 29915.2292 4095.3031 6030.1566 10694.5855 117998696 pcc Carbon cycling Carbon fixation Comamonas testosteroni KF-1 5996.1392 5810.2463 7221.5458 37699.8522 18045.2716 41156.1534 117647704 nitA Organic Remediation Aromatics Other aromatics Acidothermus cellulolyticus 11B 4066.2087 12126.4498 10854.5400 9529.7123 134099293 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 5388.8818 5827.1959 20066.8244 24155.9439 34695.5629 77378419 nirS Nitrogen Denitrification uncultured bacterium 12485.8053 4138.2824 7358.3048 21152.8609 43194.6467 56479167 ppk Phosphorus Phosphorus utilization Azoarcus sp. EbN1 6100.4754 3513.1668 6717.5234 20948.1085 10688.5608 29994.1990 5391.5383 125487489 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces sp. C203 7933.5033 22378.5776 4742.2301 34342.8973 28483.6570 34676.5935 3103.2016 73660979 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 6418.8754 14295.7172 6612.5622 14110.3168 37447.0984 22909.5531 14096.6632 6907.7663 5654.4421 116750031 nifH Nitrogen Nitrogen fixation Syntrophobacter fumaroxidans MPOB 5996.8294 3208.7807 11169.9753 31486.9420 49517.7575 68264609 alkB Organic Remediation Other Hydrocarbons Corynebacterium jeikeium K411 10894.1220 5948.2357 5972.6021 23304.1160 66574689 ara Carbon cycling Carbon degradataion Hemicellulose Xanthomonas campestris pv. campestris str. 8004 5149.2882 30350.5388 78221546 cytochrome Energy process Energy process Geobacter metallireducens GS-15 6886.9357 3089.1323 6922.8193 22436.0478 9659.6275 22422.1192 150375801 ChrA Metal Resistance Chromium Sinorhizobium medicae WSM419 4664.8775 23129905 cadBD Metal Resistance Cadmium Nostoc punctiforme PCC 73102 4063.9285 117156239 amoA Nitrogen Nitrification uncultured crenarchaeote 6822.6771 3660.5362 9864.9558 40125.4394 12517.4436 30341.7745 8280.9201 4586283 phdJ Organic Remediation Aromatics Polycyclic aromatics Alcaligenes faecalis 16498.1193 14602.1279 15401.8297 37969.3168 4665.9967 78172075 sox Sulphur Sulphur oxidation Chlorobium chlorochromatii CaD3 5291.4206 6453.6241 5181.7016 7318.7914 63256320 pheA Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. syringae B728a 4617.6577 11793.1424 6363.5396 27379744 ZntA Metal Resistance Zinc Bradyrhizobium japonicum USDA 110 2804.9212 3923.1718 15256.2622 4431.2715 149279372 catB Organic Remediation Aromatics BTEX and related aromatics Pedobacter sp. BAL39 15370.3294 4969.3396 23028.0329 68115.4765 115520555 cellobiase Carbon cycling Carbon degradataion Cellulose Rhodopseudomonas palustris BisA53 9643.2522 3419.3513 17048.9557 32189.1311 38838.7961 118470813 scnABC Organic Remediation Others Mycobacterium smegmatis str. MC2 155 5283.2841 7048.0048 4064.0846 5113.2194 25229.6710 14896.8652 6436.1177 144900614 ArsC Metal Resistance Arsenic Magnetospirillum gryphiswaldense MSR-1 9800.1020 8975.5583 57110.1684 85093.5258 68635.4672 30307.8060 30269553 nasA Nitrogen Assimilatory N reduction uncultured bacterium 4931.7990 48708.1884 43682.8003 6688.6329 150376214 Catechol Organic Remediation Aromatics Other aromatics Sinorhizobium medicae WSM419 5877.8618 2484.4947 6011.7042 46232.5491 33499.6095 18860818 alkB Organic Remediation Other Hydrocarbons Pseudomonas fluorescens 3444.2117 12935.4962 151352 mdlA Organic Remediation Aromatics Aromatic carboxylic acid 15606.6892 6398.6692 43440.8233 31267.6793 83813.2357 52783.1171 17822.6764 13098.9709 25619.1396 95108412 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 4301.8153 71282719 ppx Phosphorus Phosphorus utilization Prosthecochloris vibrioformis DSM 265 5714.8725 4080.4610 15166.5880 18034329 dsrB Sulphur sulfite reductase Desulforhopalus singaporensis 5953.4635 4657.7369 5216.1942 17876.4614 74056902 nosZ Nitrogen Denitrification Thiobacillus denitrificans ATCC 25259 6042.2586 4271.8683 6079.0222 48511.7066 23139.0149 29547.7969 6075.1744 14193.5942 70992241 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 4659.0372 10005.2280 12009.9435 24862.1255 110678825 sox Sulphur Sulphur oxidation Roseobacter denitrificans OCh 114 15711.7449 13873.8110 30716.4632 41893.4046 28077.1117 156191723 ureC Nitrogen Ammonification Methylobacterium chloromethanicum CM4 2670.5371 3314.3114 8864.8751 9825.6560 24892.9289 6472.1070 38638 nifH Nitrogen Nitrogen fixation Nostoc sp. PCC 7120 12799.4821 18051.0269 8974.1720 16671.2451 41606.8648 20800.8687 28935.5987 14059.4359 28628931 nifH Nitrogen Nitrogen fixation Methylomonas rubra 4505.4775 152984294 cellobiase Carbon cycling Carbon degradataion Cellulose Pseudomonas aeruginosa PA7 5778.9765 22613.4309 9708.3628 35545.5733 4830.1476 50120805 nrfA Nitrogen Dissimilatory N reduction Erwinia carotovora subsp. atroseptica SCRI1043 5295.4530 13834.4789 4423.2645 7776.6324 14843.6906 18208.2385 9197.2091 110646498 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax borkumensis SK2 12554.1934 11153.1455 11286.3513 17708.1513 24653.9638 26201.3592 36533.4763 12165.2553 15890442 PobA Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 4744.0329 35972.8924 27945.9656 28192638 dsrA Sulphur sulfite reductase Desulfonauticus submarinus 12013.2879 11843.0982 24039.3584 92918950 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin proteobacterium AI21 4679.9548 115387787 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 6888.4035 83747378 chnB Organic Remediation Other Hydrocarbons Ralstonia solanacearum UW551 6166.4605 11820.3052 4331.1818 77019732 ArsA Metal Resistance Arsenic Rhodococcus erythropolis PR4 3848.1912 26355.4381 6174.4616 20977654 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5944.5265 9663.4911 144905828 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11262.0094 18411.7052 33887.7268 20082.3418 149825639 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Limnobacter sp. MED105 7681.1083 24466.0058 6985.3677 49311.9913 72078.6301 34675.9140 13357637 gyrB other category Phylogenetic marker Ureaplasma parvum serovar 3 str. ATCC 700970 3002.2996 8102.7018 11405.4573 146283160 ArsC Metal Resistance Arsenic Pseudomonas stutzeri A1501 8400.5822 9533.0822 41976.7217 11283.8802 23306.1346 153808537 pulA Carbon cycling Carbon degradataion Starch Bacteroides caccae ATCC 43185 5228.3768 56567522 endochitinase Carbon cycling Carbon degradataion Chitin Torrubiella confragosa 13918.4845 18652.6131 15966.5681 78221395 cytochrome Energy process Energy process Geobacter metallireducens GS-15 4309.3371 8237.4893 119958451 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 8038.6580 6306.7041 5124.0610 35916.2196 42874.4900 144753 endoglucanase Carbon cycling Carbon degradataion Cellulose 6841.8132 34801.9855 8254.7887 26947.8559 81979.0780 85733.9374 6717.5441 145213691 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK 12411.4251 54312.6387 8568.1144 12175.6579 76775.0819 66791.5165 13819.7839 116098698 ppx Phosphorus Phosphorus utilization Lactobacillus brevis ATCC 367 6684.2974 4742.9526 4907.2594 19017.4841 6345.2097 119399582 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 4186.3264 9994.9310 26714.7033 19444.9247 8511.8125 120611198 silC Metal Resistance Silver Acidovorax avenae subsp. citrulli AAC00-1 4491.1384 5106.3002 4744.1668 7168.9906 6889.3760 91698903 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 5933.9259 6425.5992 29588.9668 36569.6505 33478.4887 6898.6103 61658242 glucoamylase Carbon cycling Carbon degradataion Starch Thermomyces lanuginosus 21290.0907 39539.9682 16409.6741 34014.2289 80413.8590 63393.5272 76577.5224 7773.2461 9463.2764 84372347 atzA Organic Remediation Herbicides related compound Methanosphaera stadtmanae DSM 3091 4966.8515 77973060 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Yersinia frederiksenii ATCC 33641 10857.3624 19921.7816 7292.1107 8067.8889 43679.8142 41014.1997 78917.0278 9904.2541 6591.2807 15778.5383 28899777 ppx Phosphorus Phosphorus utilization Vibrio parahaemolyticus RIMD 2210633 9173.3360 3157.3562 7141.6322 18828.5347 27124.1047 28815.0282 7756.3918 50122087 ppx Phosphorus Phosphorus utilization Erwinia carotovora subsp. atroseptica SCRI1043 8506.6583 15628.6118 5774.2904 12044.0371 32441.7770 21035.4872 51049.5966 5750.6973 28810000 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio parahaemolyticus RIMD 2210633 53615.6374 86513.8361 10474.4493 13368.3652 76248.7031 65324.6489 70539.6340 8126.5705 8914.9876 13626.8356 117986956 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 5814.3857 12972.4208 14013.6853 48754.9074 110612713 gyrB other category Phylogenetic marker uncultured bacterium 4860.5812 12263.1671 3961.0925 21212.4517 19773.7642 6324.6291 18958203 ppk Phosphorus Phosphorus utilization Haloferax volcanii 5318.4274 3454.6815 11957.0378 15683.3734 51459.2780 27800.9231 108769877 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium sp. MCS 9085.5539 34686.3114 20464.5188 43560.7889 6179889 exoglucanase Carbon cycling Carbon degradataion Cellulose Alternaria alternata 9776.2494 3283.3220 78314.9174 43366.7838 10039315 gyrB other category Phylogenetic marker Flexibacter elegans 6549.5292 8519.7920 4535.5998 7960.1181 20611.2731 44287.6114 157373485 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 6662.7158 2309.3847 7982.1595 37485.2810 113927073 aclB Carbon cycling Carbon fixation Persephonella sp. EPR351 6947.9713 19829.4594 6366.4773 10014.6659 75566.5028 79796.3539 75926.9556 15621.6130 16988.2367 50880306 glx Carbon cycling Carbon degradataion Lignin Botryotinia fuckeliana 7091.8739 17472.5084 3704.2691 38011.0828 35696.3973 87135588 amyA Carbon cycling Carbon degradataion Starch Novosphingobium aromaticivorans DSM 12444 6979.1378 156523572 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 5503.8790 139003691 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4888.5955 41871.9240 22221.8777 33908.3171 48763.7281 41319.2939 15164.9535 48517.8827 58560.3883 94313955 czcA Metal Resistance Cadmium,Cobalt,Zinc Ralstonia metallidurans CH34 6944.7833 6618.8953 20631.0178 12493.2809 17536.6492 119898739 PobA Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 8790.6216 28115.8577 30314.9809 42529.9739 29930.6662 134052051 pimF Organic Remediation Aromatics Aromatic carboxylic acid Desulfotomaculum reducens MI-1 3450.9899 83749274 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum UW551 3405.3422 3893.0844 63257864 exaA Organic Remediation Chlorinated solvents Pseudomonas syringae pv. syringae B728a 5261.0604 4303.7335 6063.3428 8791.1633 5643.3274 119856034 atzB Organic Remediation Herbicides related compound Pseudomonas putida W619 5154.6475 62180.3389 111018644 nmoA Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 3300.8811 154162182 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 4043.7209 4438.5655 20538.6814 12499.3594 34102804 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Chromobacterium violaceum ATCC 12472 3756.6569 8197.8515 157961630 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 9049.5930 11805.4320 22932.8862 33335.5252 44903457 tfdB Organic Remediation Aromatics Chlorinated aromatics Sphingobium herbicidovorans 4144.7684 10381.7310 71158806 ChrA Metal Resistance Chromium Nocardioides sp. JS614 4347.8619 8371.8085 52699674 rubisco Carbon cycling Carbon fixation Azospirillum lipoferum 8957.1990 24243.0833 4142.3710 49416.4234 50602.5623 26278822 narG Nitrogen Denitrification uncultured bacterium 8155.7336 76803790 alkB Organic Remediation Other Hydrocarbons Ralstonia sp. PT11 6374.2047 11043.3258 7911.5179 510390 cellobiase Carbon cycling Carbon degradataion Cellulose Pantoea agglomerans 24570.6116 12462.0977 52396.2862 43546.9157 31778.9745 118758722 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 4215.0488 25509.5621 14219.4567 17544988 pcc Carbon cycling Carbon fixation Ralstonia solanacearum GMI1000 12762.5365 63705.7661 10126.2374 88919495 nhh Organic Remediation Aromatics Nitoaromatics Acidiphilium cryptum JF-5 3081.4146 46139453 ppx Phosphorus Phosphorus utilization Gibberella zeae PH-1 5083.7648 10589.8599 14875.4197 60023.7282 145408836 CopA Metal Resistance Copper Caldicellulosiruptor saccharolyticus DSM 8903 3488.6835 5677.3336 68567510 alkK Organic Remediation Others Sulfolobus acidocaldarius DSM 639 8011.4662 49939.9828 5017.4432 15218.9603 43775.0337 62667.6102 50872.9355 16595.3380 11275.7741 50085095 TerZ Metal Resistance Tellurium Acinetobacter sp. ADP1 4134.5941 5053.6847 6705.9591 71368137 TerC Metal Resistance Tellurium Nocardioides sp. JS614 7939.8664 3918.7816 27169.5902 47177.9650 30620.0841 124488189 napA Nitrogen Dissimilatory N reduction uncultured bacterium 5374.8221 14459.4066 38602.6992 45193.3346 18854.6301 8767.2568 116646289 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia cenocepacia HI2424 4121.1154 11981.2422 6525.9852 19481356 amoA Nitrogen Nitrification uncultured ammonia-oxidizing bacterium M6-3 7547.7908 4512.9188 9464.2869 25437.5931 34067.5187 39515.3252 7992.6533 152981870 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille 8773.6022 4372.0989 5955.8431 126132560 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 3309.3585 77973953 ZitB Metal Resistance Zinc Yersinia frederiksenii ATCC 33641 3067.2088 121552986 vanA Carbon cycling Carbon degradataion Others Verminephrobacter eiseniae EF01-2 4115.3655 3250.0583 6188.7913 15065.0741 5043.9410 89895847 hydrogenase Energy process Energy process Desulfitobacterium hafniense Y51 3686.7995 26189.6096 10356.9417 11153.8889 11825.2901 134052430 Al Metal Resistance Aluminum Desulfotomaculum reducens MI-1 5324.3011 11186.5881 20485.9195 118589805 amyA Carbon cycling Carbon degradataion Starch Stappia aggregata IAM 12614 6283.5746 3132.5707 29425.6948 15867.8442 14327.0350 119816795 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 11677.0764 32057.1543 70238.0443 71646.1846 48053.8601 15677732 ppk Phosphorus Phosphorus utilization Neisseria meningitidis MC58 6124.1816 10859.7568 8192.4989 12845.7501 22331.7576 32611.1453 71689.4797 12049.5221 9265.0286 8758.2348 156235293 nifH Nitrogen Nitrogen fixation Roseiflexus castenholzii DSM 13941 16914.4351 69132.6076 51352.4012 148652384 czcD Metal Resistance Cadmium,Cobalt,Zinc Psychrobacter sp. PRwf-1 25487.1459 25468.6141 38070.7116 41588.2806 67386.6808 68343.6874 6115.3161 6311.7780 85109288 tfdA Organic Remediation Aromatics Chlorinated aromatics Neurospora crassa OR74A 34046.2107 38432.0742 4331.7035 6981.2865 62989.8514 57545.4736 70800.9989 7369.4140 113897440 ChrA Metal Resistance Chromium Herpetosiphon aurantiacus ATCC 23779 6825.5446 8454.7533 3693.9937 13961.5872 15332.1802 71558041 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A 5404.9942 16820.4466 15073.2278 99030605 ppk Phosphorus Phosphorus utilization uncultured bacterium 5641.1412 145570144 nitro Organic Remediation Others Pseudomonas stutzeri A1501 5532.3405 4931.0441 15714.2847 152972343 CadA Metal Resistance Cadmium Klebsiella pneumoniae subsp. pneumoniae MGH 78578 4224.8550 7035.9246 5709.3582 16674.1461 157679437 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 10570.6079 156865943 ara Carbon cycling Carbon degradataion Hemicellulose Clostridium leptum DSM 753 6977.0382 67922.6787 61685.5517 146339487 nasA Nitrogen Assimilatory N reduction Bradyrhizobium sp. ORS278 3897.1669 6782.0130 91774140 dsrA Sulphur sulfite reductase Methanococcoides burtonii DSM 6242 5110.9095 22218.3726 24212.8589 156110372 ChrA Metal Resistance Chromium Bacteroides ovatus ATCC 8483 5005.5077 157679103 rubisco Carbon cycling Carbon fixation Acidithiobacillus thiooxidans 3331.9551 118686347 nagL Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 7606.0356 10834.1591 19799.0050 31489.9736 7031.6537 12657.0831 110825676 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. RHA1 4941.9591 119116128 bphC Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 5707.5504 14865.7817 24885.7353 5248.8156 78194684 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacter metallireducens GS-15 11233.1116 5244.0908 51326.6799 6593.4199 24583.8373 169266 lip Carbon cycling Carbon degradataion Lignin Phanerochaete chrysosporium 12928.3280 30145.6206 14067.8926 84711652 phdG Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 8665.9186 51085.8343 9971329 gyrB other category Phylogenetic marker Cellulophaga lytica 7145.2827 44352.1695 20515.4303 29864.7910 89055304 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 5943.0870 12465.2910 12747.1366 83772446 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus oryzae 6227.7438 11717.7858 77972591 nrfA Nitrogen Dissimilatory N reduction Yersinia frederiksenii ATCC 33641 3863.1253 121709469 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 11473.2186 10919.7772 21814.3393 15198.3302 46586.5457 49528324 cellobiase Carbon cycling Carbon degradataion Cellulose Candida glabrata CBS 138 10688.6552 9616.6238 41784.4400 44731.9327 38491.2364 46138579 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 3975.1422 3556.3811 71143450 endochitinase Carbon cycling Carbon degradataion Chitin Trichoderma atroviride 14707.6478 23333.7488 121607822 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 4279.0438 49527452 cellobiase Carbon cycling Carbon degradataion Cellulose Candida glabrata CBS 138 7612.2801 4259.2254 14442.9971 16004.9478 157963251 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 3234.5602 147832086 nifH Nitrogen Nitrogen fixation Clavibacter michiganensis subsp. michiganensis NCPPB 382 4563.4720 106765911 endochitinase Carbon cycling Carbon degradataion Chitin Clostridium phytofermentans ISDg 12571.4257 11565.7834 7260.8928 16497.6761 30759.3517 33972.1215 38085.2223 5970.9713 12746408 endochitinase Carbon cycling Carbon degradataion Chitin Serratia liquefaciens 13094.5626 4951.2366 50024.1061 13038.6910 31968.1405 110167636 xylF Organic Remediation Aromatics BTEX and related aromatics Trichodesmium erythraeum IMS101 4612.7869 119816418 atzC Organic Remediation Herbicides related compound Pseudomonas putida W619 16404.7405 25075.3579 6712.2001 27650.5868 23305.8963 31238.8693 121583382 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 11029.0053 9646.3811 9570.3933 6452.6071 149822860 ChrA Metal Resistance Chromium Limnobacter sp. MED105 8800.6705 3225.2950 4046.6229 11856.1852 7627.0476 5049.4795 87294989 alkK Organic Remediation Others Moraxella osloensis 6537.4369 8829.4355 25418.0509 154150311 atzA Organic Remediation Herbicides related compound Candidatus Methanoregula boonei 6A8 7140.7157 19012.4620 27446.7977 12107.7106 85672710 pcc Carbon cycling Carbon fixation Roseovarius sp. 217 5287.8147 45242.7450 21899.0565 27518.1317 78484530 TehB Metal Resistance Tellurium Thiomicrospira crunogena XCL-2 4429.6246 146188521 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4695.4914 8107.3859 114341130 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 5243.6142 23224.9323 7356.9621 17284.3453 5719.1372 118668489 mer Metal Resistance Mercury Delftia acidovorans SPH-1 5223.2296 18086.8543 28592.8279 118728128 TerC Metal Resistance Tellurium Clostridium cellulolyticum H10 6211.3601 28850865 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas syringae pv. tomato str. DC3000 6920.7820 17272.9033 46994.7035 1839391 exochitinase Carbon cycling Carbon degradataion Chitin Trichoderma harzianum 4379.7814 14573.5002 18997.7438 7573260 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. LB126 7815.2753 29020.3630 12656.7151 121305441 CadA Metal Resistance Cadmium Thermosinus carboxydivorans Nor1 3879.2836 5177.6943 39946388 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 6596.9665 12663.3618 16768.2276 13463.0241 33926.6820 43882.3833 28411087 ZntA Metal Resistance Zinc Tropheryma whipplei TW08/27 3120.4651 14297.3011 15676.0328 116609951 pcc Carbon cycling Carbon fixation Arthrobacter sp. FB24 12319.9602 10201.3720 45717.1506 31801.4717 8689.6964 90413815 catB Organic Remediation Aromatics BTEX and related aromatics Photobacterium profundum 3TCK 4886.9182 17100.1389 8921.5285 13340.0826 71970.4992 41837.7731 11226.7401 149175 nitA Organic Remediation Aromatics Other aromatics 6326.2498 18206.7124 7595.7167 8326.1821 23222.0527 32775.2831 45856.8238 6366.0698 7554.4057 134135203 Arylest Organic Remediation Aromatics Other aromatics Burkholderia vietnamiensis G4 7337.2546 25939.4471 16999.6867 32917.5545 110551394 gyrB other category Phylogenetic marker Methanoculleus marisnigri JR1 11952.4618 3850.0419 14189.0420 11925.5509 118577254 silP Metal Resistance Silver Pelobacter propionicus DSM 2379 7301.2558 7724.8067 46089.4961 27058.9474 46389799 mcrA Carbon cycling Methane Methane production uncultured archaeon 11492.4500 5109.1292 15144.4212 47387.1560 43871.1490 8490.9037 117980996 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 5016.6056 25732.1351 12406.0158 91792821 cytochrome Energy process Energy process Shewanella denitrificans OS217 5175.4543 5203.6457 8885.0023 21839.7476 10954.3985 28852930 linB Organic Remediation Pesticides related compound Pseudomonas syringae pv. tomato str. DC3000 3916.5028 14431.3956 18820.8579 17162.6207 146190575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 6705.9076 15550.4626 20489.6021 10173485 ChrA Metal Resistance Chromium Bacillus halodurans C-125 5809.9014 4637.9496 12375.4783 22126.8667 21221249 cellobiase Carbon cycling Carbon degradataion Cellulose Streptomyces coelicolor A3(2) 8556.0968 26590.4597 30227.3921 38490075 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens 5950.6114 3320.1375 35427.9984 31284.2777 27008.9552 157405163 ChrA Metal Resistance Chromium Methylobacterium populi BJ001 14974.7306 22875.2081 89451.6320 43328.7751 118471252 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 8633.1641 5540.7080 31650.5410 23764.5131 21551.2429 7638.2102 22854.6815 91786532 pcaG Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 7301.9973 3766.7301 50056.0365 37845.5807 57834.5491 7043.1973 9042.7753 134094424 sox Sulphur Sulphur oxidation Herminiimonas arsenicoxydans 15172.2551 8737.4971 4070.8657 25491.7793 33165.1841 44547.1443 508289 tftA Organic Remediation Aromatics Chlorinated aromatics Burkholderia cepacia 3247.6862 3277.3275 7348.4405 5788.3723 3372194 nifH Nitrogen Nitrogen fixation unidentified bacterium 6050.9281 4604.5221 42516.7136 58936.6658 32941.2439 40747734 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 8954.4207 31768.0564 60071.8127 64967.2536 59528.0093 149278018 pcc Carbon cycling Carbon fixation Pedobacter sp. BAL39 3174.4318 12663.9256 119896537 silC Metal Resistance Silver Azoarcus sp. BH72 17581.2361 44501.6119 10513.3242 38642.0932 71727.6340 27361.1834 47080.1058 71741024 TerC Metal Resistance Tellurium Pelobacter propionicus DSM 2379 6320.0545 9847.4263 33289.0880 52264.1492 56698616 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 3002.6279 8539.9158 3890.6503 13031.8157 26409.9810 24940371 dehH109 Organic Remediation Chlorinated solvents Rhizobium sp. NHG3 6739.0137 14259.1138 25043.8981 59950.5634 53496.3571 4711.9130 145575474 ChrA Metal Resistance Chromium Pseudomonas mendocina ymp 3949.8209 6755.5693 12970.8183 89072783 xylA Carbon cycling Carbon degradataion Hemicellulose Photobacterium sp. SKA34 5100.6991 17951.1200 14285.7316 126736898 phn Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 9804.8293 24147.1988 5647.9331 40650.3554 72448.3443 13320.1874 25565.1256 19078.2927 115421410 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 3905.9028 3627.6739 91697165 Catechol Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 7005.3613 4735.5542 7412.5884 38355.6065 84621.9201 51059.6612 77954982 ChrA Metal Resistance Chromium Marinobacter aquaeolei VT8 24357.7994 18331.4500 14481.6282 32370.4521 60157.8301 48843.8686 68761.6386 8679.4626 66766792 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. 8004 6033.5605 4289.0298 10266.2561 36849.4215 24505.3478 27896.9445 5153.0136 5860.8119 9723.7134 94415192 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas aeruginosa PA7 8179.8503 7193.5085 17857.4886 22887.0503 41505.9583 95110658 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas 15987.8601 3892.5096 49380.2450 58647.1989 43096.8142 70992975 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus fumigatus Af293 8770.9449 56967.8339 17654.6698 34376.7614 22299223 ppx Phosphorus Phosphorus utilization Thermosynechococcus elongatus BP-1 4504.5976 15627.6286 77965304 nbaC Organic Remediation Aromatics Nitoaromatics Burkholderia sp. 383 3689.0148 8608.4710 7061.4191 13330.7115 16573.5772 16828.7806 9283.2114 8197.9018 18889.0519 104304159 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 19009.0861 118046180 catechol_B Organic Remediation Aromatics Other aromatics Chloroflexus aggregans DSM 9485 5499.1924 4017.5914 15055576 dsrA Sulphur sulfite reductase Desulfotomaculum ruminis 4183.9155 46650.7790 54552.7800 37116.0318 110819980 alkK Organic Remediation Others Rhodococcus sp. RHA1 7256.7362 3209.5317 7467.0516 15338.5611 27274.1840 5912559 mcrA Carbon cycling Methane Methane production Methanococcus voltae 9956.8463 4704.4048 18351.4459 47090.6659 57168.8363 36601.4259 6349.9334 77920195 ArsC Metal Resistance Arsenic Pelobacter carbinolicus DSM 2380 2892.6504 60491273 gyrB other category Phylogenetic marker Bacteroides fragilis NCTC 9343 10383.2154 9993.9109 43434.3921 91132.8769 63459.5996 86159488 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C 5441.4783 16747.7208 7410.3441 24688.6269 6014661 pnbA Organic Remediation Aromatics Nitoaromatics Ralstonia pickettii 8538.4562 12041.3356 4334.0233 9345.6462 40079.8472 39957.9082 40475.0719 9021.9730 140713573 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium 6490.2694 24879.4110 6096.8398 5101.3207 60947.3714 17239.7611 13795.8657 116334321 ara Carbon cycling Carbon degradataion Hemicellulose Lactobacillus brevis ATCC 367 15270.8652 62512312 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 2976.5880 126629723 czcD Metal Resistance Cadmium,Cobalt,Zinc Marinobacter sp. ELB17 6569.1728 39881.3228 19929.6670 29429.1538 113896093 czcD Metal Resistance Cadmium,Cobalt,Zinc Herpetosiphon aurantiacus ATCC 23779 6611.5442 5278.2584 6428.6380 25687.6285 23316.8201 32353.2691 5844.6491 5237.4910 6105.1633 150955273 HcaACD Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 6172.6706 8637.3353 83755999 mer Metal Resistance Mercury Salinibacter ruber DSM 13855 5329.2060 3347.8638 39567.5501 14582.2459 28695.9013 5418.5155 158330288 pcc Carbon cycling Carbon fixation Azorhizobium caulinodans ORS 571 8258.1913 4692.0787 14816.7292 25195.4668 91783660 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 4773.3908 7481.7670 12662.6193 23442.0592 41918.4457 49559.1130 11742.5830 20156.7544 118681426 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter lovleyi SZ 4629.3797 9237.6201 11805.8280 71156382 FTHFS Carbon cycling Acetogenesis Nocardioides sp. JS614 4014.4502 78102121 nifH Nitrogen Nitrogen fixation uncultured bacterium 3801.9375 22252768 nirK Nitrogen Denitrification uncultured bacterium 4485.1087 2402.5916 5020380 hydrogenase Energy process Energy process Rhodobacter capsulatus 3523.9569 20502007 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7785.3817 151559546 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Ochrobactrum anthropi ATCC 49188 9388.9670 10866.3556 3664.1168 2916.1085 31791.8599 122090525 arsB Metal Resistance Arsenic Yersinia enterocolitica subsp. enterocolitica 8081 6376.5289 41129.3210 31100.3869 51778.9284 16354.6499 11903.6486 15860.1123 126465519 cda Carbon cycling Carbon degradataion Starch Staphylothermus marinus F1 4658.7438 9469.8848 4660.9447 32266626 gyrB other category Phylogenetic marker Helicobacter hepaticus ATCC 51449 8194.7757 5218.0719 20729.9104 9999.7918 13891.1352 91779734 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 3790.4045 50982472 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 3263.4717 7023.7950 2661684 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces coelicolor A3(2) 12225.0429 8056.6667 35959.9065 37630.1698 156859532 CopA Metal Resistance Copper Bacteroides uniformis ATCC 8492 2914.9043 9307.2958 11282.4362 20680.8904 22323.6399 14649.4515 91794547 cytochrome Energy process Energy process Shewanella denitrificans OS217 6348.1184 3693.8076 7184.1628 34102640 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 6215.5072 7092.6865 3416.6789 22916.2927 21239.4819 158138798 napA Nitrogen Dissimilatory N reduction uncultured bacterium 3625.2054 149925301 czcA Metal Resistance Cadmium,Cobalt,Zinc Limnobacter sp. MED105 5798.1197 116254793 atzD Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 4391.2719 5095.0016 4545.5117 145235213 cellobiase Carbon cycling Carbon degradataion Cellulose Aspergillus niger 9166.3563 73298.6088 91755.9330 67406.1430 64844.4245 37000.3839 75276.2323 90262.9484 102225.3091 86005.0387 76666836 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 29420.7378 79817.4879 54406.1195 83726398 nahF Organic Remediation Aromatics Polycyclic aromatics Ralstonia solanacearum UW551 17214.6858 54427.1641 43367.3636 73662762 Al Metal Resistance Aluminum Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 7023.6250 38791.8674 34903.6592 27051.6158 62003575 narG Nitrogen Denitrification uncultured bacterium 7064.7101 4042.4305 8476.7714 66299.6403 32509.7096 36038.4693 21219612 linB Organic Remediation Pesticides related compound Streptomyces coelicolor A3(2) 5338.6435 15564.7055 34133.4628 17744100 nmoA Organic Remediation Aromatics Nitoaromatics Agrobacterium tumefaciens str. C58 7065.7019 5652.2502 14839.8224 11772.7880 10659.8400 6314.5814 146295260 CadA Metal Resistance Cadmium Caldicellulosiruptor saccharolyticus DSM 8903 4324.9364 60416980 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Fusarium oxysporum f. sp. dianthi 3963.0838 15944.5320 55076.3956 8007.9250 7223.4153 29466064 norB Nitrogen Denitrification uncultured bacterium 5153.8782 10869.8257 8225.5088 2635316 ara Carbon cycling Carbon degradataion Hemicellulose Bacillus subtilis subsp. subtilis str. 168 7646.5555 16117.0508 12059.1274 53850907 dsrA Sulphur sulfite reductase anaerobic bacterium sk.prop8 10656.6584 30642.8673 14268.5908 22287.0640 77457139 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 5764.2867 5283.5401 14310.2249 10746.3685 149361062 merP Metal Resistance Mercury Marinobacter algicola DG893 6325.2651 9470.1443 5014.3453 6976.4883 29275.1672 29091.9031 36680.8462 38505868 SilA Metal Resistance Silver Synechocystis sp. PCC 6803 20060.4800 4962.9022 6789.3823 13357.8776 95975.5897 68275.2990 46850236 nirS Nitrogen Denitrification uncultured bacterium 4210.4488 31213.9708 19293.0186 13898429 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium 7427.8619 118675186 PobA Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 8315.5245 3775.5119 17695.3137 29843.4614 68204.0388 44924.9653 7158.8555 10209.7114 8336.5961 78365391 FTHFS Carbon cycling Acetogenesis Shewanella sp. PV-4 5158.1162 3429.0331 16253.9153 12580.7698 84382965 gyrB other category Phylogenetic marker Janibacter sp. HTCC2649 3924.5660 8943.4839 7050.0839 14179.6474 4669.7965 134101895 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 13730.9333 9195.9870 4212.9798 4897.4794 46900.4906 18173.1798 21343.9267 7405.3344 5197.3508 139002684 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 7616.0562 10436.1013 9393.5575 67382.8884 54922.9397 134299330 arsB Metal Resistance Arsenic Desulfotomaculum reducens MI-1 10446.5541 84372831 dsrA Sulphur sulfite reductase Methanosphaera stadtmanae DSM 3091 5703.3312 69394.5325 12092.4260 7888.0313 49787.9326 84748.4000 27278.3404 4240.9277 40253020 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6822.4822 10056.1540 154159886 pcc Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 4146.6420 5189.9788 9889.1706 3745.4650 68159573 gyrB other category Phylogenetic marker Clostridium asparagiforme 6557.3913 14495.9764 17872.4250 25761.2814 36889.3074 45509.8182 8256.7835 20737.7450 86136004 dehH109 Organic Remediation Chlorinated solvents Roseobacter sp. MED193 4897.0467 9963.2471 9956.6746 16587.2668 134136489 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 8634.5869 2919.7597 28291.8724 50160.3706 16993.8497 57335576 nirS Nitrogen Denitrification uncultured bacterium 6113.3889 17511.7910 11730.5577 134267111 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 4283.2365 3836.9793 16584.4858 8025.3025 124271121 FTHFS Carbon cycling Acetogenesis uncultured bacterium 5712.0060 157679439 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 38780.1879 46816.2432 11550.7538 8574.3584 86125.9548 75566.1898 76402.4464 6163.9016 10198.3338 115397327 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 5288.8467 26819.6275 15776.8919 94424683 ara Carbon cycling Carbon degradataion Hemicellulose Sphingomonas sp. SKA58 10044.9876 27257.2052 31018.5493 94314409 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 11565.8321 4515.9807 7502.2332 6502.0477 7214.3784 28855822 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 5157.1458 34017082 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 3896.6004 10111.7598 60594779 cda Carbon cycling Carbon degradataion Starch Anoxybacillus flavithermus 12514.8490 5002.2624 4889.5097 28296.3161 38480.4393 5550.6097 6710.0056 5963.2161 85775219 sox Sulphur Sulphur oxidation Anaeromyxobacter dehalogenans 2CP-C 6027.3665 2595.7780 99030461 ppk Phosphorus Phosphorus utilization uncultured bacterium 8076.3620 18086.4615 12743.3157 118007842 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas mendocina ymp 4894.1337 17136.8557 20163.1673 84668568 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 6521.1060 114227654 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 4759.4837 16106.6102 11263.5206 47573625 rubisco Carbon cycling Carbon fixation Rubrivivax gelatinosus PM1 11061.3128 5315.5940 47802.6128 48666.3871 3709.6433 88944312 ZntA Metal Resistance Zinc Desulfotomaculum reducens MI-1 12623.9362 8483.7100 8144.9126 20034.2213 29463.7182 18933.4663 17666.6446 7804883 exoglucanase Carbon cycling Carbon degradataion Cellulose Leptosphaeria maculans 11013.4180 158138735 napA Nitrogen Dissimilatory N reduction uncultured bacterium 4367.2980 7733.7976 6368.2123 23454.3843 55831.4760 1001835 nitA Organic Remediation Aromatics Other aromatics Synechocystis sp. PCC 6803 6419.7504 2537.0764 7984.5225 8859.1871 22647.7488 7952.0302 148657873 CopA Metal Resistance Copper Roseiflexus sp. RS-1 6034.4018 4861.1181 49025.7805 35588.1351 32301.1456 38234622 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium diphtheriae NCTC 13129 3412.5288 18805.8384 10257.3144 10184710 vdh Carbon cycling Carbon degradataion Others Pseudomonas sp. HR199 2888.7784 39956518 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Magnaporthe grisea 70-15 6998.3623 4438.6400 8571.4742 6961.1923 158138839 narG Nitrogen Denitrification uncultured bacterium 3137.1777 11859.4153 26809.6835 38678.9269 48884.8115 4604.8191 6621.6745 134094017 dehH Organic Remediation Chlorinated solvents Herminiimonas arsenicoxydans 9573.8017 23996.2901 12721.3316 13438.4092 57673.6543 61720.5629 9582.1164 8980.8679 10916.0357 115397073 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus terreus NIH2624 4161.7455 27149.0406 114321506 phtA Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 6668.9546 7834.7144 28095.3110 12161.5559 7801.5933 7877.4706 16559.8252 158138755 napA Nitrogen Dissimilatory N reduction uncultured bacterium 3019.8747 10726.1339 29824653 nirS Nitrogen Denitrification uncultured bacterium 6585.1924 11563.2836 149278701 mer Metal Resistance Mercury Pedobacter sp. BAL39 3761.3625 12533.4288 90195874 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 5639.9670 3620.4921 8933.1354 23351.4022 18074.9112 7971.9379 10107.4649 14276800 dsrB Sulphur sulfite reductase Desulfotomaculum geothermicum 7687.0805 148260088 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 4488.8282 73537680 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 5937.8817 7958.3559 38446.1813 24917.4500 3429.3143 156446963 nosZ Nitrogen Denitrification uncultured bacterium 5204.4553 89143200 gyrB other category Phylogenetic marker Microbacterium luteolum 3885.5142 3941.1174 110341164 silC Metal Resistance Silver Chlorobium ferrooxidans DSM 13031 5754.4067 20986.1323 18750.4398 78223673 cytochrome Energy process Energy process Geobacter metallireducens GS-15 3676.8196 3048.2558 4236.5747 5300.6099 71737422 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. phaseolicola 1448A 5924.8992 7591.0110 119463866 xylF Organic Remediation Aromatics BTEX and related aromatics Nodularia spumigena CCY9414 10572.2645 15547.5282 7528.9761 31250.7037 20143.3921 25658.2677 9953.3767 89348595 tmoABE Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 4170.9473 7751.7713 7723.4991 13457.6806 6196.1193 9473.4388 8920.5019 86168968 gyrB other category Phylogenetic marker Synechococcus sp. RS9917 4189.5172 6576.6803 12134.5472 25638.4354 12627.3005 9331.7110 5677.8120 9159.3414 145243378 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 7246.9523 9013.3414 8590.8798 111116464 xylG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 4942.2951 6071.6065 6254.4122 8431.5630 5366.2165 3892198 dsrB Sulphur sulfite reductase Archaeoglobus profundus 11431.5329 48998.0552 50052.4632 34428.0563 39356.2179 73538760 chnB Organic Remediation Other Hydrocarbons Ralstonia eutropha JMP134 2716.0406 89893108 nifH Nitrogen Nitrogen fixation Desulfitobacterium hafniense Y51 3303.3582 10613.6050 29053.3647 41673.0554 20745.5223 88703744 CusA Metal Resistance Copper gamma proteobacterium KT 71 6677.8135 8200.7534 4099.8638 5956.5231 16397.1745 29649.1194 3096.0963 156861181 amyA Carbon cycling Carbon degradataion Starch Bacteroides uniformis ATCC 8492 9984.2190 67910920 CODH Carbon cycling Carbon fixation Polaromonas sp. JS666 13136.6091 12463.5958 32659.9054 70975.0531 9480.9997 17133032 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Nostoc sp. PCC 7120 17393.9577 99118.9177 7230.6266 7138.1492 36651.5764 94079.5776 52014.1836 5041.0143 116179488 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 6793.7893 39412.8542 30682.0740 42584.5443 4038.1305 108798265 pcc Carbon cycling Carbon fixation Mycobacterium sp. MCS 7937.5926 66349.8322 32454.4749 84043015 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 9266.2795 5586.1449 11283.6923 29941.9982 77385595 ZntA Metal Resistance Zinc Pseudomonas fluorescens PfO-1 2685.4466 9645.9755 6864.7257 118030226 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 4804.8010 18418.8327 22835.6750 12568.1118 157960581 ChrA Metal Resistance Chromium Shewanella pealeana ATCC 700345 4942.2342 4271.6993 23987.4813 156446925 nosZ Nitrogen Denitrification uncultured bacterium 3162.3077 7071.9496 88947219 ppx Phosphorus Phosphorus utilization Desulfotomaculum reducens MI-1 5252.3542 29419.0300 3764.2182 10815.4634 26288.5715 55486.6469 43712.0258 11091.5853 9347.5663 12276.2918 158111894 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec 3764.5894 6685.8858 16555.2820 37590.1711 14338.5119 43187.1012 27679.0232 15819.8614 23898.1469 88783391 catB Organic Remediation Aromatics BTEX and related aromatics Robiginitalea biformata HTCC2501 7658.8344 4926.6503 7452.3342 6896.5080 154449709 exoglucanase Carbon cycling Carbon degradataion Cellulose Fusicoccum sp. BCC4124 6475.0418 8625.5930 31743.5489 39469.8604 23374.2139 46307912 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4319.8413 13058.8358 3947.6060 4960.8348 22042.1547 4408.5463 7554.0693 7045.1701 118593746 atzB Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 4800.1124 7476.4006 3658.6387 37656.1010 37173.8865 27544672 gyrB other category Phylogenetic marker Legionella spiritensis 9811.7573 23897.6380 19433.3187 126218145 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei 668 16262.1954 81109.8093 43276.4388 120610787 silC Metal Resistance Silver Acidovorax avenae subsp. citrulli AAC00-1 5294.4537 27979.3062 6567.3202 18319.2807 45122.8873 60735.1431 14354.6371 9971.9721 149810237 phn Organic Remediation Herbicides related compound Roseobacter sp. AzwK-3b 7239.5081 14713.2653 33611.2922 55444.1248 11232.7077 18150952 BADH Organic Remediation Aromatics Other aromatics Pseudomonas putida 4640.8137 7649286 PobA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata 5235.8789 24709.1232 21099.3975 34892.1613 35763.6023 121605372 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 6974.0107 26989.8340 17310.6923 68568603 CODH Carbon cycling Carbon fixation Sulfolobus acidocaldarius DSM 639 6546.4376 37978.4092 35686.1365 62612.5287 58957.1941 90104852 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB18 5997.4938 18317.0610 83026002 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 7419.9268 7341.2726 23078.5924 31530.7586 14944.8293 9160.7332 10280.5562 12563.1405 78171301 alkK Organic Remediation Others Chlorobium chlorochromatii CaD3 5279.8717 5736.1742 15111.9935 19328.0635 16813.3631 19603.6826 8469.0332 149248424 endochitinase Carbon cycling Carbon degradataion Chitin Lodderomyces elongisporus NRRL YB-4239 9017.9697 20241.2611 5279.7651 14064.8527 23102.4063 18646.8229 21768.7300 157846392 TerC Metal Resistance Tellurium Shewanella pealeana ATCC 700345 4258.2608 118424373 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 12229.9941 35880.0667 57853.0824 44052.8928 99036457 nreB Metal Resistance Nickel Silicibacter sp. TM1040 5640.7831 14132.8899 16220.8591 33641289 ppk Phosphorus Phosphorus utilization Prochlorococcus marinus str. MIT 9313 8424.5438 12444.6542 14357.9346 52653.5306 31287.5069 54643.9702 7281.4027 56710254 nitro Organic Remediation Others uncultured bacterium 6259.5753 116672619 pcaG Organic Remediation Aromatics Other aromatics Arthrobacter sp. FB24 5625.0883 11092.8661 43380.6556 26871.2302 6435.1925 13531.9137 16389.4163 157679052 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8548.2820 25067.5782 29490.6240 47490.4837 145232502 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 3328.4952 27355843 dehH109 Organic Remediation Chlorinated solvents Bradyrhizobium japonicum USDA 110 4080.8144 22961.5384 9877.5623 38804.1310 217160 rubisco Carbon cycling Carbon fixation Acidithiobacillus ferrooxidans 7966.2063 3429.2571 29892.4918 27227.1154 117579871 nbaC Organic Remediation Aromatics Nitoaromatics Gramella forsetii KT0803 5328.0808 6736.9972 11636.8770 40835.5100 119669174 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 10932.1429 15073.2447 6142.5694 8016.9333 84249.3470 68874.9748 72640.3167 5822.7914 8787.1215 90436701 ara Carbon cycling Carbon degradataion Hemicellulose Flavobacterium johnsoniae UW101 17743.2463 8115.5881 77897.4489 81414.5219 49916.9560 110820994 alkK Organic Remediation Others Rhodococcus sp. RHA1 12475.9269 4922.4379 32201.4003 134266357 Al Metal Resistance Aluminum Geobacillus thermodenitrificans NG80-2 5412.7874 6016.4272 22014.9622 6113.2551 12685.3026 157373502 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 8777.5580 40622.6974 27323.5696 76666604 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 46180.7849 132711.4061 81398.1520 50292965 cellobiase Carbon cycling Carbon degradataion Cellulose Candida glabrata 14969.3857 10978.1372 20686.8819 25517.0848 36053.4009 33603659 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 17716.9292 49179.8948 9770.3117 89677.7501 60882.3770 87044.0077 79427.6432 33489.7248 66609.1423 112821398 carA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. KA1 14341.0973 7351.2707 2543.9009 27359.0245 30419.3667 32546.7651 13017.5604 19542.8789 34108.3112 23012809 ChrA Metal Resistance Chromium Magnetospirillum magnetotacticum MS-1 9134.3090 5101.4899 12661158 endochitinase Carbon cycling Carbon degradataion Chitin Cellulomonas sp. GM13 30901.6889 2969.0691 4327.6212 80034.4404 80413.0663 60299.4618 5651.8023 49477914 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus thuringiensis serovar konkukian str. 97-27 3767.6786 13435.2237 10282.4459 10751.0300 69866.3440 10119.8128 46010.2347 15167.3691 22939.5374 40253032 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7936.7221 2577.6247 6399.6563 3378446 akbF Organic Remediation Aromatics BTEX and related aromatics Novosphingobium aromaticivorans 11229.7082 8273.7536 33466.6523 51046.2084 62654.5818 64105.4679 24405.6008 84393644 ppx Phosphorus Phosphorus utilization Vibrio splendidus 12B01 3570.3785 10131.6815 24418998 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces coelicolor A3(2) 9251.0086 11485.9866 33975.4733 126174562 glucoamylase Carbon cycling Carbon degradataion Starch Shewanella baltica OS155 4369.5485 6178.4074 12391.3944 2828543 ureC Nitrogen Ammonification Actinobacillus pleuropneumoniae 6458.5034 19982.0402 5557.2513 9825.2260 32583.1295 35286.8670 11104.7036 62391506 mdlD Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 8591.2748 31135.5923 9457.2669 76352.5282 59669.1416 22449909 nifH Nitrogen Nitrogen fixation uncultured bacterium 6612.4505 10035.2105 25909.9382 34780.9218 151281379 czcD Metal Resistance Cadmium,Cobalt,Zinc Janthinobacterium sp. Marseille 5790.3413 91698043 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 14595.2205 3712.0559 7358.2361 23014.4230 17413.6630 27319.1413 5045.1923 118424343 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9347.8631 12018.1208 31570.7991 28596.7705 118567721 sox Sulphur Sulphur oxidation Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 25744.3301 32081.0815 21071.9336 18794.8065 151357509 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7687.9706 3849.0745 6727.7225 110680804 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 5936.2742 12371.2641 8469.4496 68263062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium jeikeium K411 5883.0005 7445.0049 4995.0920 3457.0524 83749598 cbdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia solanacearum UW551 5154.8552 8040.4578 6053.1852 13854.6262 5251.8463 119774080 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Shewanella amazonensis SB2B 8584.8566 55376925 FTHFS Carbon cycling Acetogenesis Haloarcula marismortui ATCC 43049 9495.6645 30854.0605 11936.5869 25883.3334 150957192 merP Metal Resistance Mercury Klebsiella pneumoniae subsp. pneumoniae MGH 78578 4981.0971 6178.4333 28311.7761 31804.2895 19456.3549 2682.2980 119468370 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Alteromonadales bacterium TW-7 10325.1501 18391.2508 11738.1556 15431.2807 90337524 sox Sulphur Sulphur oxidation Aurantimonas sp. SI85-9A1 3390.5059 5796.7554 119493471 amyA Carbon cycling Carbon degradataion Starch Lyngbya sp. PCC 8106 5058.9971 32492.8269 13386.3422 28910.4753 87280980 nirK Nitrogen Denitrification uncultured bacterium 10860.6995 21503.5595 8248.6528 24322.1315 56262.9912 29138.7379 38278.4979 20597.5543 11608.4302 145702130 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 4694.5506 18229.7894 6477.8693 29768.8470 21894.3113 4192.5956 8479.2952 145228503 ChrA Metal Resistance Chromium Aspergillus niger 3968.0254 11429.8166 10980.4235 16433.3522 27269.0632 3884.8636 133738324 sox Sulphur Sulphur oxidation Herminiimonas arsenicoxydans 5949.4463 3239.9406 4813.1723 12106.8301 19016.2458 10538.3359 118194172 ureC Nitrogen Ammonification Cenarchaeum symbiosum A 5079.9287 83573379 dsrB Sulphur sulfite reductase Moorella thermoacetica ATCC 39073 7227.8647 39976129 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Magnaporthe grisea 70-15 9384.6192 16099.5359 11225.2012 14336.0626 92243.4241 43424.1427 64448.3968 12298.9590 118036687 ArsC Metal Resistance Arsenic Burkholderia phytofirmans PsJN 7826.3078 14672.9626 139003600 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4208.8217 5949.6075 6381.0097 16296.2388 61121.8061 44467.9554 116196686 tfdA Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 6855.6575 18745.8282 22745.3242 21256.1463 5605.5752 27922980 nitA Organic Remediation Aromatics Other aromatics Aspergillus oryzae 5400.2240 13169.4501 15465.6272 157285702 napA Nitrogen Dissimilatory N reduction uncultured bacterium 4189.6358 3448.0414 4545090 nosZ Nitrogen Denitrification Pseudomonas fluorescens 3241.5747 1929906 endoglucanase Carbon cycling Carbon degradataion Cellulose Macrophomina phaseolina 10649.0377 18893.7892 13234.7213 23899.4524 114328828 ureC Nitrogen Ammonification Granulibacter bethesdensis CGDNIH1 3878.7560 54015553 scnABC Organic Remediation Others Nocardia farcinica IFM 10152 5953.4642 36695.5256 86751.0055 55156.7041 6235.6775 139003567 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 6510.9999 15090.2429 32350.2727 24425.5849 18632.7112 45908.0447 30026304 ara Carbon cycling Carbon degradataion Hemicellulose Bifidobacterium longum 29226.3494 81526.7994 79317.0738 126133148 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pichia stipitis CBS 6054 5842.6468 9045.4537 8950.9441 5358.8769 10817.8148 21919.3228 31616866 ZntA Metal Resistance Zinc Mycobacterium bovis AF2122/97 15841.9110 5947.4520 11247.4252 54702.2910 37196.3605 54446.9934 13579.7229 6822.6530 110746769 endochitinase Carbon cycling Carbon degradataion Chitin Paenibacillus larvae 14951.7655 16356.1051 3206.7391 4566.6482 65890.5296 60276.7271 46757.4910 125716454 phenol_oxidase Carbon cycling Carbon degradataion Lignin Ensifer adhaerens 5133.2383 4401.1780 7343.7227 16834.9114 19926.0443 19073.9056 2190573 bclA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris 7824.9037 16321.2495 7531.8056 9447.9968 29516.9573 23280.5080 42296.8687 16845.1502 114704858 dmsA Organic Remediation Others Fulvimarina pelagi HTCC2506 5769.4092 6265.9438 27406.2823 25823.5854 7173.0310 154686168 xylA Carbon cycling Carbon degradataion Hemicellulose Bacillus amyloliquefaciens FZB42 5346.6230 23492971 PobA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 16372.0818 26622.6455 2663.8321 12698.5377 63265.2025 58098.6003 10205.3229 10394.0607 119714389 alkB Organic Remediation Other Hydrocarbons Nocardioides sp. JS614 5721.8831 6462.5844 41097.5827 126648529 catB Organic Remediation Aromatics BTEX and related aromatics Algoriphagus sp. PR1 4010.9409 16272.1510 45567.0236 25050.0573 99079220 nirK Nitrogen Denitrification Bosea sp. PD 23 7189.6750 14828.2856 56652.7984 53411.9645 6121.4954 86158699 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C 5099.5192 12432.6283 63527.1862 26270.7580 126354181 dsrA Sulphur sulfite reductase Caldivirga maquilingensis IC-167 5841.9170 57120.2574 49321.5104 45252.0969 149179803 Al Metal Resistance Aluminum Bacillus sp. SG-1 7401.7466 17933474 nifH Nitrogen Nitrogen fixation uncultured bacterium 6802.2167 19471.5363 4504.6642 5526.9334 28346.8726 27279.3838 43282.4681 9026.0963 158514466 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9542.7625 29900.7848 43583.9141 74604.2713 32925.6263 73538231 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 6459.2262 3537.7874 37659.8825 45296.7971 4801.4086 119116050 nirK Nitrogen Denitrification uncultured bacterium 2762.9855 108757552 merP Metal Resistance Mercury Myxococcus xanthus DK 1622 4229.0149 5998.5770 75704158 CopA Metal Resistance Copper Anabaena variabilis ATCC 29413 5224.7169 16754883 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus oryzae 4823.6049 16888.1487 4586278 phdJ Organic Remediation Aromatics Polycyclic aromatics Alcaligenes faecalis 21820.5982 13539.0136 22570.5411 51879.2441 43864.8154 148756010 nifH Nitrogen Nitrogen fixation uncultured bacterium 5234.8531 5981.6721 3237.0977 16148.0020 16150.6122 9919.5869 151581361 gyrB other category Phylogenetic marker Opitutaceae bacterium TAV2 5398.8864 12943.2728 5087.2151 14034.2469 18282.8495 151575135 CopA Metal Resistance Copper Ralstonia pickettii 12D 5828.6563 157375083 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 6467.8953 20394.0131 20332.4139 38016.8435 26821.7025 40455.9405 6163.7847 6322068 cellobiase Carbon cycling Carbon degradataion Cellulose Saccharomyces cerevisiae 13177.9796 27749.6501 22110.6741 36252.0924 4104759 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas stutzeri 6551.9186 8614.0840 18034302 dsrB Sulphur sulfite reductase Desulfovibrio fructosovorans 6413.0302 36397.5652 7170.7333 6348.0453 54428.6966 26454.9060 40066.7522 11172.5315 8681.3453 17418.4444 115370038 pcaG Organic Remediation Aromatics Other aromatics Stigmatella aurantiaca DW4/3-1 7866.1674 8874.0865 44060.9025 44841.6259 47364.2301 4446.2231 5677.3000 85711074 mer Metal Resistance Mercury Idiomarina baltica OS145 3714.3782 13992710 dsrA Sulphur sulfite reductase Bilophila wadsworthia 8784.3708 42386.0335 24060.7069 30878.5946 5088.1171 99030619 ppk Phosphorus Phosphorus utilization uncultured bacterium 5935.9168 4082.6848 11648.5303 88791778 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Nitrococcus mobilis Nb-231 4892.7999 4574.7850 12834.0590 15488.6388 124488309 narG Nitrogen Denitrification uncultured bacterium 9525.6925 3453.8580 6809.3246 13591.9112 120556101 ChrA Metal Resistance Chromium Marinobacter aquaeolei VT8 5444.1249 19169.0582 13135.2279 30192.9581 24431.6969 15632.2806 43756.8550 9465.3067 10901.6672 10547.6671 144905750 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 23802.3613 137928.0515 65291.0872 95948.6969 61137.3614 5725214 mannanase Carbon cycling Carbon degradataion Hemicellulose Clostridium thermocellum 3164.8543 15306.0468 6774.5338 47355.7801 44863.9012 11613.9268 150835665 PobA Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 12540.5964 4966.4674 20118.5176 6519.9501 8952.4128 6521.9345 156934116 ara Carbon cycling Carbon degradataion Hemicellulose Enterobacter sakazakii ATCC BAA-894 4664.1374 7932.2191 9917.7612 28149.0618 11792.5923 12719.9043 6029.8769 46307967 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4666.5996 4151.6087 16812.9577 22926.6849 38430.6598 3695.2478 118571958 amyA Carbon cycling Carbon degradataion Starch Mycobacterium ulcerans Agy99 5622.9669 9019.1742 28856.8952 6014583 dsrB Sulphur sulfite reductase Solar Lake Mat Clone9 4323.5460 10985.4879 24406.5388 16860.6640 18128.5971 27351087 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 12293.7933 22588.3689 8225.2339 31529.3245 51396.6078 57141.7155 11660.5416 114453261 glucoamylase Carbon cycling Carbon degradataion Starch Rhizopus oryzae 19896.5341 65492.6105 68784.0363 67026.7270 89044975 ara Carbon cycling Carbon degradataion Hemicellulose Oceanicola granulosus HTCC2516 45930.5184 59712.1728 4511.7992 99167.2483 93906.0327 78277.5952 6908.0005 62865970 gyrB other category Phylogenetic marker Borrelia parkeri 5387.3363 4516.6334 54287.2485 38259.0518 94554604 czcD Metal Resistance Cadmium,Cobalt,Zinc Deinococcus geothermalis DSM 11300 2219.0767 41078903 nifH Nitrogen Nitrogen fixation uncultured bacterium 8722.7243 11683.5176 31226.1796 91225744 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio alginolyticus 12G01 8114.2558 3963.8449 19276.6044 44265.6007 22207.6093 39427.7119 19826.5058 94497876 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. SKA58 4035.1940 4941.5859 123967093 Al Metal Resistance Aluminum Prochlorococcus marinus str. MIT 9515 12837.8972 14026667 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 6888.1310 146350794 pmoA Carbon cycling Methane Methane oxidation Methylococcaceae bacterium IT-4 3384.5192 149812610 phn Organic Remediation Herbicides related compound Roseobacter sp. AzwK-3b 12189.1392 16934.2404 19060.6956 49275.3915 157920539 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Caldivirga maquilingensis IC-167 3338.0788 13799.8039 7454.7745 58991.9699 49945.4648 52242.2657 12045.3553 152999359 cytochrome Energy process Energy process Shewanella baltica OS185 5113.5622 4235.3474 12192.8183 21968.8762 34443.0627 7479.4739 7160.0030 121594942 CopA Metal Resistance Copper Acidovorax sp. JS42 5083.5144 2483.4868 3938.3117 5034.1310 138895541 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus thermodenitrificans NG80-2 6198.5120 17953.1265 20775.7762 21672940 ppx Phosphorus Phosphorus utilization Chlorobium tepidum TLS 5504.6821 9159.1339 3990.2359 12032.6566 32236.2245 9227.2630 59711997 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio fischeri ES114 12475.0206 37287.2019 24181.1679 67526117 amyA Carbon cycling Carbon degradataion Starch Aspergillus nidulans FGSC A4 5991.0463 4933.0422 7492.4832 149811582 ChrA Metal Resistance Chromium Roseobacter sp. AzwK-3b 5459.9495 2914.8218 9374.8518 47630.8803 34685.6222 5793.5032 89275961 rubisco Carbon cycling Carbon fixation uncultured gamma proteobacterium 5536.3890 15130.4804 19002.0966 10367.2959 149941655 dsrA Sulphur sulfite reductase Archaeoglobus sp. Arc51 6557.7118 92892.3602 65070.9026 90167.7013 62016.4080 91201871 gyrB other category Phylogenetic marker Candidatus Kuenenia stuttgartiensis 3402.6528 26521.6283 27993.1952 110334320 chnB Organic Remediation Other Hydrocarbons Acidovorax sp. JS42 4882.7561 34336.3366 7701.1140 86851.5404 25933.3815 69963.9711 8534.6062 11143.2387 16283.3073 99030515 ppk Phosphorus Phosphorus utilization uncultured bacterium 6715.2723 12909.9364 3597.5738 12887.8505 70121.4547 21902.9012 41073.2953 86196158 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Magnaporthe grisea 70-15 5966.4226 40445.6579 18246.9275 12424.3850 32490765 gyrB other category Phylogenetic marker Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 4496.2883 5034.7690 11848.8628 9164.8063 82746880 FTHFS Carbon cycling Acetogenesis Clostridium beijerincki NCIMB 8052 6741.6190 7104.4569 12424.7975 25003.4421 63489.8879 16123.5322 99030561 ppk Phosphorus Phosphorus utilization uncultured bacterium 3114.9953 6075.2202 3726.1988 95111170 silC Metal Resistance Silver Pseudomonas 7825.1323 12390.5283 5068.0513 23898.0674 34411.1015 38951.0998 89349944 czcD Metal Resistance Cadmium,Cobalt,Zinc Xanthobacter autotrophicus Py2 10471.5450 12477.8595 10956.6762 25605.2407 25320.3199 29508.1109 52321.2655 12691.7385 8349.9492 8236.9681 121556154 tphA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 3554.4924 5779.5931 146407002 cnrA Metal Resistance Cobalt,Nickel Bradyrhizobium sp. BTAi1 7104.6861 9639.8542 27185.9338 12751.0817 40837.2249 36494.8645 44764.1519 8550.3559 14737.5276 39995339 alkK Organic Remediation Others Geobacter sulfurreducens PCA 12861.3414 32421.6359 19721.8045 57468.5273 48290.3111 58575.4850 80747.2094 67825.7903 31730.5345 37491.6251 91780299 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 3876.6478 7293.1419 6989.0833 114561695 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 8964.4394 19788.2335 27288.3124 14377.8178 35910.7801 17537.8008 27688.7751 5933.1119 92392682 ppx Phosphorus Phosphorus utilization Psychrobacter cryohalolentis K5 4978.6223 81878.2936 110598124 nifH Nitrogen Nitrogen fixation Chlorobium ferrooxidans DSM 13031 5424.6728 9969.6835 58621.5753 51899.0222 2960348 amyA Carbon cycling Carbon degradataion Starch Streptomyces sp. 7447.1141 20808.0395 6892.6020 45651.8720 18401.0397 116107387 gyrB other category Phylogenetic marker Lactococcus lactis subsp. cremoris SK11 5570.3409 43353.0975 113526641 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 9043.7144 11243.3198 6308.9658 157693271 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus pumilus SAFR-032 6624.9365 28868.1649 29256.8850 27927.6168 119875513 nbaC Organic Remediation Aromatics Nitoaromatics Stenotrophomonas maltophilia R551-3 21497.4580 11164.0662 7282.5993 82118.0195 46670.2916 37340.3520 10225.6419 126353033 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Caldivirga maquilingensis IC-167 3552.4054 14718.0888 27295.4365 25216.3585 23912.1533 83643106 amyA Carbon cycling Carbon degradataion Starch Hahella chejuensis KCTC 2396 4855.4527 18393.6496 156523583 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 3961.5932 3253.7332 7999.2292 8136.6350 7119.0555 119949956 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 6194.5728 44285.4835 6534.4110 28149.0500 38334.1102 64828.6701 47289.4626 63357.4733 11804.7325 11899.5280 46307969 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6110.0652 11337.5851 4091.8444 33241.2899 5041.2219 151282291 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille 4613.2856 26549.9261 5454.2357 53766.5106 25097.8975 46333.8198 90335420 linB Organic Remediation Pesticides related compound Aurantimonas sp. SI85-9A1 9408.2766 8054.8485 29104.7166 118705303 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 4000.9104 12462.0081 118746565 nifH Nitrogen Nitrogen fixation Geobacter lovleyi SZ 6287.1848 50950964 CopA Metal Resistance Copper Leifsonia xyli subsp. xyli str. CTCB07 4018.1361 4483.6514 152030504 czcA Metal Resistance Cadmium,Cobalt,Zinc Anaeromyxobacter sp. Fw109-5 10572.2694 8929.9834 53800.7106 23691.7100 24683.2599 118436926 pimF Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 4322.9273 24035.0004 15907.6744 57084.4114 61132.2584 14674.5894 150958739 czcA Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas aeruginosa PA7 5723.8447 15624.0310 23460.9797 148245059 CopA Metal Resistance Copper Candidatus Vesicomyosocius okutanii HA 5032.9796 110632713 mer Metal Resistance Mercury Mesorhizobium sp. BNC1 11040.3566 9811.8201 3403.3412 12151.3554 15221.0090 157322510 PobA Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 5012.0800 9789.2448 26984389 endochitinase Carbon cycling Carbon degradataion Chitin Aeromonas punctata 6124.0361 9291.4738 6889.2788 15985.8687 134096397 silP Metal Resistance Silver Herminiimonas arsenicoxydans 2964.4023 5625.0030 71370965 endochitinase Carbon cycling Carbon degradataion Chitin Paracoccidioides brasiliensis 4803.9909 33232.8324 5026.8926 22544.6319 55023.8356 19052.7344 32609.2585 17603.8063 21221525 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 23459.1571 15965.5030 5134.2351 10364.9798 25796.1153 65454.2303 52442.0234 9415.8900 7905.9208 8546916 dehH Organic Remediation Chlorinated solvents Streptomyces coelicolor A3(2) 3652.0776 3396.6254 26776.8507 27361.1014 26278818 narG Nitrogen Denitrification uncultured bacterium 8885.0487 13535.9680 31691.3062 66293.8890 55628.1200 5689.9615 134291701 silC Metal Resistance Silver Burkholderia vietnamiensis G4 7250.2131 67741.3625 50651.2926 93356634 nmoA Organic Remediation Aromatics Nitoaromatics Ralstonia metallidurans CH34 5743.5318 4348.7176 144905933 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 25505.4731 126503.1005 118441.8870 119857773 ChrA Metal Resistance Chromium Pseudomonas putida W619 5134.0434 56799023 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 5146.5980 10011.8148 50288619 cellobiase Carbon cycling Carbon degradataion Cellulose Candida glabrata 5483.6682 149182592 pulA Carbon cycling Carbon degradataion Starch Bacillus sp. SG-1 5787.0049 4425.2841 78221778 cytochrome Energy process Energy process Geobacter metallireducens GS-15 4788.5054 11926.0358 9481.3548 154250811 czcA Metal Resistance Cadmium,Cobalt,Zinc Parvibaculum lavamentivorans DS-1 10589.3965 21241.2090 29684.3426 35012.2171 56179755 merT Metal Resistance Mercury Idiomarina loihiensis L2TR 35149.7975 5677.0923 10433.4048 66474611 gyrB other category Phylogenetic marker Aeromonas veronii bv. Sobria 6282.0841 3842.2511 6390.5378 9864.4154 88925625 Al Metal Resistance Aluminum Desulfotomaculum reducens MI-1 3871.3451 5798.1085 104781851 SmtA Metal Resistance Miscellaneous Pseudomonas entomophila L48 5643.4622 4315.0600 14128.3552 24076.4420 16998.0506 35289.9516 9474.5933 7221.2876 148261736 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 10260.6504 11911.0670 71736846 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas syringae pv. phaseolicola 1448A 17399.5090 6500.7287 4839.7081 13671.0760 18206.0128 152971348 ArsC Metal Resistance Arsenic Klebsiella pneumoniae subsp. pneumoniae MGH 78578 3847.1015 27351704 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 9394.1481 22874.8849 4703.6012 20197.3285 27378.3710 38465.1324 22190.4813 77820044 nirS Nitrogen Denitrification uncultured organism 9380.8337 5541.8568 20860.2430 44964.8797 37007.0181 146188529 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3611.6746 124488145 napA Nitrogen Dissimilatory N reduction uncultured bacterium 7872.0566 20692.3993 14866.7878 25847.9457 22822.0839 28565.1013 7157.1965 146343608 sox Sulphur Sulphur oxidation Bradyrhizobium sp. ORS278 6082.4495 23071.7235 22805.9048 149913902 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. AzwK-3b 9471.6408 4476.8259 10650.8555 46395.7905 41549.0302 5528.5831 9522.1367 5695.8248 72395594 mcrA Carbon cycling Methane Methane production Methanosarcina barkeri str. fusaro 5098.1595 38679.8485 16426.2461 4096595 pcaG Organic Remediation Aromatics Other aromatics Burkholderia gladioli 5055.0405 158328818 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Azorhizobium caulinodans ORS 571 3125.5979 23123608 cadBD Metal Resistance Cadmium Nostoc punctiforme PCC 73102 28264.7634 118727307 ara Carbon cycling Carbon degradataion Hemicellulose Clostridium cellulolyticum H10 5146.4221 6352.4558 18215.6792 9197.8975 127513331 Arylest Organic Remediation Aromatics Other aromatics Shewanella loihica PV-4 8581.3532 31179.4977 119376530 pimF Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 4769.2989 119225904 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 6576.6640 4865.5387 59279.0851 23094408 catB Organic Remediation Aromatics BTEX and related aromatics Rhodococcus opacus 7275.4502 6986.3682 13157.9308 148258457 CadA Metal Resistance Cadmium Bradyrhizobium sp. BTAi1 23735.8794 30072.2024 16334.3601 10493.6754 23463.5373 68257.4476 64523.5505 12725.9028 7480.0120 3367751 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces coelicolor A3(2) 15553.2173 14166.4625 6729.5637 14139.6100 55949.4789 18285.2715 43854.3369 15540.3685 9632.0892 40253074 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7462.1584 12373.7892 2181.8192 82570672 mnp Carbon cycling Carbon degradataion Lignin Ceriporiopsis rivulosa 4540.6220 5969.2379 5682.8213 147848062 ChrA Metal Resistance Chromium Synechococcus sp. WH 7803 5745.9469 10383.2660 11605.9777 13636.4777 20460.1406 12671.5691 10007.2656 91191193 ZntA Metal Resistance Zinc Vibrio alginolyticus 12G01 9852.8066 16214.4732 73849.8788 37734.4842 8331.1332 119391399 narG Nitrogen Denitrification uncultured bacterium 4766.9096 7222.8975 119698563 nifH Nitrogen Nitrogen fixation uncultured bacterium 13550.7560 2863.3864 8511.8514 21258.1005 118670769 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 5207.0633 83835803 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM 8847.2393 29617.2926 24322.1012 27526.1487 11399.7872 10140.0321 32307981 narG Nitrogen Denitrification uncultured bacterium 5503.9010 4743.6202 78367938 CopA Metal Resistance Copper Shewanella sp. PV-4 8574.8530 10283.0447 3524.8141 7878.4118 56286.8855 30379.2301 25970.5126 5414.2325 152022825 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus subsp. cytotoxis NVH 391-98 6862.2477 13179.4447 12847.2569 59602.7083 9656.0020 25073.4555 38609.4552 29436.0480 41856.7567 149143059 AmiE Organic Remediation Aromatics Other aromatics Roseovarius sp. TM1035 19158.4079 15607.3489 15825.6366 106568.5934 23569.0118 62207.3473 36855.6781 83318826 nirS Nitrogen Denitrification uncultured bacterium 4560.4131 6850.1077 16778.4870 16262.0496 19216.5533 114800512 TerC Metal Resistance Tellurium Hyphomonas neptunium ATCC 15444 8221.4078 5524.5932 21779.2479 44229.9073 37430.9322 116488839 gyrB other category Phylogenetic marker Silicibacter lacuscaerulensis 8842.5004 15466.3927 16699.1859 22073.6403 14027509 ppx Phosphorus Phosphorus utilization Mesorhizobium loti MAFF303099 6228.6142 15278.0340 116698891 nrfA Nitrogen Dissimilatory N reduction Syntrophobacter fumaroxidans MPOB 3667.9423 4314.3561 90438684 ZntA Metal Resistance Zinc Vibrio angustum S14 6882.6470 10463.4546 7063.7470 28007.5543 11941.0917 24673.4799 61660056 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 13056.8402 21121.9711 7224.0813 10821.2597 28467.5324 31199.4327 29338.2036 7264.5625 118616210 mhpB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium ulcerans Agy99 7915.7868 78388.5658 27700.8550 1326001 lip Carbon cycling Carbon degradataion Lignin Phanerochaete chrysosporium 4789.1120 6811.5939 9789.7613 10542.7802 295710 phtA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 12561.8522 13222.7072 35517.4173 26278828 narG Nitrogen Denitrification uncultured bacterium 14922.8224 10358.2374 9446.6006 8866.9032 17360.6826 10371.6431 11851.5853 7430.6036 150386242 CadA Metal Resistance Cadmium Victivallis vadensis ATCC BAA-548 13263.3316 3096.5456 6338.1242 46387.1479 32745.8648 1698444 endochitinase Carbon cycling Carbon degradataion Chitin 13296.2490 19782.4181 10460.6344 7428.7750 89042.9161 38589.2285 28295.1649 5810.8308 108762557 amyA Carbon cycling Carbon degradataion Starch Myxococcus xanthus DK 1622 5482.9118 11568.4783 31766.5100 4793.1334 83316792 nirK Nitrogen Denitrification uncultured bacterium 8283.7419 7693.2617 39092.4912 79181.5381 43504.5098 26985958 sox Sulphur Sulphur oxidation Halothiobacillus neapolitanus 6862.1126 118730375 atzB Organic Remediation Herbicides related compound Delftia acidovorans SPH-1 10384.0560 23702.5238 4112.0566 23371.7982 93332.6607 54639.7494 78066383 mdlD Organic Remediation Aromatics Other aromatics Burkholderia sp. 383 10621.5285 2855.8474 50967.5103 45664.8034 53706.8276 4857.4258 118582203 LMO Carbon cycling Carbon degradataion Others Enterobacter cowanii 11712.1398 13971.2677 7651.4402 10346.9181 42191.0286 50835.0067 2635396 nmoA Organic Remediation Aromatics Nitoaromatics Bacillus subtilis subsp. subtilis str. 168 5358.7854 119396327 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 5985.2971 19901.8346 50295905 phenol_oxidase Carbon cycling Carbon degradataion Lignin Auricularia polytricha 14271.5560 13026.3754 9919.4798 60959.7631 71252.4924 37340.7277 70731221 catB Organic Remediation Aromatics BTEX and related aromatics Pseudomonas fluorescens Pf-5 6362.0080 8807.2863 3971.2969 8082.2908 47863.2736 15210.4756 47061.8286 5514.5247 153893454 cellobiase Carbon cycling Carbon degradataion Cellulose Opitutaceae bacterium TAV2 11594.4241 18629.1459 15595.7953 16570.1864 39764.9862 54531.2765 56008.8254 10717.5638 8681.0481 5677.4592 149122188 phn Organic Remediation Herbicides related compound Methylobacterium sp. 4-46 3319.1650 8248776 TerD Metal Resistance Tellurium Streptomyces coelicolor A3(2) 6722.1829 11520.7719 11242.1641 62322.0407 30596.4436 50977.8481 7289.0382 7295.6929 89053928 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 4740.7113 9104.9608 12274.8081 21322.5880 13309.5236 16996.0814 6741.2004 157404606 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 5955.9609 8910.3504 54649960 alkB Organic Remediation Other Hydrocarbons Gordonia sp. TF6 4798.1141 5380.1231 13024.6612 109632429 nirK Nitrogen Denitrification uncultured bacterium 4302.0758 3648.7189 6451.7760 29343376 amyA Carbon cycling Carbon degradataion Starch Enterococcus faecalis V583 15231.8591 117981782 ChrA Metal Resistance Chromium Burkholderia phymatum STM815 4913.3762 7636.5844 9657.4412 50681.9391 46680.9127 120606320 CadA Metal Resistance Cadmium Acidovorax sp. JS42 4344.9577 13424093 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 12749.2229 6637.5500 7899.5310 29496.1411 34500.7154 22294641 linB Organic Remediation Pesticides related compound Thermosynechococcus elongatus BP-1 3333.6689 46578391 phenol_oxidase Carbon cycling Carbon degradataion Lignin Trametes hirsuta 5034.6343 24730.8825 154248643 pcc Carbon cycling Carbon fixation Xanthobacter autotrophicus Py2 6917.8648 9320.7433 32870.8244 8415.9636 156450801 czcA Metal Resistance Cadmium,Cobalt,Zinc Methylobacterium chloromethanicum CM4 4961.3885 4659.2202 21238927 gyrB other category Phylogenetic marker Streptosporangium violaceochromogenes 5110.2390 8372.6677 39972653 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 11466.7989 31576.1329 6868.7608 8929.0779 59478.6520 82127.6559 67837.9013 16381.8816 118424484 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3980.3774 145257564 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 7105.7531 39681.9726 16899.3122 22660.1745 145409111 CopA Metal Resistance Copper Caldicellulosiruptor saccharolyticus DSM 8903 9623.6480 6615.1374 32132.8730 79360.1909 59949.8642 6168.7633 13919.7180 17408.1466 115422867 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 3738.8216 149128779 ChrA Metal Resistance Chromium Bacteroides caccae ATCC 43185 6492.1872 15759.7360 40609.4690 83311938 ppx Phosphorus Phosphorus utilization Magnetospirillum magneticum AMB-1 4317.9807 4802.2994 41349577 narG Nitrogen Denitrification Haloferax mediterranei 3736.8384 3119.7420 4819.6794 6665.7134 16625.7693 39996839 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 4131.8754 25700.0827 11471.9361 55565.1637 15263.0860 25158.6176 8004.3611 19982.1761 37727205 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 30469.9142 18555.0903 75867.3177 80089.8508 119076.6760 130715.3889 57261.4742 41814.5539 46217.0532 145215925 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK 5293.8427 5934.6665 6761.5819 27035.3369 22267.5703 32892.7018 8085.4473 148845356 pcpB Organic Remediation Herbicides related compound Planctomyces maris DSM 8797 5418.9814 138896623 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 3085.7218 13928.0685 18326.4081 22103.4118 118703930 nmoA Organic Remediation Aromatics Nitoaromatics Sphingomonas wittichii RW1 4667.3221 6547.2457 7135.9124 8793.3475 18034328 dsrA Sulphur sulfite reductase Desulforhopalus singaporensis 17822.2187 40932.3536 4759.0663 30493.0068 30389.3243 18216.9935 54016100 linB Organic Remediation Pesticides related compound Nocardia farcinica IFM 10152 22324.7125 86917.8718 9620.8236 4234.4370 68822.1196 96009.3093 76504.7159 62512331 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 10495.2654 9151.1267 7656.8448 55855.5503 16793.7012 7887.3331 1652379 ZntA Metal Resistance Zinc Synechocystis sp. PCC 6803 10349.3136 9742.3025 6742.4973 5134.8767 6017.2677 148262172 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter uraniumreducens Rf4 4382.7777 83757059 ppx Phosphorus Phosphorus utilization Salinibacter ruber DSM 13855 5958.7378 18471.3776 8688.4855 116333349 ppx Phosphorus Phosphorus utilization Lactobacillus brevis ATCC 367 7748.6493 8813.6320 71558625 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. phaseolicola 1448A 7691.8306 26302.0481 11843.5013 56809519 nifH Nitrogen Nitrogen fixation uncultured bacterium 7535.0992 12153.6260 8913.0864 18103.2062 54180.3726 84890.1141 78651.4048 10958.4588 12367.3384 23100011 amyA Carbon cycling Carbon degradataion Starch Oceanobacillus iheyensis HTE831 6534.1120 40540.7681 22062.3606 109452464 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6064.3145 8018.5213 9280.5650 30982.0225 31460.3857 15151.4225 8595.0999 12278.2132 21221847 mdlD Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) 4395.8383 17298.9543 87675.1122 22954.9810 37646.8287 84778379 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6047.5167 5313.8965 30025.5975 48735.7646 45482.2672 32927.4707 13231.9649 118424322 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5395.7307 9166.0996 31660.0480 28278.3907 11187.6980 119855648 TerC Metal Resistance Tellurium Pseudomonas putida W619 4866.2607 27356185 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 5546.9056 4686.8964 6494.8923 49439.0081 40043.0961 6172.9963 6665.2262 116077919 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8391.1853 4976.6848 17879.9698 34276.5756 20958.2306 10048.2154 4667.5288 91200138 hao Nitrogen Nitrification Candidatus Kuenenia stuttgartiensis 5445.1001 7678.1677 12686.1233 150955610 narG Nitrogen Denitrification Klebsiella pneumoniae subsp. pneumoniae MGH 78578 6207.6134 7582.8141 11583.2978 15316.7397 11997.2334 16619.9567 5285.7100 5661.8162 88805835 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Robiginitalea biformata HTCC2501 9698.3870 11178.2718 11511.4391 67946.4832 19738.7693 5258.9442 108761575 phtA Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 9134.8067 14124.4651 16712.2002 11930.1793 86160193 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C 5195.7766 44983.5150 38349.5497 30807.6488 14276799 dsrA Sulphur sulfite reductase Desulfotomaculum geothermicum 9754.6131 54022446 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 3574.0404 116743270 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 2867.8697 145047781 ureC Nitrogen Ammonification Polynucleobacter sp. QLW-P1DMWA-1 5551.5692 24269.5316 11608.4873 44340.8650 75112.3292 52219.3260 17428.6164 91783796 atzA Organic Remediation Herbicides related compound Burkholderia xenovorans LB400 12851.8140 6614.9342 11136.0400 11745.1891 63122.7032 36852.3925 157369466 endochitinase Carbon cycling Carbon degradataion Chitin Serratia proteamaculans 568 4619.3002 14419.8231 55972.1494 26257.1322 17592.2885 57640772 CopA Metal Resistance Copper Thermococcus kodakarensis KOD1 5073.1004 7185.3512 20069.7339 69378.6851 62996.7722 67149.7935 30260.7201 9419.8924 12008.9354 39996164 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 7039.5569 13747.6038 7755.5516 12435.4904 67468.9024 52224.1205 49772.5151 29321.9050 7425.7644 18819.8451 121998730 dsrA Sulphur sulfite reductase Halorhodospira halophila SL1 7921.7531 3521.4880 54913.2339 58641.0145 44538.1218 7722.4766 78221801 cytochrome Energy process Energy process Geobacter metallireducens GS-15 3913.4349 12007.5207 12381.9902 25732.1764 70733269 ppk Phosphorus Phosphorus utilization Pseudomonas fluorescens Pf-5 3992.2748 12460.4621 9235.0666 10188.9744 13934.5395 8341.2321 5601.8288 12659200 nifH Nitrogen Nitrogen fixation Treponema sp. ZAS-9 9528.9844 149908825 ArsC Metal Resistance Arsenic Moritella sp. PE36 4765.1490 21687.3741 9631.5802 5988.3364 19503.2621 14167.5789 28057476 atzA Organic Remediation Herbicides related compound Xylella fastidiosa Temecula1 2739.9091 11022.6716 12007.0601 146313505 merP Metal Resistance Mercury Enterobacter sp. 638 5445.7883 10647.7601 4241.2678 8303.1106 12509.5597 16926.5897 17444.7768 5781.4790 6198.6158 7269.0922 120591184 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 8160.8235 9653.7176 23180.8832 146761193 fcbA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. CBS3 4821.0764 3184.4501 3849.0070 110224958 gyrB other category Phylogenetic marker Streptococcus criceti 4791.9632 11487.6014 4441.3401 13151.5739 22933.2882 20482.3917 8866.9734 11672.4136 152054 nhh Organic Remediation Aromatics Nitoaromatics 6112.1425 14631.7153 144905858 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 16480.8271 17450.7132 56767.3784 54703.6045 120594319 nagL Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 6874.5976 16120.4898 11942.0852 152985552 vanA Carbon cycling Carbon degradataion Others Pseudomonas aeruginosa PA7 5693.9691 4443.8367 116061977 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3894.0377 12151.0278 115371545 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coprinopsis cinerea okayama7#130 6577.2095 4508.0529 14042.7111 83954662 sox Sulphur Sulphur oxidation Sulfitobacter sp. NAS-14.1 5357.0160 13814.5108 10507.8189 91775712 silC Metal Resistance Silver Methylobacillus flagellatus KT 6332.7784 31777.0429 28965.9447 21319.7206 42555499 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 31085.1565 31768.3461 2964.6604 9277.7229 84515.7878 43077.2708 61208.9999 4065.3846 13898399 dsrA Sulphur sulfite reductase uncultured bacterium BMNP 5397.1660 36599.3950 60225.4851 71286.9743 48074.9201 117576546 ZntA Metal Resistance Zinc Gramella forsetii KT0803 6390.7261 3567.1015 55470.2828 33059.3231 6681676 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces thermoviolaceus 32593.6112 14347.3255 7174.2712 11330.5899 59521.8055 86232.4809 63869.5392 19774217 dsrA Sulphur sulfite reductase Desulfovibrio aespoeensis 5485.5652 9887.5071 15416.0634 14823.0128 12709.9444 119537106 czcD Metal Resistance Cadmium,Cobalt,Zinc Nocardioides sp. JS614 4820.9632 17198.9162 10539.9782 26087.8302 146275730 CopA Metal Resistance Copper Novosphingobium aromaticivorans DSM 12444 2911.4707 145571461 ChrA Metal Resistance Chromium Pseudomonas stutzeri A1501 19824.0001 47397.4049 7767.2632 19384.6162 50298.9620 65469.1901 82419.9830 9602.7936 7436.0076 154156862 czcD Metal Resistance Cadmium,Cobalt,Zinc Parvibaculum lavamentivorans DS-1 5906.0378 12110.8381 6961.8433 9787.5529 15484.9164 21183.4795 11018.0143 66850793 ArsC Metal Resistance Arsenic Aspergillus fumigatus Af293 9178.2112 20763.7960 42408.6640 33963.4762 34224.2809 7789.7555 154159165 catB Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 9407.1212 3459.2033 8735.6323 34348.8884 59690.6246 25776.5457 110816912 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 4078.2425 7802.3359 7129.9262 13128.6006 21224.3344 20183.3366 7643.8664 17912.5871 43477.1801 157915038 CopA Metal Resistance Copper Salinispora arenicola CNS-205 10040.1236 9810.5117 14675.8097 24592.8044 20312.3462 6628.0996 4304.9848 30911085 endochitinase Carbon cycling Carbon degradataion Chitin Saccharophagus degradans 2-40 29076.4824 12177.8960 78993.8173 76802.9893 68797.6681 114797464 sox Sulphur Sulphur oxidation Hyphomonas neptunium ATCC 15444 18454.6246 9671.3761 42200.3060 29944.8597 19837.8086 148499185 pcaG Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 5463.7496 115433787 ppx Phosphorus Phosphorus utilization Aspergillus terreus NIH2624 8010.8303 157285634 napA Nitrogen Dissimilatory N reduction uncultured bacterium 4655.6021 10886.3161 19230.1772 8873.8717 10076.2994 55378686 amyA Carbon cycling Carbon degradataion Starch Haloarcula marismortui ATCC 43049 3529.8830 11553.0223 5707.7343 6532.8489 22871.6166 6767.3483 4896.5480 124488195 napA Nitrogen Dissimilatory N reduction uncultured bacterium 2612.1141 88799829 PobA Organic Remediation Aromatics Aromatic carboxylic acid Reinekea sp. MED297 4129.7683 4010.2202 148511729 CadA Metal Resistance Cadmium Pseudomonas putida F1 6047.9025 13570.2326 22199.4505 22403.2159 116610559 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 5049.5057 7817.3754 14161.6082 11387.5373 18882.3880 8016.8886 124113519 amyA Carbon cycling Carbon degradataion Starch Vibrio cholerae 1587 10515.4649 16389.2240 3743.7985 42667.1484 32645.9028 39254.5939 5647.4969 115365761 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 4623.2558 10329.6820 12390.1605 25025.6502 10677.1099 28295.4456 16193.6231 19666.5176 85825672 sox Sulphur Sulphur oxidation Roseobacter sp. MED193 6452.4389 37726837 dsrA Sulphur sulfite reductase uncultured prokaryote 13763.3244 28794.9195 7613.3023 27142.1644 61014.6863 45405.3542 57185.6204 20070.8579 22165.6676 39933539 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 4465.0232 28296.8938 7860.4843 149276799 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pedobacter sp. BAL39 2574.0105 30013.3963 25920.1965 20968.0358 113473784 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. KA1 4419.4434 7953.1605 145304916 pulA Carbon cycling Carbon degradataion Starch Salinispora tropica CNB-440 28927.5203 4480.2969 5528.9954 150423033 exochitinase Carbon cycling Carbon degradataion Chitin Vibrio cholerae AM-19226 3517.4331 7981.1262 4789.3461 12206.0318 148254095 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 22256.6981 117585.8269 3102.1014 69103.9517 101059.8669 56518.3972 78172107 dsrA Sulphur sulfite reductase Chlorobium chlorochromatii CaD3 60625.0599 148715.8446 3197.8539 3831.1587 92941.1190 32562914 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus sp. JF8 7783.3876 7477.6125 34139.6396 28378213 narG Nitrogen Denitrification Lactobacillus plantarum WCFS1 4501.3673 3700.1143 5417.0805 5277.1718 8909.9163 1223924 endochitinase Carbon cycling Carbon degradataion Chitin 9165.7742 7444.7783 22405.8400 31017.5965 26814.1392 116804538 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 4121.7356 114799243 ppk Phosphorus Phosphorus utilization Hyphomonas neptunium ATCC 15444 6192.4565 11955.9433 9129.9378 32686.7968 41279.6975 3378406 mdlD Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans 11916.5159 57016.6557 41840.2298 119458441 mauAB Organic Remediation Herbicides related compound marine gamma proteobacterium HTCC2080 3549.7759 109898799 ArsC Metal Resistance Arsenic Pseudoalteromonas atlantica T6c 4742.1010 13795.8341 12866.3605 39650121 pcc Carbon cycling Carbon fixation Rhodopseudomonas palustris CGA009 6644.2461 59671.0326 20223.7893 37791157 phenol_oxidase Carbon cycling Carbon degradataion Lignin Volvariella volvacea 10977.3794 9717.7385 5156.7194 13319.6215 26686.7930 25070.0244 4583.3399 5968.2989 28852351 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 12078.1899 10004.8620 21769.3478 147830147 CadA Metal Resistance Cadmium Clavibacter michiganensis subsp. michiganensis NCPPB 382 5772.3182 4826.7308 73749251 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 5663.2205 3640.5419 91228309 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Vibrio alginolyticus 12G01 3136.3019 23885.6921 119865868 phn Organic Remediation Herbicides related compound Psychromonas ingrahamii 37 2911.6566 58261698 phenol_oxidase Carbon cycling Carbon degradataion Lignin Cryptococcus neoformans var. neoformans JEC21 13919.4238 28187.7441 4050.8431 40344.4635 69030.3470 43012.3746 6676.1698 118424403 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 60953.0268 167788.0882 46519969 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7862.4861 15162.1934 16531.8406 41457.3881 44652.0438 39943108 czcD Metal Resistance Cadmium,Cobalt,Zinc Magnaporthe grisea 70-15 11708.0063 7715.4889 10630.2321 46728.9753 36433.2979 4661.3444 10410.4723 145241524 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus niger 5409.3229 17716.3495 9322.7834 10039349 gyrB other category Phylogenetic marker Tenacibaculum mesophilum 6492.1394 10900.3798 33992.0770 26149.5870 29492.2053 20521522 arsB Metal Resistance Arsenic Salmonella typhimurium 3744.3132 6073.6748 7504.7262 6377.9281 28870032 cytochrome Energy process Energy process Pseudomonas syringae pv. tomato str. DC3000 3725.9338 117989544 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN 6227.1170 6382.5992 10943.2951 24460.1790 44836.8380 42712.2406 14118.0145 18034301 dsrA Sulphur sulfite reductase Desulfovibrio fructosovorans 21642.8530 7459.1123 48105.9300 55503.8006 32040.3505 8753.1262 10711.8824 144905886 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 41208.9638 168264.7411 60383.6988 8468531 glucoamylase Carbon cycling Carbon degradataion Starch Lentinula edodes 7463.0855 6505.7905 16794.0923 27507.0275 20678.4136 148342406 nifH Nitrogen Nitrogen fixation uncultured bacterium 11528.0954 12703.5696 4175.8568 9409.4851 20749.4781 15164.5269 19486.3907 960298 endochitinase Carbon cycling Carbon degradataion Chitin Aeromonas sp. 10S-24 12088.8942 26952.0418 5752.6849 14774.9597 63382.9636 54244.5240 80517.5158 8353.5285 12106.9457 144905833 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 26795.3483 32434.6176 44681.6862 60344.9070 62332.5918 134094777 CopA Metal Resistance Copper Herminiimonas arsenicoxydans 4565.4706 150670 gdh Nitrogen Ammonification 7582.5061 16269.0869 25465.3032 55740.1508 32320.8851 7798.7437 110624470 gyrB other category Phylogenetic marker Shewanella sp. T147 3255.7024 21040.2631 109455731 vanA Carbon cycling Carbon degradataion Others Roseobacter denitrificans OCh 114 5211.9683 6417.3015 13146.0598 5360.0105 5477.7786 126705741 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 4605.4312 11935.8541 19505.4595 118702001 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 4582.9859 5879.2915 14531.3857 28347.4457 69623.4550 83623.3707 12051.0513 22799.0244 76882658 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrosococcus oceani ATCC 19707 10517.0573 10373.0260 12238.8792 22763.1071 21276.4489 17822.5848 14004.7616 10431.6350 13748.3862 145571106 nifH Nitrogen Nitrogen fixation Pseudomonas stutzeri A1501 5351.7972 13764.0711 27610.4161 18208.5011 73539106 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 4415.8485 12637.1687 40786.5556 27197.2161 33334341 nifH Nitrogen Nitrogen fixation Leptospirillum ferrooxidans 6622.2311 5839.2633 9913.6797 27342.2113 35537.3768 55096.6413 8813.9163 8849.8678 15807213 TerZ Metal Resistance Tellurium Deinococcus radiodurans R1 5106.4842 110287061 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 6752.8717 149828 cellobiase Carbon cycling Carbon degradataion Cellulose 10042.0631 25314.3407 21111178 linB Organic Remediation Pesticides related compound Xanthomonas campestris pv. campestris str. ATCC 33913 7587.5072 26129.2660 10632.8644 8744.7729 14755.7691 11345.1787 1575611 ureC Nitrogen Ammonification Morganella morganii 4923.4015 6216.1997 8912.9358 9107.1055 158329784 ArsC Metal Resistance Arsenic Azorhizobium caulinodans ORS 571 6114.5480 32885.8467 12556.4398 11298.0595 12744271 nosZ Nitrogen Denitrification uncultured temperate forest soil bacterium CZ1441 8959.5059 3873.8566 6446.3115 8474.3488 665930 phenol_oxidase Carbon cycling Carbon degradataion Lignin 8145.5575 11460.7125 6156.2293 12715.4089 47773.0308 49370.6507 69555.0776 31747160 endoglucanase Carbon cycling Carbon degradataion Cellulose Hypocrea jecorina 8419.5919 19850.6583 24821.8215 39428.6572 157406207 CopA Metal Resistance Copper Methylobacterium populi BJ001 7969.4284 6894.5121 8101.6138 44845.6508 40797.4353 44662914 TerZ Metal Resistance Tellurium symbiont bacterium of Paederus fuscipes 3688.4715 71143452 endochitinase Carbon cycling Carbon degradataion Chitin Trichoderma atroviride 8637.8177 42267.8927 50842592 amyA Carbon cycling Carbon degradataion Starch Propionibacterium acnes KPA171202 6031.1524 12788.8300 18309.0475 24270.6189 1914799 cellobiase Carbon cycling Carbon degradataion Cellulose Thermococcus sp. 3695.5662 3621.3571 5929.1344 89243225 exoglucanase Carbon cycling Carbon degradataion Cellulose Myxobacter sp. AL-1 7688.0743 5343.8832 15826.5450 27325.4472 32278.0128 8907.1203 15623214 linB Organic Remediation Pesticides related compound Sulfolobus tokodaii str. 7 7662.1439 6828.0625 40627.4094 42693.4701 121705728 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus clavatus NRRL 1 12333.9992 14567.3922 31298.3276 29448.1966 22215.0615 49180.4617 46401.2501 12608.9466 6896.7198 9210.4404 46580503 CODH Carbon cycling Carbon fixation Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 7489.9846 28588.8272 35898.3797 50841277 ZntA Metal Resistance Zinc Propionibacterium acnes KPA171202 7334.2460 11957.4949 8838.3087 50920.5200 33450.3357 18025.7433 7351.7610 34330308 ChrA Metal Resistance Chromium Chromobacterium violaceum ATCC 12472 6786.7231 11128.7056 3071.1645 8300.4245 28793.0266 30736.1548 38353.8510 4435.5401 5967.2467 78694144 gyrB other category Phylogenetic marker Bradyrhizobium sp. BTAi1 6831.2498 5882.1576 6741.6121 20386.7957 36043.1137 11870.4567 8674.9135 9904.2649 83647422 alkB Organic Remediation Other Hydrocarbons Hahella chejuensis KCTC 2396 5808.3192 91687593 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia xenovorans LB400 9828.4722 13811.1107 4222.8588 29965.8355 54456.6708 59703.0240 55497.1506 12617.6938 9804.6433 33441.9664 38199526 pcc Carbon cycling Carbon fixation Corynebacterium diphtheriae 16190.2572 26744.2167 80771.9303 55786.1024 63153.9147 148530047 silC Metal Resistance Silver Gluconacetobacter diazotrophicus PAL5 4331.7010 6410.9338 6181.2475 13296.2740 16261.3838 4982345 FTHFS Carbon cycling Acetogenesis Thermotoga maritima MSB8 3307.7639 8746.3536 109702465 proO Organic Remediation Aromatics Other aromatics Pseudoalteromonas atlantica T6c 3781.8601 14571.2968 34487.6821 20732.5593 24865.1365 145254324 phytase Phosphorus Phosphorus utilization Aspergillus niger 7126.2753 8772.0814 18373.7698 158321187 CopA Metal Resistance Copper Alkaliphilus oremlandii OhILAs 4253.7451 10045.7654 3133.3705 111150085 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 4754.8001 5866.5564 7355.2267 8130.9085 13807.6218 6874.5697 9567.0045 83724317 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia solanacearum UW551 5600.3370 78102023 nifH Nitrogen Nitrogen fixation uncultured bacterium 5812.3613 3585.0837 6969.4672 50734.5185 26917.0176 93453002 CopA Metal Resistance Copper delta proteobacterium MLMS-1 6928.1342 4034.7635 7507.1915 26310.2565 29960.8711 91698183 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 16110.6025 3231.7746 7250.1987 55553.7336 24283.4594 43235.0808 6651.3047 5606.9639 144905892 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 50985.8757 147729.8140 101273.3978 91226729 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio alginolyticus 12G01 4445.7569 21488.8790 157963794 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 4797.9952 30812.9175 4047.5345 156934759 ZitB Metal Resistance Zinc Enterobacter sakazakii ATCC BAA-894 5696.5811 10586.0906 15304.7642 22562.2507 17828.3546 30668.9375 15576.2591 9754.0956 67523485 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 5158.2447 11608.7136 32308029 narG Nitrogen Denitrification uncultured bacterium 6338.4828 4456.1382 29368.0366 18577.7941 7336.8405 145232927 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus niger 11478.0481 28931.9423 19510.8509 18718.3284 58654.3283 55920.7731 65507.4270 21536.9172 10606.2453 12228.1195 24375963 cytochrome Energy process Energy process Shewanella oneidensis MR-1 4063.0160 10015.0950 25279.7808 14211.7629 22675.2552 146339371 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 4831.3907 9570.1223 12119.1563 148628249 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 11003.1128 8404.5364 21984.0779 76379.3118 120594344 phdJ Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 6735.9004 24946.6838 17238.5227 21042.8880 146190611 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 4109.9492 8190.8368 3171.3859 12667572 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr615-1 9549.1911 54156.7159 19563.8854 48356.9734 58583836 linB Organic Remediation Pesticides related compound Xanthomonas oryzae pv. oryzae KACC10331 5279.8459 56799065 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 14143.5675 11973.8149 47615.7902 28264.0936 110679646 ArsC Metal Resistance Arsenic Roseobacter denitrificans OCh 114 3573.2245 116013326 nirS Nitrogen Denitrification uncultured bacterium 7333.7497 10627.7380 5824.3558 5858.8123 116624095 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 5574.4670 4360.1993 11954.0842 9089.6454 83840341 trzN Organic Remediation Herbicides related compound Sulfitobacter sp. NAS-14.1 4019.1678 113933512 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 5192.7320 9081.6521 113207314 phenol_oxidase Carbon cycling Carbon degradataion Lignin Phlebia radiata 5845.2219 16580.6014 11224.6591 71002412 pheA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 4812.8072 68263309 CopA Metal Resistance Copper Corynebacterium jeikeium K411 5392.3117 90441253 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Vibrio angustum S14 8470.6076 13259.7715 27011.3524 115351481 endochitinase Carbon cycling Carbon degradataion Chitin Burkholderia cepacia AMMD 6194.2541 7806.2867 45296.0833 20818.5548 117924466 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Magnetococcus sp. MC-1 4028.8549 45722.9662 67977.2324 86605.7478 65329.2307 6305.0078 158514476 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 45612.0820 139130.5809 101836.1682 4836660 rubisco Carbon cycling Carbon fixation Acidithiobacillus ferrooxidans 4958.3679 5506.3242 4852.6295 12382.7534 18714.2025 3378405 bphB Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans 9494.3876 13188.7537 3466.2614 14175.4887 30667.3392 26554.7324 44261.3519 26418.4245 17023.7623 2765117 merP Metal Resistance Mercury Thiobacillus sp. 11683.8103 87594.6046 54249.8937 153796047 ChrA Metal Resistance Chromium Ruminococcus gnavus ATCC 29149 6877.9651 4425.0602 6793.2194 10599.3675 14851.2397 14712.4655 6336.8251 113525909 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 3431.9043 21097.0084 16376.1906 1082009 nitA Organic Remediation Aromatics Other aromatics 5153.1322 70988651 BADH Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 3929.6926 216852 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas chlororaphis 5892.6315 12734.2330 5572.5414 6590.8661 73617.7594 19366.6946 38671.8703 7509.6483 118582207 LMO Carbon cycling Carbon degradataion Others Enterobacter cowanii 6039.8531 4895.8336 49621.4157 13564.4320 84389943 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 7418.4736 4556.0638 145234174 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 7658.1243 14933.2046 21956.4312 74144.5195 41877.5101 126315942 atzC Organic Remediation Herbicides related compound Pseudomonas putida GB-1 11829.1697 12966.6626 79176.3717 46058.3762 119473262 czcD Metal Resistance Cadmium,Cobalt,Zinc Neosartorya fischeri NRRL 181 2828.6037 67541054 cellobiase Carbon cycling Carbon degradataion Cellulose Aspergillus nidulans FGSC A4 4171.9158 19156.4620 25183.0013 6136053 mdlD Organic Remediation Aromatics Other aromatics Sphingomonas chungbukensis 6688.9774 22425.6876 8690.4477 8861.0144 25460.6473 27342.0194 60038.5674 145322504 czcD Metal Resistance Cadmium,Cobalt,Zinc Novosphingobium aromaticivorans DSM 12444 3440.8542 84664340 phtA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 11307.4248 8556.9787 4517.9864 26539.3900 14813.0938 17647.9234 517431 mcrA Carbon cycling Methane Methane production 16431.4924 45859.2342 6099.2290 26696.6118 86491.3157 92789.7711 75719.4136 13358.7860 11704.8716 12205.0768 83950081 FTHFS Carbon cycling Acetogenesis Roseovarius nubinhibens ISM 8418.8213 2973.9113 37123.3536 39123.5630 44711.1146 86279917 phn Organic Remediation Herbicides related compound Rhizobium etli CFN 42 4407.3996 1655475 isopullulanase Carbon cycling Carbon degradataion Starch Arthrobacter globiformis 9825.0649 28377.7522 32900.4779 26839.6936 58154.1668 54120.2787 71051.9537 15271.8196 72117264 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 12221.7681 2934.4821 25159.8629 20948.5663 39651590 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 3850.1705 5210.8056 6483.0175 126179296 CadA Metal Resistance Cadmium Methanoculleus marisnigri JR1 3268.8947 86569222 amyA Carbon cycling Carbon degradataion Starch Frankia sp. CcI3 9913.3973 4174.2112 24845.9670 23242.9303 31831.9480 133739064 ArsC Metal Resistance Arsenic Herminiimonas arsenicoxydans 5479.1214 18515.0322 9853.4732 14262.6061 151574799 ChrA Metal Resistance Chromium Ralstonia pickettii 12D 3547.5720 10455.5149 9094.6390 12495.1805 157846853 hydrogenase Energy process Energy process Shewanella pealeana ATCC 700345 16515.1055 11186.4697 5280.0857 27671.4895 26795.8912 50086352 SilA Metal Resistance Silver Acinetobacter sp. ADP1 6046.6992 12107.9511 8953.8942 23738.6400 24236.2385 5702379 TerZ Metal Resistance Tellurium Proteus mirabilis 4924.5784 3487.8789 116098697 ppk Phosphorus Phosphorus utilization Lactobacillus brevis ATCC 367 10365.8551 6808.7632 15609.0429 56088.3790 48771.8956 52211.0732 11368.1873 13465.7435 74053812 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 3166.0722 3401.8711 5920.3445 13092512 bclA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium leprae 4960.0625 29238.8865 119458982 ArsC Metal Resistance Arsenic marine gamma proteobacterium HTCC2080 3185.2670 50727102 endochitinase Carbon cycling Carbon degradataion Chitin Microbulbifer hydrolyticus 26937.5589 3583.8059 59012.3988 45361.6348 83772956 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus oryzae 7925.3481 54297174 scnABC Organic Remediation Others Legionella pneumophila str. Paris 13193.2618 8987.5074 2582.9744 23616.3650 36656.9028 8578.4828 10567.0904 78518386 CODH Carbon cycling Carbon fixation Bradyrhizobium sp. BTAi1 5856.2475 19862.0811 23678.0240 39997094 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 4369.0859 3922.0739 5119.5193 12173.6327 37731823 ureC Nitrogen Ammonification Nitrosomonas cryotolerans 4502.7148 7538.7662 116063135 alkK Organic Remediation Others Aeropyrum pernix K1 3997.4232 19417.2640 12667197 cmuA Organic Remediation Chlorinated solvents Hyphomicrobium chloromethanicum 3820.5810 121553331 ureC Nitrogen Ammonification Verminephrobacter eiseniae EF01-2 10146.7354 12136.5258 49835.0467 27704.8590 29242.1275 13329.4258 14389169 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8712.3440 59206.0310 66810.2737 31196.3750 89092883 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanospirillum sp. MED92 5106.2421 6605.4863 15646.8612 16642.4671 9149.5480 21225707 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 6721.6698 145229305 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus niger 4725.2063 8324.1335 10029.3579 16053.3955 13717.2729 15740.7845 13012.4809 6696.3711 12008.8917 149120187 sox Sulphur Sulphur oxidation Methylobacterium sp. 4-46 2708.5249 4868.8018 9873.3655 7416.9949 39984704 hydrogenase Energy process Energy process Geobacter sulfurreducens PCA 4284.4010 119391421 narG Nitrogen Denitrification uncultured bacterium 4762.7085 6015.9514 13207.4688 13393.8334 145253378 alkJ Organic Remediation Other Hydrocarbons Aspergillus niger 3044.9570 294365 PobA Organic Remediation Aromatics Aromatic carboxylic acid 6784.0454 23509.2431 4475.4402 17092.6638 50486.8595 28659.3637 8697.0771 152997139 pheA Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 8375.9750 12778.0911 12509.7478 148501120 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 7975.0912 13082.6095 154304204 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Botryotinia fuckeliana B05.10 13842.1084 113882.1552 44114.0626 33040.4462 79961.3410 61712.6569 78896.2029 72157.4553 52367.4024 39946.2385 23129429 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 4324.3040 7627.4829 35094.0479 36446.3557 32552.3125 126658952 CopA Metal Resistance Copper Cyanothece sp. CCY0110 3806.5595 56312785 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 3810.4156 62421706 nifH Nitrogen Nitrogen fixation Anabaena cylindrica 6443.4703 3188.3937 17023.7177 14148.6734 854338 pectinase Carbon cycling Carbon degradataion Pectin Didymella pinodes 6704.6212 4681.7901 47689.1827 34761.5443 27151.3111 10593.0452 28901422 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio parahaemolyticus RIMD 2210633 22985.2466 2925.9274 29125948 nosZ Nitrogen Denitrification uncultured soil bacterium 4660.4643 4526.9737 8470.5419 15425.3295 18001.9437 16486.9624 39996127 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 5114.9954 15773.5747 6391.6593 8528.2885 33524.1547 19767.1493 20649.8260 8550.5030 145047395 sox Sulphur Sulphur oxidation Polynucleobacter sp. QLW-P1DMWA-1 10740.3382 10966.8006 125714545 ureC Nitrogen Ammonification Clostridium thermocellum ATCC 27405 4646.8647 8670.9873 35828.7709 49500.8300 7724.1183 118170007 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 6607.1295 56708836 PobA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 3412.5543 5163.8294 9993.8597 27292.9313 13680.4360 12721.3331 158305562 nagG Organic Remediation Aromatics Aromatic carboxylic acid Acaryochloris marina MBIC11017 8122.7307 47251.3901 13778.1047 26454332 FTHFS Carbon cycling Acetogenesis Mycoplasma penetrans HF-2 7280.9099 39246.7463 7264.8584 39237.8827 62445.8679 56018.6546 87025.3505 46769.2074 21582.7349 31385.0790 116743231 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4345.3560 9864060 chnB Organic Remediation Other Hydrocarbons Brevibacterium sp. HCU 5529.5604 7508.2699 36778.2478 17398.9070 18638.9772 90196203 CopA Metal Resistance Copper Mycobacterium vanbaalenii PYR-1 6020.1461 4241.0274 16543.8426 19008.0330 29033.2189 18516.7007 4497.4498 116186064 pcaG Organic Remediation Aromatics Other aromatics Vibrio sp. Ex25 8989.9032 15540.3082 14128.3067 18957.7960 12505.5331 8715.9997 16921.8916 156450784 CadA Metal Resistance Cadmium Methylobacterium chloromethanicum CM4 8518.4107 14108.2936 4016.1901 4771.8455 22965.9932 52496.0779 56564.4111 7705.6236 118053598 czcA Metal Resistance Cadmium,Cobalt,Zinc Comamonas testosteroni KF-1 4028.5745 15057.7815 22171.7592 46152.3628 17430780 silC Metal Resistance Silver Ralstonia solanacearum 4694.1135 149186178 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. SD-21 7883.8700 17384.6709 23735.5218 12451.7573 148254144 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 8992.2043 5946.5396 116621213 ara Carbon cycling Carbon degradataion Hemicellulose Solibacter usitatus Ellin6076 13690.8584 21293.3477 62647.0537 8198.1042 123440611 CopA Metal Resistance Copper Yersinia enterocolitica subsp. enterocolitica 8081 3833.9301 18181972 dsrB Sulphur sulfite reductase Thermodesulfobium narugense 5435.5540 6621.8144 13287.2594 95110855 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 7126.5429 12669.8996 8188.7936 10383.3499 83316958 nirK Nitrogen Denitrification uncultured bacterium 4606.4984 11517.4442 21496.2121 148501505 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 3418.5399 9395.0367 13464.5037 4053.0372 116694540 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 5859.4930 84695870 ChrA Metal Resistance Chromium Polaromonas naphthalenivorans CJ2 4780.6550 4133.9127 6424.7891 16169.1534 26362.2650 6780.2804 109457400 nasA Nitrogen Assimilatory N reduction Roseobacter denitrificans OCh 114 10725.5596 10597.7440 67864.3213 83815612 pcc Carbon cycling Carbon fixation Salinibacter ruber DSM 13855 15804.3020 34015.7326 21438.6385 89664.0391 131281.7976 122026.9446 72775.3089 100869.7950 122572.7459 79253.7448 5616325 lip Carbon cycling Carbon degradataion Lignin Ceriporiopsis subvermispora 4813.5508 6081.5212 12577.5053 19463.3904 13225.6322 18670.6090 158523836 dsrA Sulphur sulfite reductase uncultured bacterium 3717.9345 91683003 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 5541.2230 11083.8544 77743212 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris BisA53 8304.3166 14697.3669 13578.3019 13735.6751 116205994 phenol_oxidase Carbon cycling Carbon degradataion Lignin Chaetomium globosum CBS 148.51 10887.0957 23340.1299 13929.9863 25499.1276 66334.7437 64591.5216 69265.5781 10008.4297 11263.0151 12368.7283 157373357 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 4746.3495 68264158 xylC Organic Remediation Aromatics BTEX and related aromatics Corynebacterium jeikeium K411 6202.7558 25429.9282 78694652 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 6041.3728 4112.1484 15891.9717 7951.7079 3983.1056 149359165 phdCI Organic Remediation Aromatics Polycyclic aromatics Marinobacter algicola DG893 4719.7940 84703871 alkB Organic Remediation Other Hydrocarbons Parvularcula bermudensis HTCC2503 6405.0732 3542.3108 10810.3838 21983.5211 4378.7572 115423799 ophC Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 4161.7993 11766.9228 7607.7757 148253609 atzA Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 17364.4112 32798.4209 5905.6757 56943.4025 61765.7090 57449.6276 15787975 dsrA Sulphur sulfite reductase Desulfitobacterium dehalogenans 34533.8823 134555.0415 94550506 pcc Carbon cycling Carbon fixation Acidobacteria bacterium Ellin345 9159.1374 5961.2881 10627.2520 14832.3313 31490.7710 40627.0092 6047.6107 88936823 Apc Organic Remediation Aromatics BTEX and related aromatics Geobacter uraniumreducens Rf4 7614.4228 11950.9845 149902794 CopA Metal Resistance Copper Clostridium beijerinckii NCIMB 8052 42730.9402 28949.7627 29342.0380 42978.1265 65598.7235 62209.9704 31762.2796 2995415 mer Metal Resistance Mercury Bacillus cereus 9731.9351 6316.1330 18077.1364 10251.7901 76057005 narG Nitrogen Denitrification uncultured bacterium 11926.5238 3286.8255 3917.8122 23792.5572 110287409 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 101461.5500 90245.4008 56133.9293 157404697 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 9987.2531 29519.2441 13939.8474 7893.6585 8580.0229 139003695 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 10636.0553 19608.7288 18802.1175 17828.3733 17761.0029 23505.9095 93354183 dehH109 Organic Remediation Chlorinated solvents Ralstonia metallidurans CH34 6243.3342 5106.5950 14381.8662 32132.0624 9224.6419 4481.7045 145622043 czcD Metal Resistance Cadmium,Cobalt,Zinc Petrotoga mobilis SJ95 15222.6498 7192.4526 20375.8611 80106.2551 60605.0504 39935214 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 10163.8291 16436.8780 15458.5130 13191.2872 109699005 mer Metal Resistance Mercury Pseudoalteromonas atlantica T6c 11478.6894 3382.7237 10290.5061 34790.1882 13445202 cellobiase Carbon cycling Carbon degradataion Cellulose Piromyces sp. E2 6701.1874 22157.6024 39324.2981 5042259 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 8280.7851 3991.6619 16990.5101 11519.2170 19325.3135 10277.6429 12494.6159 158523640 dsrA Sulphur sulfite reductase uncultured bacterium 14289.1477 4291.1159 13111.2376 15063.6436 158138777 napA Nitrogen Dissimilatory N reduction uncultured bacterium 7795.5915 32172.2643 46108938 cellobiase Carbon cycling Carbon degradataion Cellulose Gibberella zeae PH-1 7943.8959 17054.2369 9306.8955 149360142 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 16102.8262 25353.3170 80436.4763 49347.8037 14477.4586 118618393 amyA Carbon cycling Carbon degradataion Starch Mycobacterium ulcerans Agy99 15455.0815 29816.4182 35979.0980 44181.2437 119898248 xylF Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 6060.0148 7531.8748 74038394 nirS Nitrogen Denitrification uncultured bacterium 5780.1042 126105533 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 8135.8918 3842.3824 29652532 narG Nitrogen Denitrification uncultured bacterium 17997.9623 5619.8942 8623.3926 19582.2204 44523.3198 29041.5386 8676.5823 13092857 pcc Carbon cycling Carbon fixation Mycobacterium leprae 10703.3755 4582.5511 25075.2962 20815.3299 32290.1192 54025551 linB Organic Remediation Pesticides related compound Nocardia farcinica IFM 10152 99710.9221 15477.7974 102105.2307 65112.3267 110334954 CopA Metal Resistance Copper Acidovorax sp. JS42 11844.4333 30162.6082 19912133 gyrB other category Phylogenetic marker Flavobacterium ferrugineum 9886.6459 7166.9344 17999.7448 15598.3986 5391.6396 109646667 ppx Phosphorus Phosphorus utilization Desulfitobacterium hafniense DCB-2 24058.8730 11482.0146 70096.4044 22635.9538 47941.6006 38352.7641 19428.2401 24023.9358 84353693 czcD Metal Resistance Cadmium,Cobalt,Zinc Burkholderia cenocepacia PC184 12710.5382 19547.2602 8556.3813 28393.5166 4173.5359 49036626 nifH Nitrogen Nitrogen fixation uncultured bacterium 18431.1714 7018.0516 16266.8267 9498.0043 38805.2716 157322506 pcaG Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 10476.3918 4028021 dsrB Sulphur sulfite reductase Desulfotomaculum thermocisternum 6879.0359 21916.0170 34998.1670 118424355 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 23938.1501 37014.9987 74114.3712 62738.1896 124111041 tutFDG Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 10077.9204 11921.8103 17522.5304 16205.9593 34392447 glucoamylase Carbon cycling Carbon degradataion Starch Penicillium chrysogenum 20097.5920 6748.6058 20501.2872 72643.5986 76328.8196 56350.1083 7200.0734 154758547 dsrA Sulphur sulfite reductase uncultured bacterium 13370.7175 25810.8563 28885.2253 17134720 ZntA Metal Resistance Zinc Nostoc sp. PCC 7120 9768.0708 3605.9994 6735.8787 53817.4290 11776.6434 6685.8143 9050.7047 148272257 arsB Metal Resistance Arsenic Clavibacter michiganensis subsp. michiganensis NCPPB 382 17277.6827 80824.6416 20522.6575 19703648 nifH Nitrogen Nitrogen fixation Fusobacterium nucleatum subsp. nucleatum ATCC 25586 9005.5370 5457.0635 15975.7964 10120.9482 11721.1290 35949.7617 51670.6550 15971.0135 35857.7879 116205115 pheA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 35237.1117 2576.6313 21399.1263 11563.3616 27091.3772 90201084 ZntA Metal Resistance Zinc Mycobacterium vanbaalenii PYR-1 8999.7006 9054.5685 27540.7916 89091458 gyrB other category Phylogenetic marker Lactobacillus reuteri JCM 1112 14174.1062 5451.9760 55875.4605 31729.4257 54574.6026 113898802 endochitinase Carbon cycling Carbon degradataion Chitin Herpetosiphon aurantiacus ATCC 23779 10223.7519 44260.2112 109452434 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8727.2175 8371.4897 29236.4822 18458.3575 58846.6085 56707.9893 6253.6197 10714.3254 139478569 mer Metal Resistance Mercury uncultured soil bacterium 12783.5117 33115.4402 3346.7201 15621738 catechol_B Organic Remediation Aromatics Other aromatics Sulfolobus tokodaii str. 7 8998.2620 38301.9853 10896.1191 14569.5154 89512810 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 24613.9816 21265.4181 50415.9859 63390.5092 44899.0800 68200.7437 42250.6424 59745.6428 86369.2764 91202276 hzo Nitrogen Anammox Candidatus Kuenenia stuttgartiensis 12274.5672 17507.9918 42344.9855 6406.7408 8880.3470 23466089 pcc Carbon cycling Carbon fixation Bifidobacterium longum NCC2705 11472.6761 15869.6877 18335.6776 35747.9651 20142087 dsrA Sulphur sulfite reductase uncultured bacterium 11746.9063 12919.7221 148474776 napA Nitrogen Dissimilatory N reduction uncultured bacterium 13900.4361 18113.9381 8057.3140 28234.8302 11994.1431 16859.8952 121715614 BADH Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 16416.4001 11763.9388 4521.7609 47817.3258 49602.5194 4538.7394 39982228 nrfA Nitrogen Dissimilatory N reduction Geobacter sulfurreducens PCA 16896.6246 37083.3060 10509.9852 9179.5912 16272510 gyrB other category Phylogenetic marker Haemophilus influenzae Rd KW20 13653.2670 12721.9841 95833.9891 26422.3170 58039.9911 7206.6906 41348.3363 153891498 CadA Metal Resistance Cadmium Opitutaceae bacterium TAV2 36216.5635 25592.5013 8825.5506 74157.6278 31375.1863 66987.8842 14054.1734 10197.3122 56809439 nifH Nitrogen Nitrogen fixation uncultured bacterium 10813.5840 16211.6566 26630.9104 4404.0718 157962247 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 13707.6615 6587.4352 7754.1934 26793.4980 37008.5431 54027155 ppx Phosphorus Phosphorus utilization Nocardia farcinica IFM 10152 34130.5593 71629.7069 48042.0178 8586.7830 11640.7096 67903538 pheA Organic Remediation Aromatics Other aromatics Aspergillus nidulans FGSC A4 10540.9211 42146.9762 47704.7613 3243167 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingomonas sp. CB3 31571.6449 4408.4254 3828.6757 57292.1298 34845.5609 27468.0497 156869730 ara Carbon cycling Carbon degradataion Hemicellulose Clostridium leptum DSM 753 9928.9700 10334.0996 6036.6704 13815814 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 13378.6369 6678.2733 10608.7083 9304.2031 2437819 exoglucanase Carbon cycling Carbon degradataion Cellulose Anaerocellum thermophilum 18920.6199 7308.3545 19146.3072 21505.9303 19460.8996 9404.9262 119391415 narG Nitrogen Denitrification uncultured bacterium 8722.6187 7188.0680 12365.2170 11300.9974 15691.0833 46580730 merP Metal Resistance Mercury Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 9736.4507 6276.4258 20778.4251 6996.7543 150961434 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas aeruginosa PA7 96978.7014 54240.5299 126662660 TerC Metal Resistance Tellurium Flavobacteria bacterium BAL38 13155.8911 4459.1255 16617.9872 48164.5641 10339.9807 18984.6085 84517014 pimF Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 8542.6776 11728.6574 8307.3533 35863.6644 17792.9912 17942392 pcpE Organic Remediation Herbicides related compound Burkholderia cepacia 10794.8354 17302.6165 22902.9070 39925.8374 9193.5179 12356.2339 10561.8845 13358814 gyrB other category Phylogenetic marker Chitinophaga pinensis 15531.7211 26485.8338 1353678 CopA Metal Resistance Copper 6662.7445 6368.0110 8753.1923 118668313 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 7624.7928 16601.2924 16546.7473 25211.5230 62390046 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum ATCC 13032 15747.6827 5716.6721 6529.3764 12721.8370 27490.7339 7755.0132 15551.5230 88687735 mnp Carbon cycling Carbon degradataion Lignin Spongipellis sp. FERM P-18171 10250.6270 10833.3137 58447.5517 27875.4560 34297.6725 157679411 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9936.0395 24594.9304 92910775 phdG Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 11978.0241 2386.8731 15291.8033 17775.5395 26850.9822 24163.5658 11937.9637 158523742 dsrA Sulphur sulfite reductase uncultured bacterium 8373.0280 117926324 nreB Metal Resistance Nickel Magnetococcus sp. MC-1 16052.7877 35154.9901 30627.4927 70671633 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 7062.5583 9144.6524 16214.2767 30862.3336 15770.2404 26730.0759 20463.6499 9563.0609 57224216 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 8815.7129 7519.6892 11115.2183 10246.1926 38373201 nosZ Nitrogen Denitrification uncultured bacterium 5841.5624 14013.2455 31445.0523 22776858 alkK Organic Remediation Others Oceanobacillus iheyensis HTE831 13992.9559 10325.2501 11869.4275 102781.2880 11182.4148 57387.1591 33999.9486 19835.1316 16859.2375 111073759 endochitinase Carbon cycling Carbon degradataion Chitin uncultured bacterium 19299.1263 45044.0758 86159495 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C 11436.3644 4192.9508 7318.9186 63759.3878 81329.4092 55822.0444 8624.3419 121583358 ophC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 8995.1645 8302.1465 16901.8605 19836.4342 13235.6173 5646.6933 91688363 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 11415.5886 81251645 nirS Nitrogen Denitrification uncultured organism 11213.1938 12638.2322 22758.5446 49109.0546 20751.8212 15845.1461 62391246 benAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium glutamicum ATCC 13032 10054.0672 5548.6514 4550.0246 11931.3375 6950.7486 158514526 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9525.9267 28781.5388 21198.8426 70989409 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 6971.4138 11201.3401 41491.0862 16200.8597 13340.4031 57887.9609 24929.3799 37366.4611 66572050 vanA Carbon cycling Carbon degradataion Others Xanthomonas campestris pv. campestris str. 8004 11108.9590 28780.7763 17660.7773 149793650 czcD Metal Resistance Cadmium,Cobalt,Zinc Thermosipho melanesiensis BI429 13498.7848 11632.8170 20970.9193 14133.4699 48963 xylanase Carbon cycling Carbon degradataion Hemicellulose Butyrivibrio fibrisolvens 10250.8872 4130.1015 30905.4601 11671.0958 23235.4623 7995.6088 90590062 czcA Metal Resistance Cadmium,Cobalt,Zinc Flavobacterium johnsoniae UW101 6772.8400 24809.5315 8398.7465 26924.2349 10052.5946 33111.7158 67999863 amyA Carbon cycling Carbon degradataion Starch Schizosaccharomyces pombe 972h- 8069.4337 83017282 gyrB other category Phylogenetic marker Microbulbifer sp. MBIC08249 8507.6185 15827.9817 14414.5558 28542635 nirS Nitrogen Denitrification uncultured bacterium 10920.5528 3715.3353 9522.6864 21320.4082 67873795 ara Carbon cycling Carbon degradataion Hemicellulose Clostridium thermocellum ATCC 27405 12281.4104 4805.2397 8928.8379 9217.2363 26195.2248 25884.6908 21679.7058 2588989 phdI Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. 9315.5815 56525.2876 86431.6444 46328.3687 86573252 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 15934.7631 4584.8677 14654.7265 19033.7699 20943.6311 18912.7868 29638.1451 17823.2408 83838572 phn Organic Remediation Herbicides related compound Roseovarius nubinhibens ISM 22707.7055 10448.5820 38424.6645 17268.9773 25458.8796 74026.7771 75835.7166 54780.1876 103812.2785 6320852 alkK Organic Remediation Others Saccharomyces cerevisiae 5839.3550 13876.1660 68553308 dsrA Sulphur sulfite reductase Prosthecochloris aestuarii DSM 271 65944.2038 81337.6645 87281294 nirS Nitrogen Denitrification uncultured bacterium 18541.4036 10828.9514 38001.4461 96042.9175 17111.8161 19910.4640 28731.4426 19135.5554 13532.4996 154300686 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Botryotinia fuckeliana B05.10 32519.3370 19044.0656 20997.8297 58884.4672 36772.1364 157316970 pcc Carbon cycling Carbon fixation Shewanella sediminis HAW-EB3 8599.9613 85623.7348 63330.8314 15551693 gyrB other category Phylogenetic marker Serratia grimesii 17034.8980 4811.5336 3840.6693 14150.7443 7491.3738 4527.5794 49530001 ChrA Metal Resistance Chromium Acinetobacter sp. ADP1 14767.8779 6226.7546 11736.6065 31632.1554 48893.3533 118472845 linB Organic Remediation Pesticides related compound Mycobacterium smegmatis str. MC2 155 23958.2889 8665.3124 13206.4793 152981778 sox Sulphur Sulphur oxidation Janthinobacterium sp. Marseille 10082.2057 24188.2315 98978105 czcA Metal Resistance Cadmium,Cobalt,Zinc Sphingopyxis alaskensis RB2256 20905.6939 5316.6792 36166.9120 56918.3685 6026.1842 150014852 rubisco Carbon cycling Carbon fixation uncultured bacterium 30827.5065 28487.9170 35396.4043 55946.9794 126718811 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. SK209-2-6 5176.1466 10688.6247 84375761 amyA Carbon cycling Carbon degradataion Starch Vibrio splendidus 12B01 6410.6953 9772.3172 11824.8996 71919878 cmuA Organic Remediation Chlorinated solvents uncultured bacterium 14780.5343 24663.9382 28977.8947 38977.5998 113867726 qorL Organic Remediation Aromatics Polycyclic aromatics Ralstonia eutropha H16 6608.3414 3157528 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 11329.9378 10605.4612 19841.0662 15898844 catechol_B Organic Remediation Aromatics Other aromatics Sulfolobus solfataricus P2 12881.1421 4103.9154 10150.5591 28260.1354 44819.5304 27448.6668 5920.5730 13373.6062 157404591 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 10941.7610 5913.9072 31591.3489 53574.1305 43301.1309 8678.3097 9270.3358 10747.2630 1841362 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 8598.7335 5224.6484 16695.7502 20383.4065 52355214 ppx Phosphorus Phosphorus utilization Bartonella vinsonii subsp. arupensis 42816.4207 11602.0422 29994.3504 66638.4758 10553.5135 39942302 pheA Organic Remediation Aromatics Other aromatics Magnaporthe grisea 70-15 15685.3489 4921.3098 6218.7525 16842.7479 13451.2790 37169.4795 10407.6486 14413.6757 115353435 endochitinase Carbon cycling Carbon degradataion Chitin Chaetomium globosum 32221.5651 29230.5122 20306.0261 106773720 TerZ Metal Resistance Tellurium Clostridium sp. OhILAs 16139.2880 8301.5261 33659.2965 35696.3870 66359.1576 53152.1945 33316.1192 13185.1823 22254.1769 158450536 Al Metal Resistance Aluminum Coprococcus eutactus ATCC 27759 32590.1797 57186.6548 34405.5684 40023.2832 68135565 nifH Nitrogen Nitrogen fixation uncultured bacterium 17299.4819 10255.5148 34148.8196 60001.8614 71344.5271 56423.3263 24213.2727 10699.1572 54018348 TerZ Metal Resistance Tellurium Nocardia farcinica IFM 10152 5619.3876 5391.0884 21424.0794 11162.8385 35056.5100 7644.6591 27461255 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium butyricum 23457.0408 3574.0882 23198.3374 27923.8216 148242895 alkK Organic Remediation Others Synechococcus sp. RCC307 17118.3495 4328.3895 46598.0305 29583.2342 40614.1032 4748.2070 11554.9805 153855439 nifH Nitrogen Nitrogen fixation Dorea longicatena DSM 13814 16677.0167 9605.7713 16924.6380 25843.1569 41513.4346 7661.8663 70990360 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus fumigatus Af293 9548.7222 24680.9231 24722.7806 25888.8118 3449366 rubisco Carbon cycling Carbon fixation Halothiobacillus neapolitanus 12364.0205 24536.6732 11000.9887 21487.6671 126637987 hydrogenase Energy process Energy process Shewanella loihica PV-4 10176.5144 20806.6575 35250.9660 36349.5555 8387.2947 152973282 PobA Organic Remediation Aromatics Aromatic carboxylic acid Klebsiella pneumoniae subsp. pneumoniae MGH 78578 15963.1861 16642.4203 56410.4303 14204.4524 39439.9870 11315.5992 20282.3626 84385274 amyA Carbon cycling Carbon degradataion Starch Vibrio splendidus 12B01 6064.4720 3092.0144 20070.6138 12605.7864 16157.7013 5697.9294 116228570 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 11547.7782 32896.7378 9857.8841 15470.4916 600813 nitA Organic Remediation Aromatics Other aromatics Saccharomyces cerevisiae 10165.8042 12293.9297 54313.0303 22679.7209 9335.4700 27779.0718 54507.8352 14184.2259 44249.3532 2983280 ArsC Metal Resistance Arsenic Aquifex aeolicus VF5 13065.0197 11230.4332 50305.4250 19280.6098 41830.1773 25976.9725 49647.3756 94425371 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas sp. SKA58 9220.1650 13689.6628 24265.4637 27377730 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 20239.3460 8858.5026 48943.2027 74012.9229 34796.1846 14618.6230 14001.4521 63029739 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7382.4434 11598.7745 9332.5771 23552.4335 24131.7633 21221174 alkK Organic Remediation Others Streptomyces coelicolor A3(2) 13030.8367 5444.5873 16556.3370 28939.1616 82715000 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida F1 11125.2469 3840.1649 30696.4744 40058.3092 37707.6776 10540.8321 15255.7240 88771707 rubisco Carbon cycling Carbon fixation Thiovibrio halophilus 19592.3461 16179.9723 32024.8007 55196.6018 7379.5820 71002028 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 12751.8392 12061.3829 14995.6935 118424419 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 16130.0701 93675.2336 3840.6732 15890159 glucoamylase Carbon cycling Carbon degradataion Starch Agrobacterium tumefaciens str. C58 17334.5499 9197.2318 23442.6445 17894.5711 39687.1210 57862.1549 12329.0285 91784525 ppx Phosphorus Phosphorus utilization Burkholderia xenovorans LB400 6389.9141 10038.7624 89360513 gyrB other category Phylogenetic marker Xanthobacter autotrophicus Py2 19814.2543 15881.4665 48708.6302 12150.6966 10119.0132 17935317 pimF Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 12035.0482 9017.6194 33082.8017 11770.2537 145233875 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 14923.6704 6888.5390 10581.0873 15488.1387 17611.5097 9846.1508 31459.1459 78193286 silC Metal Resistance Silver Geobacter metallireducens GS-15 7157.7834 6485.7892 21544.6391 50809.7439 22829.0985 33237528 rubisco Carbon cycling Carbon fixation Prochlorococcus marinus subsp. marinus str. CCMP1375 14846.3463 26329.6422 26224.7405 66062.4391 11907.8170 47898.3130 14027.4395 11075.5191 106881116 TerZ Metal Resistance Tellurium Psychromonas ingrahamii 37 9496.9626 3848.8927 10016.2552 52058.3455 11633.6892 25564.5873 23935.5753 6702.0679 112821413 czcA Metal Resistance Cadmium,Cobalt,Zinc Sphingomonas sp. KA1 11490.0138 4555.9144 18310.6087 34449.2393 18097.2598 22035.7312 8290.2424 6713.5127 109452398 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 10474.4427 8456.8677 25403.5421 16010.9893 21276.5095 13898421 dsrA Sulphur sulfite reductase uncultured napthalene mineralizing bacterium 14797.1716 12022.4908 39652.3957 17451.2777 23310.5411 4499.6467 12770.4530 7529.2883 32261705 napA Nitrogen Dissimilatory N reduction Helicobacter hepaticus ATCC 51449 9283.3712 8108.0656 4230.9675 24979.6838 18255.5413 115251004 rd Organic Remediation Chlorinated solvents Clostridium difficile 630 10186.3568 5373.7046 150954332 dmsA Organic Remediation Others Klebsiella pneumoniae subsp. pneumoniae MGH 78578 12520.7431 22489.5186 157699987 alkK Organic Remediation Others Arcobacter butzleri RM4018 34992.6181 83734.8176 57115.8752 23867880 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 14842.6756 21283.9078 40810.6289 17360.6852 10847.9358 158320061 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs 36663.7263 16354.5136 24305.7684 69629.5253 19372.5034 73341.8347 34895.7201 14928.0517 149141115 phdCI Organic Remediation Aromatics Polycyclic aromatics Lentisphaera araneosa HTCC2155 10856.1638 4035.5078 158514510 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 28131.5581 65479.3875 38200.0818 158337761 nifH Nitrogen Nitrogen fixation Acaryochloris marina MBIC11017 9240.2365 7449.2925 83716898 alkK Organic Remediation Others Burkholderia thailandensis E264 9755.6552 6961.4187 33822.0262 31067.4484 3128393 ara Carbon cycling Carbon degradataion Hemicellulose Cytophaga xylanolytica 11714.6267 15451.0352 14004.4366 134093787 SilA Metal Resistance Silver Herminiimonas arsenicoxydans 4734.5207 4428.4293 16450.6341 20743.0579 30137.2409 12667676 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr624-16 12110.64245 3909.9744 4601.0289 28960.811 89143723 pulA Carbon cycling Carbon degradataion Starch Francisella tularensis subsp. holarctica LVS 18052.89095 7589.46105 65186.86075 54596.22135 77381500 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 9967.3422 56091.893 66203.5192 11831.35713333 72162094 nmoA Organic Remediation Aromatics Nitoaromatics Thermobifida fusca YX 9062.4987 4008.4664 23016.79815 20841.0429 11475.24136667 10068.72696667 149188732 atzB Organic Remediation Herbicides related compound Vibrio shilonii AK1 32048.09385 7254.05546667 11734.81185 31956.34363333 29004.34096667 41811.61663333 91692993 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 8854.04035 52428.5488 28806.7649 121604803 PobA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 8552.59526667 42777.28196667 8078.65505 6981.76853333 9554.0523 156057439 nbaC Organic Remediation Aromatics Nitoaromatics Sclerotinia sclerotiorum 1980 7318.68085 37773.37445 34614.34325 150270597 trzN Organic Remediation Herbicides related compound Bacteroides capillosus ATCC 29799 20452.2526 35596.22543333 23104.53123333 27315.53375 13278.1531 89512796 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5221.9222 14112.87053333 10531.45515 27099.0852 73697402 amoA Nitrogen Nitrification uncultured crenarchaeote 22679.9297 13736.7854 5736.399 12390.6739 33274.036 14865.70505 8336.82725 119195617 nbaC Organic Remediation Aromatics Nitoaromatics Coccidioides immitis RS 21987.8975 12853.2957 22661.4602 43264.74593333 19959.9307 23079.4889 49393.38903333 18650.1378 36601.3177 148556156 mauAB Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 11134.57795 6945.47603333 59118.37876667 25042.9229 30504.24933333 154157399 alkJ Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 13891.1329 15705.02883333 37218.71655 42370.50663333 90577214 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio angustum S14 21088.44006667 4609.20595 5249.2607 12626.7945 16497.66573333 149357989 linB Organic Remediation Pesticides related compound Marinobacter algicola DG893 20640.53205 37448.31185 47320.81 121605350 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 16609.1563 15235.77026667 144906107 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 17117.86735 118027455 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 7760.7822 16505.69133333 14730.09865 5265.14705 5379.46435 87281113 nirK Nitrogen Denitrification uncultured bacterium 12962.98575 11736.1981 12505.605 26547.8777 8022.4665 30037.99786667 10199.19675 74038406 nirS Nitrogen Denitrification uncultured bacterium 10582.9615 10849.5334 12783.20376667 37301.07883333 24019.56813333 55614.72593333 13870.50426667 5882.1715 12484.57393333 85823679 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 35012.9735 26977.07156667 24102.3129 41103.7967 14636.94533333 31595.96143333 73294212 aclB Carbon cycling Carbon fixation Sulfurimonas sp. Go25-1 11742.7704 13450.6245 25166.2106 43464.8875 28154.46915 29005.34096667 48349.91205 34641.8476 46988.2529 119963044 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter aurescens TC1 17336.58045 5071.207 7607.71043333 17362.6782 37442.734 49271.48423333 5094.56635 77459206 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 12655.97585 33338.11763333 780717 nifH Nitrogen Nitrogen fixation unidentified marine eubacterium 21677.8769 12143.6672 35372.00636667 87281205 nirS Nitrogen Denitrification uncultured bacterium 16769.30735 4616.3153 4478.7049 33683.4929 37493.49196667 83840579 sox Sulphur Sulphur oxidation Sulfitobacter sp. NAS-14.1 15383.3203 13282.5216 10592.2803 22863.3229 40062956 mdlC Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 443 11531.5386 14202.99555 20750.64495 62149182 nifH Nitrogen Nitrogen fixation uncultured bacterium 27118.9873 39757.3125 6304.68545 34017136 dsrA Sulphur sulfite reductase uncultured bacterium 35737.98036667 82296.79075 87731.1593 43682.2628 78183893 CopA Metal Resistance Copper Synechococcus sp. CC9902 8040.7433 4654.53315 16244.414 18981.4436 149808604 nifH Nitrogen Nitrogen fixation Moritella sp. PE36 20495.76975 14281.3833 17209.6844 11482.8075 8071.64286667 63255746 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas syringae pv. syringae B728a 14350.9204 5625.8758 30402.0871 77378783 nirS Nitrogen Denitrification uncultured bacterium 20349.53 15252.42753333 21732.26553333 26767.40525 62339.50646667 10536.9841 14672.96896667 124260742 rubisco Carbon cycling Carbon fixation Methylibium petroleiphilum PM1 15141.63305 34085.93065 47384.5443 49108.88256667 46307952 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8841.55155 4506.29025 7969.0453 29821.1105 14433.0206 28733.88923333 7014.0274 6650.44745 147668931 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. BAV1 14878.3081 15648.62075 12362.1466 67901842 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus nidulans FGSC A4 4852.6999 4534.52136667 10282.2508 17258.29755 8145.9722 157318432 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 18473.5978 11598.48576667 13954.19653333 12963.0924 16624.1769 15745.25355 16846.6845 66967807 nifH Nitrogen Nitrogen fixation uncultured bacterium 6614.82455 6363.52255 27055.20466667 8455.9914 34145.18863333 7518.2539 148240951 glucoamylase Carbon cycling Carbon degradataion Starch Bradyrhizobium sp. BTAi1 14790.5423 23474.0459 59380.8163 18893674 trzA Organic Remediation Herbicides related compound Pyrococcus furiosus DSM 3638 14912.05185 14056.97663333 16460.869 67527662 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 13559.9611 23494189 ChrA Metal Resistance Chromium Corynebacterium efficiens YS-314 8133.11495 11232.10806667 150837672 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 21750.1051 55433.9274 33751.42493333 157372940 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Serratia proteamaculans 568 10511.4782 16552.2772 32471.18426667 89890612 gyrB other category Phylogenetic marker Flavobacteria bacterium BBFL7 46438.2814 14956.77633333 71519.90593333 11017.63695 32893.1492 23354.0646 32225.83555 156061267 tftH Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 10152.4592 18807.6318 10349.53406667 36772.37763333 28562.7318 30452.7838 7188.90025 29466030 norB Nitrogen Denitrification uncultured bacterium 5298.6729 9578.22456667 6460912 linB Organic Remediation Pesticides related compound Deinococcus radiodurans R1 7776.635 20151.50363333 126665657 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 14494.2655 7581.71335 14914.9708 11839.78756667 11400.61176667 13770.19423333 154352008 Al Metal Resistance Aluminum Bacillus amyloliquefaciens FZB42 8113.70105 22941.57425 39610.23635 126093885 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 14999.2923 8669.40446667 24328.3245 15789.4324 12241.08195 39504.85253333 20134.8845 6734.97136667 11745.67526667 84386977 dmsA Organic Remediation Others Vibrio splendidus 12B01 10836.8072 9305.3113 13727.09845 60986.41065 44724.19136667 23615.0806 15157718 tftH Organic Remediation Aromatics Chlorinated aromatics Agrobacterium tumefaciens str. C58 8812.714 6725.6926 14357.0358 27711.88076667 10763.89686667 33561.76596667 19560.05766667 14199.3611 134301018 dsrA Sulphur sulfite reductase Desulfotomaculum reducens MI-1 12244.0691 10924.77195 15891456 pimF Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 8910.4898 15620.0978 16723.87303333 20516839 cda Carbon cycling Carbon degradataion Starch Thermoanaerobacter tengcongensis MB4 14370.6451 22882.88656667 47367.9338 23506.4849 47430.1541 35115.35113333 6229.08175 86158916 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C 15191.63016667 14280.49666667 119483824 nitA Organic Remediation Aromatics Other aromatics Neosartorya fischeri NRRL 181 15043.7766 16405.04143333 50842032 ppx Phosphorus Phosphorus utilization Propionibacterium acnes KPA171202 12000.0247 6404.11115 7388.54685 17377.12683333 124113453 amyA Carbon cycling Carbon degradataion Starch Vibrio cholerae 1587 10405.1467 8103.6397 39046.0292 14755.16585 11123.37815 18630.7964 16975.03105 25445.85323333 54026346 TerC Metal Resistance Tellurium Nocardia farcinica IFM 10152 29490.71633333 28170.17783333 36271.13546667 9779.21163333 5405.73456667 152976828 czcD Metal Resistance Cadmium,Cobalt,Zinc Bacillus cereus subsp. cytotoxis NVH 391-98 8894.84755 2792.2773 9591.7899 9060.69475 153956092 apu Carbon cycling Carbon degradataion Starch Clostridium kluyveri DSM 555 20467.47865 24312.22755 20529.1798 118037783 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN 11531.00255 4484.1801 22650.56225 16213.7546 126618883 nifH Nitrogen Nitrogen fixation Cyanothece sp. CCY0110 8488.32273333 28463.14815 146232455 silC Metal Resistance Silver Dichelobacter nodosus VCS1703A 6014.35875 11338.69385 14997.382 106885285 atzA Organic Remediation Herbicides related compound Clostridium phytofermentans ISDg 17616.1589 15436.35286667 15066.8778 30153.63745 19059.8954 23562.7787 94471011 nifH Nitrogen Nitrogen fixation uncultured bacterium 20588.03665 8373.40913333 52457.87285 18444.52405 41026.94463333 116662379 cadBD Metal Resistance Cadmium Arthrobacter sp. FB24 8726.1837 3174.62745 55313.45295 41100.36315 12782.19903333 73748662 hydrogenase Energy process Energy process Dehalococcoides sp. CBDB1 7378.6499 5967.08155 7595.3107 17307.78285 27658.41695 35230.21946667 6666.52685 8096.25345 28869111 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. tomato str. DC3000 7967.5261 8292.06425 24678.6035 9103.90415 34443.8109 119189287 ChrA Metal Resistance Chromium Coccidioides immitis RS 16469.50045 11137.6983 116249151 nahF Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 8447.26295 4225.86465 146297724 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Caldicellulosiruptor saccharolyticus DSM 8903 13533.1313 18285.0264 28204344 FTHFS Carbon cycling Acetogenesis Clostridium tetani E88 19964.60925 16400.7603 19421.93646667 40065.13423333 21783.04255 17981.23005 35634.58606667 13350.14016667 23326.67173333 76873897 gyrB other category Phylogenetic marker Pseudoalteromonas haloplanktis TAC125 16621.51195 43078.2139 66392.52983333 111020426 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 10324.50195 4881.9323 36932.27593333 10408.3321 39913.9968 26513.57436667 144905457 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 16379.07063333 6319951 BADH Organic Remediation Aromatics Other aromatics Saccharomyces cerevisiae 11809.87215 53136.5395 19132.9775 7467.8395 10266.0947 54308485 amyA Carbon cycling Carbon degradataion Starch Photobacterium profundum SS9 6003.6041 7926.38233333 14916.61765 12724991 endochitinase Carbon cycling Carbon degradataion Chitin Lactococcus lactis subsp. lactis Il1403 13780.02556667 33133.93235 27540.70255 38558.64266667 99083197 nifH Nitrogen Nitrogen fixation uncultured bacterium 8969.23115 16659.97886667 26680.13363333 65301.83155 11720.48886667 34918.1119 25564.6665 14210.3094 88857577 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas tunicata D2 11469.50785 25270.2383 23646.7066 19018.43376667 85835475 tfdA Organic Remediation Aromatics Chlorinated aromatics Vibrio sp. MED222 15348.8918 26875.45155 25777.08496667 91786345 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 15741.4911 16492.1592 126105551 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 18575.33165 3394.2608 46650.1199 32483.67896667 144905682 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 19502.42046667 68913.4857 51056.78816667 78224701 cytochrome Energy process Energy process Geobacter metallireducens GS-15 11616.64605 5441.22505 14480.04176667 18750.4123 56432.14985 7058.22985 12081.5327 89953008 czcA Metal Resistance Cadmium,Cobalt,Zinc Saccharophagus degradans 2-40 11464.90265 5524.6099 6661.17953333 30026.36706667 16986.54465 27910.9998 158524010 dsrA Sulphur sulfite reductase uncultured bacterium 11505.42225 9256.8272 11703.32165 68250350 pheA Organic Remediation Aromatics Other aromatics Pseudomonas sp. M1 10689.4938 9657.8317 111279529 ChrA Metal Resistance Chromium Acidovorax avenae subsp. citrulli AAC00-1 9830.4446 4454.08585 10397.33826667 13779.2082 90411492 nreB Metal Resistance Nickel Photobacterium profundum 3TCK 24296.54215 5708.49055 39396.23705 16338.13743333 16267.03745 94483091 arsB Metal Resistance Arsenic Ochrobactrum tritici 14302.05205 5348.23743333 17177.67195 24944.60616667 16656.92195 81428811 amyA Carbon cycling Carbon degradataion Starch Lactobacillus sakei subsp. sakei 23K 13419.02605 11923.50293333 52168.72345 15247.3877 30595.08716667 86164754 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MED121 8892.21255 19656.7388 6039.3734 118686287 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 14514.13525 53776.39955 19347.85565 24128.90723333 6798.5908 82745724 endochitinase Carbon cycling Carbon degradataion Chitin Clostridium beijerincki NCIMB 8052 12591.70085 40602.3281 45271.92415 60966.32723333 84696020 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 5383.1976 7937.4723 89349691 mer Metal Resistance Mercury Xanthobacter autotrophicus Py2 17046.0431 5977.79523333 24365.2201 36985.9551 24438.86526667 24024.4287 9063.1569 28815.08426667 134052085 CopA Metal Resistance Copper Desulfotomaculum reducens MI-1 13993.4476 24257.5774 153011323 bclA Organic Remediation Aromatics Aromatic carboxylic acid Ochrobactrum anthropi ATCC 49188 25920.1429 15444.25453333 9934.6402 56869.11976667 27230.57193333 48045.64563333 6791.54545 158319868 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs 9195.33325 3819.55156667 4069.1201 33850.33075 28369.06046667 84516149 pimF Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 23124.9702 5846.38773333 23934.98803333 91120.7696 69561.03563333 68098.4036 8683.4535 10093.2296 14235.02923333 85703119 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 19946.86626667 4500.48375 13766.3329 42045.14 18566.2098 46949.76413333 31727.0626 89898407 amyA Carbon cycling Carbon degradataion Starch Chlamydophila felis Fe/C-56 13543.0504 28319.7884 11723.7302 22892.23456667 76667357 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 12542.3771 5848.1811 12072.97446667 22358.7669 9714.2175 46486.6906 11836.83755 31202.14273333 123991438 exochitinase Carbon cycling Carbon degradataion Chitin Microscilla marina ATCC 23134 9827.45165 5544.3711 33161.7715 77378703 nirS Nitrogen Denitrification uncultured bacterium 14406.3677 7787.25943333 13524.9794 44604.83546667 75028.7807 57973.69586667 19608.36813333 10750.05996667 14226.55846667 60494240 pcc Carbon cycling Carbon fixation Bacteroides fragilis NCTC 9343 28456.01893333 3612.6752 15466.342 52699.05326667 31871.14126667 76868.13933333 114054545 xylanase Carbon cycling Carbon degradataion Hemicellulose Geobacillus stearothermophilus 16828.7263 5970.4077 38359.51875 19945.51416667 34957.5189 10569.51213333 16271.75835 24512.0845 11496145 mer Metal Resistance Mercury Pseudoalteromonas haloplanktis 14345.4994 9034.9365 8390.72005 9443.5277 32970.04746667 32895202 nirS Nitrogen Denitrification uncultured bacterium 7164.72075 4166.00315 22007.2312 27229.1027 77975926 dmsA Organic Remediation Others Yersinia frederiksenii ATCC 33641 7205.9873 13361.89356667 48102.8416 70730276 nitA Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 14904.7818 14600.84653333 8039.1343 10021.45975 55291.2164 21694.36175 14736.77773333 116185463 exochitinase Carbon cycling Carbon degradataion Chitin Vibrio sp. Ex25 51366.3166 4698.78905 7726.69865 24000.7153 19510.3334 20787.66945 68230223 TerC Metal Resistance Tellurium Frankia sp. EAN1pec 7523.6045 9289.97615 13683.791 146153399 nbaC Organic Remediation Aromatics Nitoaromatics Flavobacterium johnsoniae UW101 10804.16655 7480.0322 12364.1009 18180.94623333 5131.38785 3511233 benAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 17230.82695 16136.4824 21262.978 24483.2649 8581.6592 152957979 mauAB Organic Remediation Herbicides related compound uncultured bacterium 15635.75055 2767.31185 16195.6466 19985.17835 126359361 ChrA Metal Resistance Chromium Pseudomonas putida GB-1 7320.2793 14630.09 11203.8743 22776715 ChnA Organic Remediation Other Hydrocarbons Oceanobacillus iheyensis HTE831 65443.007 32150.92403333 77038.29425 128688.6015 40070.8609 57949.01613333 55973.96286667 49175.00663333 137981.48825 126737391 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 7257.5996 12236.2056 123440846 phn Organic Remediation Herbicides related compound Yersinia enterocolitica subsp. enterocolitica 8081 31265.8387 8607.32466667 9361.246 69170.5221 31775.4586 54159.6512 7614.0214 5046.16336667 111073799 endochitinase Carbon cycling Carbon degradataion Chitin uncultured bacterium 10087.81693333 35649.87205 18125.2493 52107.10653333 92913835 gyrB other category Phylogenetic marker Mycobacterium sp. KMS 8835.4203 36379.7864 9837.55336667 85690157 gyrB other category Phylogenetic marker Erythrobacter sp. NAP1 9168.3738 20318.2411 25955.48615 18920.22456667 4705.1214 152982608 nasA Nitrogen Assimilatory N reduction Janthinobacterium sp. Marseille 9627.32235 5215.49396667 5834.61145 37498.898 13184.17553333 18313456 dsrA Sulphur sulfite reductase Pyrobaculum aerophilum str. IM2 10652.0755 15484.88385 2897599 linB Organic Remediation Pesticides related compound Corynebacterium sp. 11224.45155 10255.347 29803.2782 22299890 nifH Nitrogen Nitrogen fixation Thermosynechococcus elongatus BP-1 12665.2415 5268.04085 31848.5109 10565.9564 12669.53076667 126035059 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 11576.60175 13390.06106667 7500.7372 21538.42246667 14368.26756667 39574432 alkK Organic Remediation Others Bdellovibrio bacteriovorus HD100 12347.85465 38190.03883333 61691.49495 78301.6597 13159.1402 41698.57886667 53729.68593333 51814.2196 66852912 chnB Organic Remediation Other Hydrocarbons Aspergillus fumigatus Af293 7580.5944 3999.78235 95111085 TerC Metal Resistance Tellurium Pseudomonas 14012.26895 10519.98436667 18179.6375 27243.96713333 13097.5287 20722.55686667 10269.8494 14094.46695 22255690 nifH Nitrogen Nitrogen fixation Bradyrhizobium sp. 70b2 36078.8008 29166.79106667 50181.17945 51876.0601 6820.79035 46124359 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Gibberella zeae PH-1 19264.73996667 32122.6003 39772.0787 119871688 dsrA Sulphur sulfite reductase Pyrobaculum islandicum DSM 4184 10951.98595 28333.10043333 27114.6256 18956.1825 13112.7884 8168.54856667 30269525 nasA Nitrogen Assimilatory N reduction uncultured bacterium 11955.9805 11243.4033 62356.93145 8624.73563333 27757.70846667 49651671 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Yarrowia lipolytica CLIB122 7414.94805 13328.16355 99083045 nifH Nitrogen Nitrogen fixation uncultured bacterium 14534.3486 12653.98233333 16950.9894 37414.8859 20289.75203333 66468.30463333 21262.97583333 121713438 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 15369.5599 59443.8567 26852.28083333 139478573 mer Metal Resistance Mercury uncultured soil bacterium 16292.55455 2528.84846667 8337.54495 9799.36715 27703.0962 39563.5916 4281.8516 114550009 xylA Carbon cycling Carbon degradataion Hemicellulose alpha proteobacterium HTCC2255 12152.9598 84502904 nhh Organic Remediation Aromatics Nitoaromatics Oceanicola batsensis HTCC2597 11543.26573333 7283.24685 33108.37456667 5776.98046667 145254229 nagI Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 37797.68726667 4836.74493333 24058.6682 39248.90663333 33357.95923333 29470.142 10639.47956667 10952.05306667 152994542 mdlD Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 8586.7073 11339.9951 108463501 nbaC Organic Remediation Aromatics Nitoaromatics Myxococcus xanthus DK 1622 48748.28236667 4405.62985 20165.2397 72333.13225 29399.2887 12667664 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr828-6 24638.5215 68170.63485 56720.7783 61110.30483333 156450842 czcA Metal Resistance Cadmium,Cobalt,Zinc Methylobacterium chloromethanicum CM4 12862.2502 9529.89485 156104520 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 28702.77063333 21396.90746667 14732.34605 19450.74255 83369.7289 24095.0545 16697.5731 117924502 nifH Nitrogen Nitrogen fixation Magnetococcus sp. MC-1 11237.97285 6770.52635 16491.32 17208.9832 20008.10546667 93357245 czcA Metal Resistance Cadmium,Cobalt,Zinc Ralstonia metallidurans CH34 9117.7579 4573.9805 17432.4227 13137.49373333 39830.5123 5176.0157 145047072 ChrA Metal Resistance Chromium Polynucleobacter sp. QLW-P1DMWA-1 7985.73185 14182.48265 20501965 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 23013.2185 24944.8438 71145725 amyA Carbon cycling Carbon degradataion Starch Colwellia psychrerythraea 34H 12475.0096 8598.63536667 32999.46605 52605.761 13583.34173333 26751.97553333 16978.66243333 18857.31026667 28881219 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Neurospora crassa 8187.0613 36666.26555 13655.9174 26212.9394 25243.29326667 5101.32935 153814519 CopA Metal Resistance Copper Ruminococcus torques ATCC 27756 7709.35485 124009012 nplT Carbon cycling Carbon degradataion Starch Microscilla marina ATCC 23134 18443.8927 4070.0165 64718.9425 61849.0559 153821437 czcD Metal Resistance Cadmium,Cobalt,Zinc Vibrio cholerae B33 9242.68133333 15355.53866667 49065.72073333 34190.67345 29621.94413333 13887.57096667 6343.17063333 7157.65496667 148830292 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. SD-21 6068.56235 12972.08895 23923.09886667 106882805 phn Organic Remediation Herbicides related compound Psychromonas ingrahamii 37 2866.6504 5069.0273 4564.684 146301088 CadA Metal Resistance Cadmium Flavobacterium johnsoniae UW101 14895.90746667 10705.01105 18839.00015 46740.88086667 22943.5738 63253817 nifH Nitrogen Nitrogen fixation uncultured Enterobacteriaceae bacterium 4513.28965 14209495 CopA Metal Resistance Copper Bradyrhizobium elkanii 4998.1918 119191930 glx Carbon cycling Carbon degradataion Lignin Coccidioides immitis RS 5127.6119 10986.49895 20078.3139 21518.14283333 3647.07585 115432156 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 2919.00553333 16478.99395 16629.2936 67523489 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 18719.36296667 14247.6409 59350.85735 87881.70265 60371.75243333 35650.1429 10873.1814 74797.7551 146296573 ara Carbon cycling Carbon degradataion Hemicellulose Caldicellulosiruptor saccharolyticus DSM 8903 12106.98163333 47919.07915 49816.45715 19079.8427 8135.9603 7442.70056667 126737435 nreB Metal Resistance Nickel Roseobacter sp. SK209-2-6 6026.23875 23943.13325 83857714 Arylest Organic Remediation Aromatics Other aromatics Croceibacter atlanticus HTCC2559 4417.81013333 30669.7579 11263.7374 37146.6082 8366.67905 119671055 ArsC Metal Resistance Arsenic Azoarcus sp. BH72 5172.61736667 5630.9628 7941.10013333 30058.00963333 9340.14093333 8476.1963 7106.42116667 84043019 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 2974.9313 14599.56405 89331681 gyrB other category Phylogenetic marker Chlamydophila felis Fe/C-56 12617.67963333 7825.3916 42302.1657 11339.56486667 6851.46285 12977.28425 24665.61485 50363719 endochitinase Carbon cycling Carbon degradataion Chitin Mesoplasma florum L1 3065.8134 8866.5805 80826.1102 37476.88295 53772.94433333 5419.6367 77378541 nirS Nitrogen Denitrification uncultured bacterium 2918.49365 6402.10505 41962.07835 25196.852 119472026 pulA Carbon cycling Carbon degradataion Starch Alteromonadales bacterium TW-7 23312.9294 10209.56966667 17022.4352 11531.9517 6768.33315 7280.786 116612694 PobA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 8067.4115 8373.82145 36200.33235 18777.31136667 10090.76585 7115.89375 10845.41165 139003239 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 7718.86573333 27885.93723333 51993.04803333 11695.87785 47080.59483333 11702.92533333 13972.86206667 25346.62976667 2073550 phtA Organic Remediation Aromatics Aromatic carboxylic acid Conidiobolus coronatus 9114.62313333 25592.512 25067.5638 25815.78306667 25766.8754 10622.1958 9600.01865 16028.53626667 156446879 nosZ Nitrogen Denitrification uncultured bacterium 4191.6243 12772.0047 91721363 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 2722.9708 4358.6183 12008.28145 8306.03946667 150955430 trzN Organic Remediation Herbicides related compound Klebsiella pneumoniae subsp. pneumoniae MGH 78578 5985.82113333 7134.06695 118419955 gyrB other category Phylogenetic marker Alcanivorax dieselolei 3627.27265 116195580 czcD Metal Resistance Cadmium,Cobalt,Zinc Chaetomium globosum CBS 148.51 5557.56385 13811.75556667 42897.03365 113528870 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 4000.3874 11566.36125 5783.28695 9935.78826667 9213.85523333 15787976 dsrB Sulphur sulfite reductase Desulfitobacterium dehalogenans 4102.81395 19019.94515 148241019 CueO Metal Resistance Copper Bradyrhizobium sp. BTAi1 4787.93465 29667.82175 33885.2254 23040.9416 3808.58895 63003133 benAB Organic Remediation Aromatics Aromatic carboxylic acid uncultured soil bacterium 3409.56992 8577.8667 10649.7532375 9638.29355 7349.56311667 4188.1978 157150472 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptococcus gordonii str. Challis substr. CH1 3802.2895 18768.93526667 8939.0958 91769806 CopA Metal Resistance Copper Psychrobacter sp. PRwf-1 4435.92673333 14660.33385 24743.633 16789.48955 16774.7402 4203.3721 6084.60955 3002555 rd Organic Remediation Chlorinated solvents Dehalospirillum multivorans 3900.77085 158110579 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec 4996.1512 17620.63695 23099154 pcc Carbon cycling Carbon fixation Oceanobacillus iheyensis HTE831 2394.0937 146406344 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 3233.9989 24462.8891 11073.70863333 3274.5065 157374541 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 10969.469 18815.042 12799.5158 114565095 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 5506.7052 11498.3498 71236.1095 15043.3325 30445.15573333 13278.2571 15076856 dsrB Sulphur sulfite reductase Desulfosporosinus orientis 13412.9378 289099 phenol_oxidase Carbon cycling Carbon degradataion Lignin Agaricus bisporus 9121.3876 114761465 alkK Organic Remediation Others Roseovarius sp. HTCC2601 3818.1501 6535.63335 21906.6321 108765644 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 2622.685 14343.72073333 6452.66075 148499651 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 34217.7125 27711.9832 8593.42245 7840.4912 56312526 bbsG Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 3289.0035 3794.15255 22127.4224 9551.53945 17449.1649 145622231 trzN Organic Remediation Herbicides related compound Petrotoga mobilis SJ95 13370.0422 11393.39566667 8098.1394 10750.3039 1946287 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas sp. 3881.8328 82719311 mer Metal Resistance Mercury Shewanella sp. W3-18-1 4046.78705 9531.67815 34275.64105 24311.53523333 41408404 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium subsp. paratuberculosis K-10 15398.8293 11785.4491 13795.0475 6499.84816667 35252.5791 11372.56913333 62391709 pcc Carbon cycling Carbon fixation Corynebacterium glutamicum ATCC 13032 4209.95245 15319.60105 33935.0418 18668.236 6564.4795 77384103 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 3851.8657 7306.27156667 5291.25775 1513069 CopA Metal Resistance Copper Listeria monocytogenes 5342.30676667 9683.23525 8623.6605 29605635 BADH Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 3664.0281 6904.09585 28372.65663333 32734.552 57048.41673333 6181.75525 9971.03946667 151362421 cellobiase Carbon cycling Carbon degradataion Cellulose Kineococcus radiotolerans SRS30216 3361.05515 9319.43896667 145221509 CopA Metal Resistance Copper Mycobacterium gilvum PYR-GCK 3205.10965 4787.3937 114570880 merB Metal Resistance Mercury Maricaulis maris MCS10 3371.5288 5827.718 8408.86955 88790515 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrococcus mobilis Nb-231 4899.0723 7096.49825 85688618 pimF Organic Remediation Aromatics Aromatic carboxylic acid Erythrobacter sp. NAP1 9457.39876667 11995.3501 17691.7354 110819013 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 5274.3414 5461.8784 40137.53025 23989.68113333 22245.1696 16030.3443 55377678 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 5499.613 5598.34085 67633920 nifH Nitrogen Nitrogen fixation Lyngbya majuscula CCAP 1446/4 8230.4825 4506.49515 41352.35645 13247.591 20602.06806667 2150117 Xamo Organic Remediation Other Hydrocarbons Burkholderia cepacia 5323.6029 8281.43135 88799857 proO Organic Remediation Aromatics Other aromatics Reinekea sp. MED297 6409.6341 13923.82943333 126213339 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 20315.9915 19361.595 12834.54416667 7697.6074 90569444 nirS Nitrogen Denitrification uncultured bacterium 2827.7632 41397940 ppk Phosphorus Phosphorus utilization Mycobacterium avium subsp. paratuberculosis K-10 3344.5948 12254.85465 15023.11195 10128.7905 111026297 alkK Organic Remediation Others Rhodococcus sp. RHA1 4632.36975 21937.21555 9269.45055 17865.60863333 62731916 nifH Nitrogen Nitrogen fixation uncultured bacterium 5616.92963333 148502383 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 3312.54665 4326.7351 13216.22005 148255762 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 5436.65576667 77685714 FTHFS Carbon cycling Acetogenesis Alkaliphilus metalliredigenes QYMF 3497.0311 71833794 gyrB other category Phylogenetic marker Helicobacter pametensis 14485.04616667 30336.76446667 18354.0946 31365.23266667 56130753 cnrA Metal Resistance Cobalt,Nickel Ralstonia metallidurans CH34 5216.5471 4458.41175 110599021 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter sp. FRC-32 6812.67663333 66801871 narG Nitrogen Denitrification unidentified bacterium 2871.978 33576841 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 6842.6287 5303.9099 10657.34813333 7066.5147 83311240 bco Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum magneticum AMB-1 4689.8311 9025.5723 146453303 czcD Metal Resistance Cadmium,Cobalt,Zinc Lodderomyces elongisporus NRRL YB-4239 9152.70035 6639.79583333 15013.40626667 8498.8288 24638.87106667 9741.2339 145960495 endochitinase Carbon cycling Carbon degradataion Chitin Vibrionales bacterium SWAT-3 7287.02286667 7834.03946667 40218016 phenol_oxidase Carbon cycling Carbon degradataion Lignin Flammulina velutipes 4001.8174 6336.11736667 156742580 xylA Carbon cycling Carbon degradataion Hemicellulose Roseiflexus castenholzii DSM 13941 2735.09915 3923.8809 6456476 gyrB other category Phylogenetic marker Grimontia hollisae 7302.31266667 10778.44855 7238.19145 12178.85333333 8734.9013 78212641 nitA Organic Remediation Aromatics Other aromatics Synechococcus sp. CC9605 4955.2853 14030.34175 14748.60733333 9214.99543333 3880.07715 4981.60486667 119863618 TerD Metal Resistance Tellurium Psychromonas ingrahamii 37 3508.1701 4118.4187 119896295 gyrB other category Phylogenetic marker Azoarcus sp. BH72 7296.2629 17035.2868 15111.58926667 86139485 pheA Organic Remediation Aromatics Other aromatics Roseobacter sp. MED193 12500.45933333 69778.9224 93359.93056667 93806.97123333 19908.58333333 110548.10413333 112299.95413333 64182.0236 10956961 benD Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans 3970.07446667 25753.38413333 22439.94803333 4046.1205 112944411 ppx Phosphorus Phosphorus utilization Lactobacillus reuteri 2639.842 25287.8783 118028954 Arylest Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 3338.8734 14228.41525 18971.42105 18889.27595 16124.83076667 55847393 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 4911.19535 60100871 nifH Nitrogen Nitrogen fixation uncultured bacterium 4562.6126 158315578 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec 2560.24795 149176164 catB Organic Remediation Aromatics BTEX and related aromatics Planctomyces maris DSM 8797 3286.9762 55772799 sox Sulphur Sulphur oxidation Thermus thermophilus HB8 3657.73766667 6424.22825 16676.9699 8709.5215 7084.0659 156446839 nosZ Nitrogen Denitrification uncultured bacterium 7496.15573333 12494.4437 29603.41463333 15592.3276 22895.2383 7586.2054 73534131 nifH Nitrogen Nitrogen fixation uncultured bacterium 8340.2689 18085.3484 10042.83055 17735.27276667 10500.00933333 24046.3885 45386199 narG Nitrogen Denitrification unidentified bacterium 9374.9981 8733.0471 33238736 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Prochlorococcus marinus subsp. marinus str. CCMP1375 3563.75615 67540440 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 6258.61286667 12731.83673333 4652.0294 6460.9825 5192.9347 28974734 dsrB Sulphur sulfite reductase uncultured bacterium 7371.7952 12537.93646667 14049.30365 8706.38735 7589.05996667 8034.94315 56609602 amyA Carbon cycling Carbon degradataion Starch Cystobacter fuscus 5103.6376 5714.5945 17659.1511 17381.5221 13791.8391 5825.9627 12422.52335 22900882 dsrB Sulphur sulfite reductase uncultured bacterium 4333.3012 30409.1856 9721.1488 114561697 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 8226.9195 10120.33625 9585.85503333 116743245 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5505.48675 6659.88076667 12519.3504 56962348 xylA Carbon cycling Carbon degradataion Hemicellulose Bacillus clausii KSM-K16 3997.25003333 6111.62263333 23961.59236667 21609.84426667 16984.31636667 11846.33583333 22394.14563333 27376231 xylA Carbon cycling Carbon degradataion Hemicellulose Bradyrhizobium japonicum USDA 110 4446.9602 110637836 ppx Phosphorus Phosphorus utilization Cytophaga hutchinsonii ATCC 33406 3502.61885 93138977 nirS Nitrogen Denitrification uncultured bacterium 3237.75733333 5345.9827 81140.0086 41643.75393333 39767.4088 150839955 czcD Metal Resistance Cadmium,Cobalt,Zinc Actinobacillus succinogenes 130Z 9901.8822 14029.43235 15276.57456667 45191.90926667 23794.0483 9892.11953333 78198348 CopA Metal Resistance Copper Synechococcus sp. CC9605 6167.8655 12436.6445 17930.0164 89274946 bphB Organic Remediation Aromatics Polycyclic aromatics Rhodococcus sp. R04 26742.6324 126320191 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 8783.7731 21305.0729 25729.19725 18804.56975 29852.29566667 37894.3085 18230.1419 20915.6022 87281197 nirS Nitrogen Denitrification uncultured bacterium 7178.41466667 11075.62765 29564.57956667 12942.7233 29560.6683 114319487 ZntA Metal Resistance Zinc Alkalilimnicola ehrlichei MLHE-1 3195.28385 5400.7134 38201085 CopA Metal Resistance Copper Corynebacterium diphtheriae 8402.31655 94264244 CopA Metal Resistance Copper delta proteobacterium MLMS-1 4960.1957 6478.2084 5967.02773333 6665.4253 115422926 nmoA Organic Remediation Aromatics Nitoaromatics Bordetella avium 197N 10324.3665 44804.16253333 33588.68495 43373.10463333 31050.8331 28967.49593333 16492.1351 35707.12376667 86143486 nmoA Organic Remediation Aromatics Nitoaromatics Flavobacterium sp. MED217 3781.01355 5290.9316 158312576 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec 9221.69756667 24900.26623333 102785.52843333 89383.2514 8874.6704 22169.98786667 31430.44886667 51966.2571 53854901 gyrB other category Phylogenetic marker Chlorella virus Marburg 1 4787.088 99030630 ppk Phosphorus Phosphorus utilization uncultured bacterium 4544.43426667 6964.4282 9559.11245 90199690 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 6322.187 15864.3106 20555.1068 17112.4715 25763.22106667 7697.0177 151588147 dehH109 Organic Remediation Chlorinated solvents Methylobacterium extorquens PA1 3141.02835 4673.4268 29343429 CopA Metal Resistance Copper Enterococcus faecalis V583 3476.1742 9236.5148 54016.0837 77577.31585 89342313 linB Organic Remediation Pesticides related compound Mycobacterium flavescens PYR-GCK 20442.51385 25502.1027 9132.09905 158138856 narG Nitrogen Denitrification uncultured bacterium 13899.409 12719.91015 71916431 czcD Metal Resistance Cadmium,Cobalt,Zinc Thermobifida fusca YX 5359.83955 6464.1896 67522677 czcD Metal Resistance Cadmium,Cobalt,Zinc Aspergillus nidulans FGSC A4 6833.4327 6792.10206667 119225972 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 3661.97235 17490.1354 14294.90923333 126699706 atzA Organic Remediation Herbicides related compound Clostridium difficile 630 4770.06613333 35016.0931 19180.18825 6948.03635 78778252 sox Sulphur Sulphur oxidation Thiomicrospira denitrificans ATCC 33889 5605.02255 8731.1096 7456.63525 11050.24195 6701.11875 146341362 ChrA Metal Resistance Chromium Bradyrhizobium sp. ORS278 2994.60755 5437.82673333 4015.3878 148656571 ChrA Metal Resistance Chromium Roseiflexus sp. RS-1 4876.34493333 16459.579 14220.68365 106886138 dsrB Sulphur sulfite reductase Clostridium phytofermentans ISDg 3108.9354 83646718 narG Nitrogen Denitrification Hahella chejuensis KCTC 2396 3057.20306667 4295.77015 12241.3409 46541.6233 25588.82283333 149783097 nirK Nitrogen Denitrification uncultured bacterium 4495.2571 5426.60215 14491.161 8808.86896667 15384204 phdCI Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. DBT1 3935.13045 4323.6319 9609.49045 11076.9752 110341388 ppx Phosphorus Phosphorus utilization Chlorobium ferrooxidans DSM 13031 3486.96465 157373500 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 3685.886 5915.55403333 7564.25785 32334.34285 12080.90023333 126105523 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 27726.22686667 32682.17775 34017066 mcrA Carbon cycling Methane Methane production Methanocaldococcus infernus 17196.27053333 111150371 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 9234.7348 7311.02786667 13534.59326667 7562.45853333 8388.60185 145254327 nmoA Organic Remediation Aromatics Nitoaromatics Aspergillus niger 3325.59623333 12126.72095 9901.71825 16801.88183333 5769.2464 118073604 ArsC Metal Resistance Arsenic Shewanella woodyi ATCC 51908 3695.3896 5905.92755 13003.5494 9958.84876667 9958.74725 121704720 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 19814.8945 39723.94133333 15105.47556667 14127.78683333 68349021 nirS Nitrogen Denitrification Pseudomonas sp. C10-2 3914.325 90588319 nbaC Organic Remediation Aromatics Nitoaromatics Flavobacterium johnsoniae UW101 4397.4063 21300.4287 9259.2297 7265.911 11037223 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens 7478.9984 29209.58205 25059.57653333 15537.49456667 5085.021 9131.375 7243.01215 21219562 ZntA Metal Resistance Zinc Streptomyces coelicolor A3(2) 3555.591 18375.7896 24245.176 16617.44355 94471325 narG Nitrogen Denitrification uncultured bacterium 10187.66905 4005.9511 9424.8201 13485.84756667 119897709 czcD Metal Resistance Cadmium,Cobalt,Zinc Azoarcus sp. BH72 3380.81233333 7013.31313333 7581.6534 4630.82966667 157681313 alkK Organic Remediation Others Bacillus pumilus SAFR-032 8347.27085 8371.79855 19782.61833333 11692.527 113528035 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 6271.96363333 18602.0986 8045.58656667 5250.6121 15062.3359 158331693 nmoA Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 6515.41655 152981660 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille 4876.39795 16179.58426667 46779.6165 89360249 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 12527.20483333 16201.9072 2398722 xylA Carbon cycling Carbon degradataion Hemicellulose Bacillus megaterium 7994.67113333 29488.8344 43344.4448 27872.10825 10055.24345 14889.87353333 35210335 gyrB other category Phylogenetic marker Alicyclobacillus acidiphilus 4413.4813 8246.7404 10935.24625 124267469 pheA Organic Remediation Aromatics Other aromatics Methylibium petroleiphilum PM1 7414.2334 22141.2926 40484.10473333 9277.71225 51807.23486667 27326.79216667 24472.71936667 6460025 TerD Metal Resistance Tellurium Deinococcus radiodurans R1 5009.13365 22280.14473333 10335.24103333 30242.99176667 134100482 pcpB Organic Remediation Herbicides related compound Saccharopolyspora erythraea NRRL 2338 4109.71796667 6978.6628 31867.78265 10005.2916 19446.247 89352588 oxdB Organic Remediation Aromatics Nitoaromatics Xanthobacter autotrophicus Py2 6239.04555 25027602 ppx Phosphorus Phosphorus utilization Corynebacterium efficiens YS-314 5230.0365 7492.84235 27407.36863333 8581.49445 11363.04226667 5138.4456 76165912 ChrA Metal Resistance Chromium Chloroflexus aurantiacus J-10-fl 3691.35695 5150.1351 36784269 CueO Metal Resistance Copper Photorhabdus luminescens subsp. laumondii TTO1 3615.42776667 5797.22005 28173.9249 28712.39935 6846.66876667 118173092 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 8785.0798 13090.44945 33088.81615 10845.37775 91976782 CopA Metal Resistance Copper Rhodopseudomonas palustris BisB5 4609.53565 8580.98523333 7519.38075 83316884 nirK Nitrogen Denitrification uncultured bacterium 5663.5683 6911.20346667 51641.29815 30636.76643333 4734.3668 5214.4667 115375557 endochitinase Carbon cycling Carbon degradataion Chitin Stigmatella aurantiaca DW4/3-1 3078.60276667 23490.2978 9596.27215 23876.25896667 5223.31805 4996790 gyrB other category Phylogenetic marker bacterium rM1 3939.7094 7471.32053333 9925.63865 157375353 CopA Metal Resistance Copper Shewanella sediminis HAW-EB3 3014.35466667 4254.92915 11700.8744 7760.88503333 46307908 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3518.8932 8302.73815 13807.3797 12736.40856667 11806.29843333 117999260 pbrA Metal Resistance Lead Comamonas testosteroni KF-1 23449.25576667 12571.0279 111429.98995 18707.77963333 14571.36145 13121.9746 115251143 atzA Organic Remediation Herbicides related compound Clostridium difficile 630 5948.4657 10786.02453333 19110.5953 14286.58965 16868.9621 20945.24873333 6627.8554 9328.64796667 118698588 THL Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ambifaria MC40-6 5735.1042 15396.81275 14893.00805 23173.03636667 17989.7486 10462.83335 19756.6872 1729781 phenol_oxidase Carbon cycling Carbon degradataion Lignin Podospora anserina 3539.47525 84665050 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 6270.66255 8109.30893333 10406.9724 7255.86446667 16105.4581 58267754 glx Carbon cycling Carbon degradataion Lignin Cryptococcus neoformans var. neoformans JEC21 27821.0134 13885.63295 10484.3253 15075129 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium meliloti 5145.9449 25861.3069 33414.11983333 15243.4107 8596.3408 9114.09303333 8884.99855 126035129 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 8155.9965 8462.34695 9957145 phenol_oxidase Carbon cycling Carbon degradataion Lignin Polyporus ciliatus 16790.86816667 10755.7643 11399.2058 23305813 phenol_oxidase Carbon cycling Carbon degradataion Lignin Buergenerula spartinae 5013.9049 7469.8156 22697.9406 110830314 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 3348.97873333 29654.24626667 10658.89776667 46015.59826667 13518.38495 9869.26766667 6842.0274 76259979 TerC Metal Resistance Tellurium Chloroflexus aurantiacus J-10-fl 4099.58935 11645.30616667 42525138 linC Organic Remediation Pesticides related compound Bdellovibrio bacteriovorus HD100 5256.5946 7366.8123 9666.8368 9825.30625 8756.5979 4633558 nosZ Nitrogen Denitrification uncultured bacterium ProE 4377.75626667 1100896 ureC Nitrogen Ammonification 8153.38266667 25371.1553 10926.31195 39611.89896667 91777973 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 3704.44535 4665.1593 83972386 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 5622.9221 126635904 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 14950.03746667 56798377 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 6746.32005 60108.71853333 13310.0021 8723.4487 9739.8164 13650.73475 14325430 linB Organic Remediation Pesticides related compound Thermoplasma volcanium GSS1 13853.72746667 16733.6515 124377266 gyrB other category Phylogenetic marker Aeromonas sharmana 8247.6222 9804.2589 11252.6004 158138865 narG Nitrogen Denitrification uncultured bacterium 8778.29163333 8670.05283333 28751.47526667 25979.05533333 8010.55066667 6562.5752 9987.8398 121699822 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 3066.1066 13278.3228 9442.2504 26991152 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida KT2440 4021.62145 7412.18485 82410435 ureC Nitrogen Ammonification Nitrosospira multiformis ATCC 25196 6649.7896 10217.5342 10567.57085 23267.3765 24328.39736667 16343.579 7924.23805 12449.55976667 90579752 TerC Metal Resistance Tellurium Vibrio angustum S14 6865.94405 33265.05395 17635.84526667 71366297 pulA Carbon cycling Carbon degradataion Starch Nocardioides sp. JS614 3167.6442 153884242 CadA Metal Resistance Cadmium Ralstonia pickettii 12D 10565.22533333 7436.42365 35199.31445 112463111 nirK Nitrogen Denitrification uncultured bacterium 2901.72776667 6852.76416667 126699806 cda Carbon cycling Carbon degradataion Starch Clostridium difficile 630 32723.5385 37435.4059 27839.224 14026.4481 99030472 ppk Phosphorus Phosphorus utilization uncultured bacterium 19088.82465 3317.2855 12245.9614 4178.46435 10964.6763 7290.4533 83651670 czcC Metal Resistance Cadmium,Cobalt,Zinc Burkholderia thailandensis E264 2596.31375 6206.99656667 5973.71283333 8686.11685 6175.00425 26986066 sox Sulphur Sulphur oxidation Marinobacter sp. HY-106 5447.3344 5636.2028 16264.4144 15095.91333333 68007179 dehH109 Organic Remediation Chlorinated solvents Exiguobacterium sibiricum 255-15 4396.6162 14276809 dsrB Sulphur sulfite reductase Desulfotomaculum putei 5591.2841 10149.3052 77639359 tutFDG Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus metalliredigenes QYMF 3328.20736667 4602.49535 3774.15085 109455375 alkK Organic Remediation Others Roseobacter denitrificans OCh 114 6810.6663 6494.59325 28736.5607 15657.51193333 110639552 pimF Organic Remediation Aromatics Aromatic carboxylic acid Cytophaga hutchinsonii ATCC 33406 3875.20073333 12005.98595 19234.02846667 15467.9904 10140.68335 119820868 endochitinase Carbon cycling Carbon degradataion Chitin Stenotrophomonas maltophilia R551-3 3922.254 5766.38946667 99030601 ppk Phosphorus Phosphorus utilization uncultured bacterium 12290.3494 18643.39646667 76428.94865 25888.0256 24877.2193 40106.4399 149908784 pulA Carbon cycling Carbon degradataion Starch Moritella sp. PE36 20634.0318 8870.26543333 16720.9197 8137.3581 5679.48965 7569.8367 78224126 cytochrome Energy process Energy process Geobacter metallireducens GS-15 3265.16005 6204.3252 11038.9017 6034.17975 4398.0358 148474700 nrfA Nitrogen Dissimilatory N reduction uncultured bacterium 18531.41526667 26688.04555 24275.82426667 57425.7023 10250.26445 114536590 pimF Organic Remediation Aromatics Aromatic carboxylic acid Fulvimarina pelagi HTCC2506 7388.09265 9397.27363333 14913.65433333 13261.6429 114767497 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 5795.18395 3332.21135 116625736 ppx Phosphorus Phosphorus utilization Solibacter usitatus Ellin6076 3694.83435 23682.11356667 3774.2719 8308.7231 109897222 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c 4007.16775 31837.2333 12559.595 49857.5465 12614.4755 6081.49076667 106635938 catechol_B Organic Remediation Aromatics Other aromatics Rhizobium sp. ZJF08 4666.8999 24065.89715 19179.6518 5123.66325 118757826 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Shewanella pealeana ATCC 700345 2916.30786667 10819.0412 13383.18255 146407643 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 2745.7118 77962720 tfdA Organic Remediation Aromatics Chlorinated aromatics Yersinia mollaretii ATCC 43969 8328.84623333 13662.4407 53021.62355 51702.7127 48643.44406667 10538.47175 13301.2611 25569.48583333 46520025 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5522.90045 8533.1998 33323.61513333 8368.0259 15185.72613333 7334.0576 14157.0889 10928.539 87281179 nirS Nitrogen Denitrification uncultured bacterium 5116.70826667 4861.5426 21912.81003333 16139.9321 46561.61066667 9283.64165 157285375 nosZ Nitrogen Denitrification uncultured bacterium 14135.20055 5770.58265 118001963 proO Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 4244.3199 5946.7088 26773.4454 54588.816 55909.273 14255.78203333 6749.03316667 106771323 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus sp. RS-1 3663.7756 114564074 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 4708.0832 86165092 ZntA Metal Resistance Zinc Marinomonas sp. MED121 4195.94953333 4696.67856667 158138771 napA Nitrogen Dissimilatory N reduction uncultured bacterium 4319.4391 142850468 czcD Metal Resistance Cadmium,Cobalt,Zinc Aeromonas salmonicida subsp. salmonicida A449 16559.03303333 18310.03466667 55689.90526667 64138.79833333 61232.04256667 9467.20845 9716.5974 156524374 gyrB other category Phylogenetic marker Vibrio harveyi ATCC BAA-1116 2822.8706 4022.37925 92430144 exaA Organic Remediation Chlorinated solvents Methylomicrobium sp. HG-1 3740.7439 7566.0786 23604.6861 33987.39043333 7996.2086 6430.01456667 88710185 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Flavobacteriales bacterium HTCC2170 11432.80263333 14801.7111 18313.14096667 9185.43505 13571.97675 47096041 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes str. 1/2a F6854 3565.96895 5542.88205 12560.9673 8039.73865 7556.3972 127511504 cytochrome Energy process Energy process Shewanella loihica PV-4 2384.7664 149739483 CusA Metal Resistance Copper Vibrio cholerae MZO-2 6745.77665 17884.8289 7770.72776667 104779320 gyrB other category Phylogenetic marker Pseudomonas entomophila L48 5025.17215 4644.83236667 22294368 gyrB other category Phylogenetic marker Thermosynechococcus elongatus BP-1 5388.13965 12023.2881 15582.6559 21380.51696667 118424494 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8625.33323333 15409.14313333 78513276 TerC Metal Resistance Tellurium Bradyrhizobium sp. BTAi1 4877.2002 7794.81963333 10178.4501 19199.1757 12774.3657 50954654 TerC Metal Resistance Tellurium Leifsonia xyli subsp. xyli str. CTCB07 3758.9245 6210.3141 15171.4518 9810.47916667 116694355 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 4221.5566 10065.66255 9184.3027 10320.21285 6821.03745 8049.83325 126035161 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 2953.0831 3772.70875 91974621 ChrA Metal Resistance Chromium Rhodopseudomonas palustris BisB5 4211.62313333 5567.3868 10441635 akbF Organic Remediation Aromatics BTEX and related aromatics Comamonas sp. JS765 3534.82465 9768.55266667 119371712 narG Nitrogen Denitrification Propionibacterium acidipropionici 7412.72143333 10107.11426667 34017214 dsrB Sulphur sulfite reductase uncultured bacterium 4657.34576667 3675.10825 56809539 nifH Nitrogen Nitrogen fixation uncultured bacterium 5786.571 26475.9172 43343.88905 88177761 tftH Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 11480.32166667 14572.084 6127.2296 7692.19785 39981876 gyrB other category Phylogenetic marker Geobacter sulfurreducens PCA 2340.93345 72559.08735 14669.27443333 29864.19446667 8413.88205 106767327 xylA Carbon cycling Carbon degradataion Hemicellulose Clostridium phytofermentans ISDg 5203.13725 14614.89366667 14558.55425 28643.81446667 154251442 tfdA Organic Remediation Aromatics Chlorinated aromatics Parvibaculum lavamentivorans DS-1 12731.58233333 27268.1712 30802.66833333 12419.9536 13188.20723333 42494410 cmuA Organic Remediation Chlorinated solvents uncultured bacterium 3844.3491 4584.41315 90415650 ureC Nitrogen Ammonification marine gamma proteobacterium HTCC2207 3492.79405 4568.68816667 83701116 nosZ Nitrogen Denitrification uncultured bacterium 3126.91415 3184.6297 7707.66725 70992365 pheA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 5753.06665 16042.3453 51462.70846667 26112.30313333 8904.24813333 13237.28346667 8982.88893333 146340960 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 3446.5438 90591036 xylA Carbon cycling Carbon degradataion Hemicellulose Flavobacterium johnsoniae UW101 4960.0027 25735.83733333 15560.58073333 7642.99615 12708.44155 126093275 tftH Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 5856.8818 68169267 ArsC Metal Resistance Arsenic Desulfitobacterium hafniense DCB-2 2566.0321 67439.4828 32307889 narG Nitrogen Denitrification uncultured bacterium 2707.21175 4064.00033333 9616.90825 9409.7178 62512287 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4988.38733333 14804.20306667 16995.56395 14238.54386667 59518.07576667 17971.99655 26716.61365 24987.7549 126641263 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 3542.75415 23806.76295 24111.049 118703758 gyrB other category Phylogenetic marker Sphingomonas wittichii RW1 8760.72643333 10740.02206667 15909.69125 11892.8826 34152.73636667 145256320 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus niger CBS 513.88 6474.77295 70730495 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 6214.6279 16031.09355 14571.98066667 10444.47625 11246.9238 17565.59936667 59479840 amyA Carbon cycling Carbon degradataion Starch Vibrio fischeri ES114 4757.07985 4553.24285 36521.47693333 8451.9401 22273.78223333 73537968 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha JMP134 18653.98483333 6645.2514 6232.00685 169293 mnp Carbon cycling Carbon degradataion Lignin Phanerochaete chrysosporium 5093.25975 7003.95195 16730.96985 83953756 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 2594.06525 6315.12996667 10068.5746 5650.83105 6511.5911 6713.3319 8006.2605 37954312 nifH Nitrogen Nitrogen fixation uncultured bacterium 3286.81135 62386.8152 62551.66993333 12599.04695 108766036 atzA Organic Remediation Herbicides related compound Rubrobacter xylanophilus DSM 9941 4760.4531 11576.2937 44087.63503333 27388.29273333 7559.92133333 115250842 dsrB Sulphur sulfite reductase Clostridium difficile 630 7750.6861 9781.6747 7088.58585 14763.10945 10172.18215 158138812 napA Nitrogen Dissimilatory N reduction uncultured bacterium 5886.68245 10488.7788 18297.069 15601.97405 66801911 narG Nitrogen Denitrification unidentified bacterium 4721.5333 15579.217 32825.71446667 9727.6632 17861.44116667 37692.83286667 17003.481 73763090 nirK Nitrogen Denitrification uncultured bacterium 2846.5538 109699460 vanA Carbon cycling Carbon degradataion Others Pseudoalteromonas atlantica T6c 9958.8658 118435893 rubisco Carbon cycling Carbon fixation Stappia aggregata IAM 12614 2940.6376 89333434 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 11835.2085 18670.48975 25380.8458 10370.60745 10640455 CopA Metal Resistance Copper Thermoplasma acidophilum 8029.94555 20558.20323333 16510.07935 8832.37415 89082466 CopA Metal Resistance Copper Oceanospirillum sp. MED92 3508.86073333 7920.1986 13726.6665 11576.12256667 8760.57343333 5144.05356667 90419555 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas sp. SI85-9A1 4114.68243333 4963.40085 15386.2353 11763.5249 12281.56695 7387.5059 82719896 CopA Metal Resistance Copper Shewanella sp. W3-18-1 9297.33245 35182.6266 10707.1195 9449.73606667 111071930 nirK Nitrogen Denitrification uncultured bacterium 6491.8764 13648.03056667 16989.08895 37585.94286667 26001.38906667 8149.32485 16907.89146667 151360019 gyrB other category Phylogenetic marker Kineococcus radiotolerans SRS30216 19703.62215 114778935 CopA Metal Resistance Copper Mariprofundus ferrooxydans PV-1 4939.47725 13147.1454 25297.954 146348553 nifH Nitrogen Nitrogen fixation Clostridium kluyveri DSM 555 3905.84475 13745.38283333 119472265 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 5166.69806667 14522.5089 38498.4908 21859.4777 10840.45353333 48094247 Xamo Organic Remediation Other Hydrocarbons Pseudomonas sp. OX1 8420.89993333 12973.14965 20343.47006667 12550.95573333 9474.12646667 82801427 alkB Organic Remediation Other Hydrocarbons bacterium alkW40 20803.63346667 65421.5634 50838.8715 15545.22295 14423.14415 154104637 nplT Carbon cycling Carbon degradataion Starch uncultured microorganism 11884.1228 9412.25176667 32816.5905 17321.22723333 6711.13985 7486.6182 146324465 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus fumigatus Af293 4150.5559 3727.13805 5356.45753333 23304312 mnp Carbon cycling Carbon degradataion Lignin Heterobasidion annosum 4459.6253 10680.47015 55206.96405 44663.5701 73762782 nirK Nitrogen Denitrification uncultured bacterium 2979.37345 6862.50275 145218230 TerC Metal Resistance Tellurium Mycobacterium gilvum PYR-GCK 5595.3316 110336200 TerC Metal Resistance Tellurium Acidovorax sp. JS42 4066.86733333 7881.253 35022.12283333 11360.9729 19328.7136 5659.82575 126105513 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 7194.06066667 127514746 CopA Metal Resistance Copper Shewanella loihica PV-4 5224.95425 9131.2098 25108.79555 9850.3283 9298.7144 10808.33465 19090.83043333 85706531 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 3425.5027 8503.69793333 125498964 pulA Carbon cycling Carbon degradataion Starch Streptococcus sanguinis SK36 23220.3533 17545.1313 19425.11885 11073.32416667 7095.5267 118168639 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium smegmatis str. MC2 155 3796.81775 3389.96706667 7983.5373 91807182 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 33244.71596667 29565.7829 20929.55716667 6412.98065 62004678 endochitinase Carbon cycling Carbon degradataion Chitin Trichosporon cutaneum 18586.35433333 19809.9579 25190.98155 33393.48846667 37657.64453333 7186.74483333 7027.3853 108804680 Apc Organic Remediation Aromatics BTEX and related aromatics Rubrobacter xylanophilus DSM 9941 7934.36466667 9869.9063 23378.90116667 16173.58236667 23043.48823333 7053.38226667 13795.3948 108781097 TerZ Metal Resistance Tellurium Yersinia pestis Antiqua 2864.79055 6553.22213333 8567.91045 4550.48163333 5881.6517 78192166 phenol_oxidase Carbon cycling Carbon degradataion Lignin Pleurotus eryngii 6186.50055 25338.7241 105897501 ChrA Metal Resistance Chromium Burkholderia cenocepacia AU 1054 3390.95395 89899662 CopA Metal Resistance Copper Rhodoferax ferrireducens T118 6537.06446667 71833774 gyrB other category Phylogenetic marker Helicobacter bizzozeronii 5629.20583333 8723.025 24593.2837 8998.50025 20861.28233333 10917.97255 7547.034 11244.39456667 117981619 trzN Organic Remediation Herbicides related compound Burkholderia phymatum STM815 39689.6267 21940.81735 33258.22285 6452.9521 50982404 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 3365.5352 6887.72575 8751.0191 6711.02225 19070024 silC Metal Resistance Silver uncultured bacterium 2959.21015 118010934 catB Organic Remediation Aromatics BTEX and related aromatics Roseiflexus castenholzii DSM 13941 3563.48453333 10714.96306667 22333.9909 12399.88036667 12938.61203333 77389452 catechol_B Organic Remediation Aromatics Other aromatics Rhodobacter sphaeroides 2.4.1 2982.2557 18626.68075 21504.7108 146307224 cytochrome Energy process Energy process Pseudomonas mendocina ymp 7293.5216 11082.957 19466.78576667 29139.7525 150007328 nrfA Nitrogen Dissimilatory N reduction Parabacteroides distasonis ATCC 8503 20728.90193333 25227.5121 43332.86505 17204.67086667 18326.0051 7033.4656 146410775 CadA Metal Resistance Cadmium Bradyrhizobium sp. BTAi1 4822.53575 14669.171 27442.39733333 39216.98113333 116743260 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4767.69205 23978263 gyrB other category Phylogenetic marker Fischerella muscicola 3517.45295 6402.9649 8951.9932 118746435 hydrogenase Energy process Energy process Geobacter lovleyi SZ 3849.7802 11879.1645 18115.08183333 21629.9192 6333.49435 5468.1775 7601.72195 12657483 nifH Nitrogen Nitrogen fixation Paenibacillus durus 9000.37625 38991.19395 74038424 nirS Nitrogen Denitrification uncultured bacterium 3401.8287 16210.88675 41398796 czcD Metal Resistance Cadmium,Cobalt,Zinc Mycobacterium avium subsp. paratuberculosis K-10 3654.52645 8177.5056 3826.62645 118172221 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 3115.08076667 4816.66013333 40636.312 19899.19275 5379.7081 120401356 TerC Metal Resistance Tellurium Mycobacterium vanbaalenii PYR-1 53244.0596 20692.81596667 9508.19896667 110818.18145 68345965 atzA Organic Remediation Herbicides related compound Pseudomonas fluorescens Pf-5 5434.5106 12780.75646667 158445254 pulA Carbon cycling Carbon degradataion Starch Faecalibacterium prausnitzii M21/2 8592.40503333 5923.8392 113900683 atzA Organic Remediation Herbicides related compound Herpetosiphon aurantiacus ATCC 23779 11270.02615 55378701 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 3807.139 6278.3873 158147977 mcrA Carbon cycling Methane Methane production uncultured archaeon 13322.6307 84695733 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 9272.3837 24018.92746667 6086.6879 26278834 narG Nitrogen Denitrification uncultured bacterium 8050.0813 8125.4639 5939.1256 157404160 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 6157.5612 7569.2185 68055013 CopA Metal Resistance Copper Exiguobacterium sibiricum 255-15 2693.98255 10615.711 126317443 nitro Organic Remediation Others Pseudomonas putida GB-1 5643.75573333 9421.93046667 9565.6563 15644.9415 4220.4578 145217977 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK 6302.94215 8248.4095 17642.7194 8923.49945 90408654 ppx Phosphorus Phosphorus utilization Psychromonas sp. CNPT3 3988.49745 12502.62406667 110283129 CadA Metal Resistance Cadmium Mesorhizobium sp. BNC1 20975.1839 7792.28823333 21667.4296 6377.45533333 78696893 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 3520.13126667 8136.102 7041.37155 116612264 TerC Metal Resistance Tellurium Arthrobacter sp. FB24 6598.34883333 7502.0075 21225631 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces coelicolor A3(2) 4171.0627 6125.84155 33385661 nifH Nitrogen Nitrogen fixation uncultured bacterium 4906.4641 89056342 CopA Metal Resistance Copper Jannaschia sp. CCS1 2850.76745 4141.7058 89896222 ZntA Metal Resistance Zinc Desulfitobacterium hafniense Y51 3411.6031 5822.9441 37726804 dsrA Sulphur sulfite reductase uncultured prokaryote 4848.918 25274.51415 32362.53766667 36612.9153 45148.892 10824.02595 8115.19055 7372.37126667 84780235 ppx Phosphorus Phosphorus utilization Sodalis glossinidius str. 'morsitans' 3561.02756667 9133.9612 56809531 nifH Nitrogen Nitrogen fixation uncultured bacterium 25069.9707 35157.53826667 58197.9844 32833.16663333 34676.8161 12613.25393333 41929.392 17741509 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 13116.13946667 15570.5298 88249.85813333 9382.72636667 26130.14546667 18906.4245 16594.28426667 38057.0393 27530056 gyrB other category Phylogenetic marker Legionella hackeliae 3512.11005 86280536 ppx Phosphorus Phosphorus utilization Rhizobium etli CFN 42 3476.20826667 26751.88133333 8910.74685 18536.6104 10699.25745 9376.74073333 146278834 cytochrome Energy process Energy process Rhodobacter sphaeroides ATCC 17025 5330.715 5900.96575 22391.8512 10633.25055 21905.08476667 87135383 mauAB Organic Remediation Herbicides related compound Novosphingobium aromaticivorans DSM 12444 3243.6038 10774.2333 6048.1653 9216.62915 145617966 merB Metal Resistance Mercury Geobacter bemidjiensis Bem 3873.0135 118047447 pulA Carbon cycling Carbon degradataion Starch Chloroflexus aggregans DSM 9485 7513.2843 7387.3803 29831.59563333 17934.9051 30944.80365 27376013 amyA Carbon cycling Carbon degradataion Starch Bradyrhizobium japonicum USDA 110 7499.5003 17509.2018 23480.7143 91690047 tphB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 2536.84025 4015.17065 86137104 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 4950.95213333 10285.7966 89512926 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4696.4336 9191.3902 16118.89343333 8748.43905 8296.49905 118465791 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium avium 104 6107.88153333 21201.42885 7754.24996667 19077.90666667 56798863 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 5217.93165 5725.91145 11799.60763333 11530.72636667 29466070 norB Nitrogen Denitrification uncultured bacterium 11838.5395 8593.0687 12410.6105 86156434 gyrB other category Phylogenetic marker Anaeromyxobacter dehalogenans 2CP-C 4889.15455 8754.47676667 20445.7298 5659.63875 10193.3788 145047746 sox Sulphur Sulphur oxidation Polynucleobacter sp. QLW-P1DMWA-1 3401.63825 149807732 linB Organic Remediation Pesticides related compound Moritella sp. PE36 3971.1417 118046314 xylF Organic Remediation Aromatics BTEX and related aromatics Chloroflexus aggregans DSM 9485 3169.58555 92117653 pcc Carbon cycling Carbon fixation Nitrobacter hamburgensis X14 3206.1494 5521.2547 8942.27825 8006.42146667 149783387 nirS Nitrogen Denitrification uncultured bacterium 2438.55545 6659.94845 18781.76095 10343.4897 24984794 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 4502.4526 9687.441 119446851 mer Metal Resistance Mercury Alteromonadales bacterium TW-7 5631.91913333 7220.69965 72454.96825 56381.1905 8582.48605 89199977 TerZ Metal Resistance Tellurium Bacillus cereus subsp. cytotoxis NVH 391-98 4648.44466667 27244.0988 21935.81535 11225.79 8611.6495 150006666 ArsC Metal Resistance Arsenic Bacteroides vulgatus ATCC 8482 7344.86593333 7754.8174 13114.41795 14287.3876 149733872 exochitinase Carbon cycling Carbon degradataion Chitin Eubacterium ventriosum ATCC 27560 14409.1396 17664.55106 17787.86916667 34411.43516667 10814.1365 3257353 rubisco Carbon cycling Carbon fixation Pyrococcus horikoshii OT3 12458.38086667 64559.7499 6479.4387 14271.0875 25631.7629 146190990 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 16029.49463333 16458.41046667 152013640 phenol_oxidase Carbon cycling Carbon degradataion Lignin Fusarium oxysporum 9699.4938 28721.342 19245.62755 30322.4119 12289.4354 8009.56315 68304928 xylM Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium BAC13K9BAC 3900.3475 31713.83565 14774.94586667 35152.1551 145622070 pulA Carbon cycling Carbon degradataion Starch Petrotoga mobilis SJ95 4918.414 41409360 pulA Carbon cycling Carbon degradataion Starch Mycobacterium avium subsp. paratuberculosis K-10 4912.1865 8098.57595 6250.331 116693468 limEH Carbon cycling Carbon degradataion Others Burkholderia cenocepacia HI2424 4028.5885 5295.2809 58373376 lip Carbon cycling Carbon degradataion Lignin Phlebia radiata 7889.65205 57241791 CopA Metal Resistance Copper Campylobacter lari RM2100 6578.00665 11055.96605 15238.06705 16049.83863333 21886618 todC Organic Remediation Aromatics BTEX and related aromatics Thauera sp. DNT-1 5294.8606 5305.44955 6689529 mer Metal Resistance Mercury Xanthomonas campestris 2171.83465 29734.00955 24310.4626 35210333 gyrB other category Phylogenetic marker Alicyclobacillus sp. MIH 332 12146.91963333 22005.02666667 12546.79455 13061.50615 26574.35413333 18146819 pectinase Carbon cycling Carbon degradataion Pectin Aspergillus oryzae 4009.103 4501.86455 42475.1107 23745.32595 34853.45266667 62149134 nifH Nitrogen Nitrogen fixation uncultured bacterium 3046.0525 22249.75876667 7572.66973333 37525916 adpB Organic Remediation Pesticides related compound Photorhabdus luminescens subsp. laumondii TTO1 2860.67755 4237.19695 8642.25 15493.93865 22648.8778 111059700 mnp Carbon cycling Carbon degradataion Lignin Phaeosphaeria nodorum SN15 6424.58193333 9117.056325 9915.20485 91696320 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 3974.97245 9162.77903333 25177.55833333 7902.80005 9538.95015 12521.37865 82618401 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5246.6023 23310.4789 60469.38345 22908.59843333 3040.0379 46308018 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3824.9227 11066.102 60727.3967 35992.26703333 14008.77423333 7616.9143 10142.8829 24276.95463333 139004122 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 6212.73375 6375.30096667 77359534 SilA Metal Resistance Silver Pseudoalteromonas haloplanktis TAC125 3799.303175 4774.31535 15880.5631 12726.614 5763.07933333 148628316 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 5865.9209 16726.182 22852.2053 6281.22476667 148547944 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 5565.01416667 10040.82835 9964.4211 16831.06216667 49237672 gyrB other category Phylogenetic marker Bartonella henselae str. Houston-1 5814.8136 116804574 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 6562.8283 9044.8944 16259.16085 114190439 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 4649.85163333 85773453 TerC Metal Resistance Tellurium Anaeromyxobacter dehalogenans 2CP-C 3736.38593333 15697.04945 6504.15315 114568734 CopA Metal Resistance Copper Maricaulis maris MCS10 7889.09595 16596.93436667 25544.3078 13247.384 6460273 ZntA Metal Resistance Zinc Deinococcus radiodurans R1 10318.0799 6729.3829 7966.1707 9764.3917 67851279 nifH Nitrogen Nitrogen fixation Clostridium thermocellum ATCC 27405 3070.75195 6535.89955 11608.94815 6384.55076667 87283942 ureC Nitrogen Ammonification Synechococcus sp. WH 5701 5911.45745 21086.44006667 9881.00956667 30399.6669 117998411 tftH Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 26624.2366 12003.0025 24093.399975 14087.174 7408.4143 8193.0468 149910017 endochitinase Carbon cycling Carbon degradataion Chitin Moritella sp. PE36 5276.79295 14234.23416667 25210.0888 16578.1637 9202.64485 6180.40025 81251663 nirS Nitrogen Denitrification uncultured organism 3222.57325 53603.38855 17332.49745 43667.70055 27847.93183333 35687.59633333 84696894 nitA Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 3919.7302 14242.72065 14512.13105 5602.3958 5244.6005 139003464 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4407.2768 21520.89195 118592923 PobA Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 6809.0858 12404.4186 8891.3326 148499661 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 3880.17855 83724530 nasA Nitrogen Assimilatory N reduction Ralstonia solanacearum UW551 8047.5035 14662.5498 18142.8951 20009.8963 4355.5647 6872.6133 12490.4424 3821797 exochitinase Carbon cycling Carbon degradataion Chitin Bacillus circulans 4401.05905 5108.13945 15359.124625 13963.22176667 16971.17838 5414.07635 116196058 czcD Metal Resistance Cadmium,Cobalt,Zinc Chaetomium globosum CBS 148.51 7044.98616667 3475.8525 41862.50053333 12601.68966667 9350.01046667 36787566 cah Organic Remediation Others Photorhabdus luminescens subsp. laumondii TTO1 3848.17595 10032.93285 146299761 xylA Carbon cycling Carbon degradataion Hemicellulose Flavobacterium johnsoniae UW101 34794.36666667 19797.94986667 22744.8248 29000.8921 53621.05525 21876.71836667 20114.0397 10953.69103333 145236288 nitro Organic Remediation Others Aspergillus niger 4807.2856 14929.01235 56476471 tutFDG Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 3678.20396667 6378.09066667 15739.9588 7636.8633 17067.18083333 12186.48685 12848.26743333 119951819 nreB Metal Resistance Nickel Arthrobacter aurescens TC1 10079.51936667 12787.91046667 14581.81725 8426.5137 7869.4994 46307864 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 2792.9905 157837416 pcaG Organic Remediation Aromatics Other aromatics Chromohalobacter sp. HS2 8196.83515 9388.46715 27465.0767 8416.30205 116181820 glx Carbon cycling Carbon degradataion Lignin Chaetomium globosum CBS 148.51 2874.0795 95111342 ArsC Metal Resistance Arsenic Pseudomonas entomophila L48 2244.36825 10349.5562 21525.23523333 28980.4243 13752.8914 17834.50806667 11270.577 21648295 dsrA Sulphur sulfite reductase Chlorobium tepidum TLS 4790.27763333 13431.9643 28709.6127 8795.1687 31686.38373333 69283912 czcD Metal Resistance Cadmium,Cobalt,Zinc Kineococcus radiotolerans SRS30216 2738.30525 3919.7115 121530927 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12J 5669.41873333 26703.6494 168160.3787 126699239 TerD Metal Resistance Tellurium Clostridium difficile 630 39912.0826 36782.2734 35021.70013333 53609.26905 23614.5816 6356.1561 73487247 rubisco Carbon cycling Carbon fixation uncultured bacterium 3476.26165 6271.64736667 15869.3038 11277.8975 6761.00613333 126593829 TerZ Metal Resistance Tellurium Bacillus sp. B14905 10709.13925 11132.2007 23494148 benAB Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 7474.05405 21246.0889 10312.84673333 84691156 amyA Carbon cycling Carbon degradataion Starch Parvularcula bermudensis HTCC2503 3608.92305 4548.3542 6906.0965 7474.41826667 5409.1683 91215255 gyrB other category Phylogenetic marker Psychroflexus torquis ATCC 700755 4949.40623333 10804.12356667 20049.78643333 14872.17676667 9345.1642 154162903 CopA Metal Resistance Copper Xanthobacter autotrophicus Py2 3403.6784 7249.3767 11897.7276 20064.32225 10174.03655 126470044 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous 30592.72586667 76558660 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 9588.13473333 27101.03123333 26672.07113333 13513.28123333 7406.1319 8630.26865 20951.127 55229540 atzA Organic Remediation Herbicides related compound Haloarcula marismortui ATCC 43049 5221.74365 9207.30086667 13815793 pcpE Organic Remediation Herbicides related compound Sulfolobus solfataricus P2 4233.592 14961.1322 9701.16055 21661.37973333 9362.4084 84622002 czcD Metal Resistance Cadmium,Cobalt,Zinc Xanthomonas oryzae pv. oryzae MAFF 311018 3530.45803333 11559.7013 37416.189 27493.08485 31239.4056 106760729 czcD Metal Resistance Cadmium,Cobalt,Zinc Psychromonas ingrahamii 37 5155.56965 6069.24245 13037.53865 32307929 narG Nitrogen Denitrification uncultured bacterium 3483.28015 4990.67593333 11546.62595 18196.19413333 11675.88333333 9165.18956667 85670856 nhh Organic Remediation Aromatics Nitoaromatics Roseovarius sp. 217 4269.38875 139003174 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 3725.86713333 14022193 nhh Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 5138.9995 9883.66826667 17321.55475 15077.59863333 12991.16183333 7869.52565 7346.97665 133738725 SilA Metal Resistance Silver Herminiimonas arsenicoxydans 3492.9072 37236.34273333 15080.5806 22144.1253 6437.7553 6263.50955 26278848 narG Nitrogen Denitrification uncultured bacterium 3705.3556 9550.55646667 4338.1276 154280953 tftH Organic Remediation Aromatics Chlorinated aromatics Ajellomyces capsulatus NAm1 2778.7367 5945.79635 145317378 tfdA Organic Remediation Aromatics Chlorinated aromatics Enterobacter sp. 638 5924.6912 110596807 CopA Metal Resistance Copper Chlorobium ferrooxidans DSM 13031 7447.7234 5235.386 15301.7944 29338620 catB Organic Remediation Aromatics BTEX and related aromatics Bacteroides thetaiotaomicron VPI-5482 3806.29563333 30006.9362 46013.07296667 4605.93636667 145309487 gyrB other category Phylogenetic marker Alicyclobacillus sacchari 6048.2007 4935.97785 31165.27163333 485794 rubisco Carbon cycling Carbon fixation Synechococcus sp. PCC 7002 4965.05283333 7175.141 32885.53466667 40678.38873333 2627152 catechol_B Organic Remediation Aromatics Other aromatics Acinetobacter sp. YAA 5115.82963333 15124.34535 12822.56105 8759.0639 23022.4469 20100.2964 8853.59266667 115259972 nhh Organic Remediation Aromatics Nitoaromatics Rhizobium leguminosarum bv. viciae 3841 2664.061 8627.95455 18254.543 12861.69313333 16710.589 7312.34485 7904.13616667 74484332 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 8102.70976667 34984.43463333 9814.83303333 10798.2252 115395858 endoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus terreus NIH2624 3956.50006667 8624.1552 89899097 vanA Carbon cycling Carbon degradataion Others Rhodoferax ferrireducens T118 5394.70743333 7863.2923 18855.08005 12694.3863 11657.59903333 5621.28165 111611644 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 4246.34363333 4348.1558 14613.83005 8606.4971 8333.98323333 5911.2447 114548443 TehB Metal Resistance Tellurium alpha proteobacterium HTCC2255 8256.41046667 24753.86156667 12667.14806667 9506.09 8628.4192 1771481 napA Nitrogen Dissimilatory N reduction Pseudomonas sp. 3056.9127 14683.06895 19167.66365 29466084 norB Nitrogen Denitrification uncultured bacterium 3528.30356667 6847.1506 15243.58905 134298214 TerZ Metal Resistance Tellurium Desulfotomaculum reducens MI-1 4085.1249 6144.66245 11256.5076 55791916 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 2954.5311 13596.20355 6940.00013333 139004179 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5281.19506667 23041.20685 11694.44266667 8508.16053333 27351572 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium japonicum USDA 110 7119.1092 10794.0942 7631.36875 4736.1845 7643.21555 119459315 mdlC Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2080 3786.3348 8624.44275 86169565 gyrB other category Phylogenetic marker Leuconostoc pseudomesenteroides 56697.14565 36558.42963333 88804.0637 11248.4275 16869.539 40905.93013333 36981.16886667 77378622 nirS Nitrogen Denitrification uncultured bacterium 4146.6148 16214.44453333 114048172 cytochrome Energy process Energy process Shewanella sp. MR-7 3029.00955 6835.8136 124271055 vdh Carbon cycling Carbon degradataion Others Sphingomonas paucimobilis 6636.96655 6127.9097 113733431 ara Carbon cycling Carbon degradataion Hemicellulose Caulobacter sp. K31 3923.4633 2654356 dehH109 Organic Remediation Chlorinated solvents Rhizobium sp. 4283.99516667 6936.65546667 3676.1729 6573.7762 5718.68305 112463041 nirK Nitrogen Denitrification uncultured bacterium 6236.47065 5253.54156667 6937.16265 116334775 ara Carbon cycling Carbon degradataion Hemicellulose Lactobacillus brevis ATCC 367 3647.0226 6072.5837 10075.4338 15054478 endoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus kawachii 12141.92653333 16189.69163333 3563.88795 19070841 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 2490.746 3905.13675 34239.56605 37987.72486667 146342566 SilA Metal Resistance Silver Bradyrhizobium sp. ORS278 5375.7779 23849.86305 11578.69203333 148474808 napA Nitrogen Dissimilatory N reduction uncultured bacterium 8243.17515 145240735 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus niger 5014.42 88778189 pimF Organic Remediation Aromatics Aromatic carboxylic acid Reinekea sp. MED297 17005.1052 34707.57266667 13480.68186667 23652.91163333 27032.98106667 90954619 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5162.6157 13663.11805 34572.31026667 11416.783 21827.12193333 5383.64635 6500.69056667 8221.66603333 120431232 phenol_oxidase Carbon cycling Carbon degradataion Lignin Monilinia fructigena 5836.5058 11643.7908 24651.4813 13551.9048 18063.13393333 146451004 cellobiase Carbon cycling Carbon degradataion Cellulose Lodderomyces elongisporus NRRL YB-4239 14057.11993333 9505.02405 28560.2721 34075.59373333 120593979 xylL Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 8502.75145 4934.28583333 8838.29415 148292159 vdh Carbon cycling Carbon degradataion Others Pseudomonas putida 4357.288 32308039 narG Nitrogen Denitrification uncultured bacterium 3080.37395 84181209 rubisco Carbon cycling Carbon fixation Thiomicrospira kuenenii 4032.75685 9882.7754 38352.64115 33501.02036667 78214144 nasA Nitrogen Assimilatory N reduction Synechococcus sp. CC9605 7898.14313333 10612.2638 149919796 trzN Organic Remediation Herbicides related compound Plesiocystis pacifica SIR-1 6848.37616667 8353.94206667 111149594 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 5037.94785 13556.21115 11203.7969 21135.1518 19356.227 19313.85253333 116804638 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 4028.1164 5991.01776667 21143.81915 116122570 TerC Metal Resistance Tellurium Leptospira borgpetersenii serovar Hardjo-bovis L550 3805.17535 47959.9769 24938.6193 9305.1979 11211.83463333 126660290 TerZ Metal Resistance Tellurium Cyanothece sp. CCY0110 40575.68693333 52021.29043333 31964.2961 37560.7316 28929.54393333 39049.80383333 118171750 gyrB other category Phylogenetic marker Mycobacterium smegmatis str. MC2 155 6344.3856 108764068 linB Organic Remediation Pesticides related compound Myxococcus xanthus DK 1622 5000.228 6660.52043333 12108.5536 10815.7411 7379.2246 146283407 trzN Organic Remediation Herbicides related compound Pseudomonas stutzeri A1501 3770.59303333 33668.39496667 14171.76145 9059.2734 6875.33895 7159.5827 113526420 nagG Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 3348.0572 8363.6885 83591026 CopA Metal Resistance Copper Moorella thermoacetica ATCC 39073 4566.15453333 14534.0177 42529.61886667 36224.0474 28207.9363 15040.61993333 23505.1869 83631795 endochitinase Carbon cycling Carbon degradataion Chitin Hahella chejuensis KCTC 2396 4551.5179 6911.9854 30097.30935 26369.2123 48711.37303333 6081.1681 124495022 phenol_oxidase Carbon cycling Carbon degradataion Lignin Polyporus brumalis 6380.5568 17041.5166 11785.9275 62421700 nifH Nitrogen Nitrogen fixation Anabaena sp. PCC 9109 3517.9318 12220.09445 35247.6873 32908.22166667 73661064 hydrogenase Energy process Energy process Dehalococcoides sp. CBDB1 3858.50655 30331.4499 39003.585 20099.13565 120597940 CopA Metal Resistance Copper Shewanella sp. W3-18-1 4622.4341 51743.5601 11164.25586667 35867.3064 158424656 ChrA Metal Resistance Chromium Azorhizobium caulinodans ORS 571 3386.49905 11178.0343 14171.81253333 85833997 atzA Organic Remediation Herbicides related compound Vibrio sp. MED222 7951.28096667 6409.22453333 24656.53906667 23910.15695 24522.65245 8517.93495 8864.3561 126348664 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces ambofaciens ATCC 23877 3016.2194 5719.00873333 9588.6047 6577.90695 75760872 alkK Organic Remediation Others Bacillus thuringiensis serovar israelensis ATCC 35646 16895.5365 30129.49 33327.0322 33059.54045 50337.40003333 49486.231 11877.93946667 36711.4688 126208877 alkK Organic Remediation Others Actinobacillus pleuropneumoniae L20 5430.3824 9287.9573 91709422 ZntA Metal Resistance Zinc Methylobacillus flagellatus KT 12117.34373333 20755.83203333 35447.86303333 25923.46683333 11738.8161 9047.179 31783.92923333 126645533 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Algoriphagus sp. PR1 4096.02985 4230.4624 9756.58883333 39650415 ChrA Metal Resistance Chromium Rhodopseudomonas palustris CGA009 3047.8421 7447.777 15957.4466 14133.3498 118051341 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 5946.08685 10754.63925 32845.55765 18258.95313333 54392.95805 12776.6596 56478726 ebdABC Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 3463.852 4828.79205 23688.4352 15613698 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus halodurans C-125 3831.0536 157692598 xylA Carbon cycling Carbon degradataion Hemicellulose Bacillus pumilus SAFR-032 3872.34245 7429.99485 10268.40415 6028.58085 88062841 ArsC Metal Resistance Arsenic Mesorhizobium loti 3871.9679 8193.48415 15607.9918 6941.70116667 11707.6376 106767370 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium phytofermentans ISDg 4600.26756667 8441.15023333 13379.46835 4431.70225 15276.87235 30884.40276667 123228322 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 13443.45635 19668.4298 8410.2769 17429262 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia solanacearum 7504.74476667 6377.01306667 15197.38275 10710.2955 8626.75813333 10379.06805 12174.5603 133737343 ChrA Metal Resistance Chromium Herminiimonas arsenicoxydans 9075.8988 9458.16065 108802398 akbF Organic Remediation Aromatics BTEX and related aromatics Mycobacterium sp. MCS 4328.77296667 6337.71386667 16125.2359 13097.4474 4332.2453 4323.73286667 6874.97835 27544668 gyrB other category Phylogenetic marker Fluoribacter bozemanae 20050.15155 110600624 ChrA Metal Resistance Chromium Geobacter sp. FRC-32 10488.2423 12502.40355 22062.3992 21262.74606667 6727.73056667 62468078 bco Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 7659.77896667 13637.44546667 44111.15813333 30413.05283333 5561.9527 15310.0062 21546.31763333 114767501 pcaG Organic Remediation Aromatics Other aromatics Roseovarius sp. HTCC2601 4486.2166 25345.94363333 33860.3472 9601.48405 10755.38015 118618327 trzN Organic Remediation Herbicides related compound Mycobacterium ulcerans Agy99 11668.45146667 4099106 gyrB other category Phylogenetic marker Mycoplasma arthritidis 4181.81205 9015.5563 23807.2646 12018.9152 11442.6567 3538.75955 9501.01535 83972408 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 4659.4577 34330302 ZntA Metal Resistance Zinc Chromobacterium violaceum ATCC 12472 2447.0475 110630942 nifH Nitrogen Nitrogen fixation uncultured soil bacterium 2901.31535 116293941 nifH Nitrogen Nitrogen fixation uncultured bacterium 3018.664 6237.2124 16930.12075 15166.1721 17452.3633 4770.9621 126389306 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 4634.6711 5905.84795 119369940 gyrB other category Phylogenetic marker uncultured bacterium 10671.1663 126387147 cbdA Organic Remediation Aromatics Chlorinated aromatics Acinetobacter baumannii ATCC 17978 3847.69825 5834.68565 16975.0824 26200.2456 78188927 CopA Metal Resistance Copper Chlorobium chlorochromatii CaD3 3478.81375 4538.5253 10189.83285 13336.42975 8774.71036667 157146418 dmsA Organic Remediation Others Citrobacter koseri ATCC BAA-895 3163.81345 24558.04585 157315865 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 5831.0097 26173.25213333 133740352 CopA Metal Resistance Copper Herminiimonas arsenicoxydans 18828.7192 10873.03173333 15489.6892 11669.06795 10939.38305 114227416 ppx Phosphorus Phosphorus utilization Alkalilimnicola ehrlichei MLHE-1 6408.35063333 7235.56065 16538.59055 20115.9461 9921.02686667 13080.30343333 149203209 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 5857.6698 24696.76815 17980.31936667 84694339 CueO Metal Resistance Copper Polaromonas naphthalenivorans CJ2 4198.81023333 10572.74765 5339.0212 28808852 pcc Carbon cycling Carbon fixation Vibrio parahaemolyticus RIMD 2210633 2904.97966667 5364.68766667 4926.702 149818977 czcA Metal Resistance Cadmium,Cobalt,Zinc Plesiocystis pacifica SIR-1 3350.775 3557.74376667 77812861 CopA Metal Resistance Copper Shewanella putrefaciens CN-32 9368.2725 8049.04055 10660.58315 33860.0884 153010026 dehH109 Organic Remediation Chlorinated solvents Ochrobactrum anthropi ATCC 49188 3022.98565 6928.80705 118051292 proO Organic Remediation Aromatics Other aromatics Comamonas testosteroni KF-1 7659.29 10254.9454 6708.43435 8029.43166667 119369938 gyrB other category Phylogenetic marker uncultured bacterium 7018.1147 15129.17146667 53394.45536667 10427.5763 113886794 czcA Metal Resistance Cadmium,Cobalt,Zinc Shewanella sp. MR-4 15046.73655 49530746 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 5644.8182 10643.4357 21452.66155 12361.4355 17806.34713333 157283885 czcD Metal Resistance Cadmium,Cobalt,Zinc Kineococcus radiotolerans SRS30216 8584.58285 124300765 gyrB other category Phylogenetic marker Erwinia mallotivora 11090.5945 89202879 rubisco Carbon cycling Carbon fixation Bacillus cereus subsp. cytotoxis NVH 391-98 7716.20203333 14748.93825 73541211 ChrA Metal Resistance Chromium Ralstonia eutropha JMP134 3221.581 5805.51376667 10177.7755 19964.06615 14854.30543333 62512281 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 35817.6494 30098.762 57563.7989 52198.65436667 33488.2899 9176.81835 11326.93915 156446889 nosZ Nitrogen Denitrification uncultured bacterium 5684.09265 18845.0531 7219.40885 8253.7619 145235215 phenol_oxidase Carbon cycling Carbon degradataion Lignin Aspergillus niger 7059.62376667 13323.8879 39972991 lip Carbon cycling Carbon degradataion Lignin Magnaporthe grisea 70-15 4427.42306667 10441.79166667 116695735 tftH Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 20511.5054 91717038 CopA Metal Resistance Copper Shewanella denitrificans OS217 3619.80603333 24983.79633333 127511282 cytochrome Energy process Energy process Shewanella loihica PV-4 13105.13305 15840078 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 25215.37073333 69647.4569 14973.58725 25066.71153333 22777.8625 17071.0401 30248.67163333 124005550 pcc Carbon cycling Carbon fixation Microscilla marina ATCC 23134 15197.24275 146188551 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3670.1453 119471890 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alteromonadales bacterium TW-7 6878.31325 12276.35846667 77970.26325 34531.15466667 38173.9367 12605.89515 22601.13105 70959472 lip Carbon cycling Carbon degradataion Lignin Coriolopsis gallica 11765.844 18024.2021 15961.09085 33779.94423333 10973.0957 11092.90355 153888442 CopA Metal Resistance Copper Ralstonia pickettii 12D 3941.94403333 5608.6761 21329.4871 16188.61195 14971.34356667 6293.4108 6794.5321 17385528 narG Nitrogen Denitrification uncultured bacterium 16384.69886667 14481.21473333 40629.9535 17136.08285 36841.40515 37307.71366667 14887.7863 25795.6114 117999746 tfdA Organic Remediation Aromatics Chlorinated aromatics Comamonas testosteroni KF-1 4498.50943333 15024.0509 20992.3114 6711.99825 68347101 nirK Nitrogen Denitrification Pseudomonas fluorescens Pf-5 3093.08225 7210.0839 7900.25385 6352.3189 88858182 czcA Metal Resistance Cadmium,Cobalt,Zinc Pseudoalteromonas tunicata D2 5207.01466667 14856.36986667 8112.97275 99083225 nifH Nitrogen Nitrogen fixation uncultured bacterium 3081.8559 13077.78116667 15726.81476667 27381147 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 11091.8167 13613.9936 39620.46296667 24003.7232 29317.983 11734.37713333 10174.0076 9615.84506667 154302286 tftH Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 5477.18133333 6892.54665 18853.1593 5663.7613 83025955 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 4282.9605 20234.6736 29226.70025 22514.24966667 5849.34715 144943374 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem 3504.43045 8997.9323 8959.00606667 94309707 phn Organic Remediation Herbicides related compound Ralstonia metallidurans CH34 3064.01455 16111.5631 9949.80895 91683143 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodopseudomonas palustris BisB5 6306.7606 8757.07315 124488141 napA Nitrogen Dissimilatory N reduction uncultured bacterium 11411.9779 19418.55325 118197434 nifH Nitrogen Nitrogen fixation hyperthermophilic methanogen FS406-22 7322.5343 19727.5813 29346088 czcC Metal Resistance Cadmium,Cobalt,Zinc Bacteroides thetaiotaomicron VPI-5482 3379.498 73539068 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 4301.81485 6168.7555 88062432 dsrA Sulphur sulfite reductase uncultured Desulfohalobiaceae bacterium 8375.87153333 22850.7403 33249.27936667 15469.52733333 148850789 ChrA Metal Resistance Chromium Bacillus sp. SG-1 4958.7613 158332310 nhh Organic Remediation Aromatics Nitoaromatics Azorhizobium caulinodans ORS 571 4922.34616667 7817.87836667 3420.51005 54026987 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 25218.4818 34438.5609 17421.978 19003.08146667 50030.3447 148518037 vdh Carbon cycling Carbon degradataion Others Methylobacterium sp. 4-46 3885.79195 17714.1533 21710.99733333 10848.6976 5581.44693333 119774348 cytochrome Energy process Energy process Shewanella amazonensis SB2B 13482.93295 4933.30155 10944.25635 4955.67775 36959091 tftH Organic Remediation Aromatics Chlorinated aromatics Rhizobium sp. NGR234 9377.91586667 31919.35976667 28854.7913 31180.66086667 8095.22203333 16279.02915 17039.26056667 91223445 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio alginolyticus 12G01 3220.08953333 5085.0517 29608991 ZntA Metal Resistance Zinc Streptomyces avermitilis MA-4680 6452.24993333 9447.021375 6182.5074 119377453 sox Sulphur Sulphur oxidation Paracoccus denitrificans PD1222 8143.1123 5674.52225 8353.7523 4633574 nosZ Nitrogen Denitrification uncultured bacterium 696AB 22024.94595 146404455 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 3003.46325 3400.3041 87299421 gyrB other category Phylogenetic marker Enterococcus faecium 29686.6771 13906.10215 48158.12755 16178.20415 3821901 isopullulanase Carbon cycling Carbon degradataion Starch Penicillium 4956.18905 6600.99173333 34640.8458 123228556 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 7532.1664 6411.4537 114320425 sox Sulphur Sulphur oxidation Alkalilimnicola ehrlichei MLHE-1 8552.9641 14670.887 25895.1839 5702381 TerC Metal Resistance Tellurium Proteus mirabilis 4066.22835 112462023 nirK Nitrogen Denitrification uncultured bacterium 4540.01055 8756.3638 12806.5638 21107.51333333 5667.2748 74316965 atzA Organic Remediation Herbicides related compound Thiobacillus denitrificans ATCC 25259 3155.49755 10930.5374 57126.2255 39631.96113333 84713196 Catechol Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 2738.7208 19753.49015 74056460 trzN Organic Remediation Herbicides related compound Thiobacillus denitrificans ATCC 25259 3913.1107 8342.2265 3728.80375 27315038 czcD Metal Resistance Cadmium,Cobalt,Zinc Staphylococcus epidermidis ATCC 12228 21148.73086667 10814.05596667 10768.302 26547.7401 13504.35996667 13563.95366667 28975409 lip Carbon cycling Carbon degradataion Lignin Ceriporiopsis subvermispora 4767.77913333 7509.32625 13542.6504 15077.8067 87134244 cbdA Organic Remediation Aromatics Chlorinated aromatics Novosphingobium aromaticivorans DSM 12444 4504.45925 23722.1483 12972.13423333 14819.10565 16671.594 28206.12103333 15128.76715 31027.65833333 83017123 dxnA Organic Remediation Aromatics Heterocyclic aromatics Paenibacillus sp. YK5 6525.3346 6904.91276667 9835.00415 14000.46823333 12499.83193333 150008552 ara Carbon cycling Carbon degradataion Hemicellulose Parabacteroides distasonis ATCC 8503 3901.38855 6485.2751 30584.1764 19212.32665 3591.8412 17431447 narG Nitrogen Denitrification Ralstonia solanacearum 3087.31 90820249 nplT Carbon cycling Carbon degradataion Starch Lactobacillus salivarius subsp. salivarius UCC118 4187.49105 86750308 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris HaA2 5961.03963333 10584.57346667 30160.39105 24657.613 9072.8574 6238.3245 13249533 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 2473.32455 3503.43455 10529.51015 16126094 pimF Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 7031.49206667 6418.61245 119434074 tftH Organic Remediation Aromatics Chlorinated aromatics Arthrobacter sp. JS443 4115.50746667 8346.79775 119955806 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 3974.0602 11680.07435 157405405 CopA Metal Resistance Copper Methylobacterium populi BJ001 4208.1129 8130.431 88178809 endoglucanase Carbon cycling Carbon degradataion Cellulose Chaetomium globosum CBS 148.51 9437.42075 20767.0931 37753.1704 7147.4799 19604.3157 6272.96203333 12218.56065 49529954 trzN Organic Remediation Herbicides related compound Acinetobacter sp. ADP1 4488.15215 11539.0446 25445.6362 17329.52826667 13452.4886 111224243 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 4826.00195 6951.4533 10654.17406667 10764.25795 32895196 nirS Nitrogen Denitrification uncultured bacterium 5042.37485 5530.5236 23032.32945 12258.29825 13435.86076667 146406878 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. BTAi1 3558.1345 119957507 CadA Metal Resistance Cadmium Mycobacterium vanbaalenii PYR-1 3473.90106667 34249.434 129623.7104 120071.3456 41709.66656667 23423.04696667 63227.91623333 53739.985 114738227 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 7528.8207 7081.78675 57493.14816667 7963.8208 7620.9861 20510.3031 148499659 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 3374.6791 62461700 gyrB other category Phylogenetic marker Vibrio campbellii 4035.01 8100.20685 17636.4231 30639.62486667 84665810 pcc Carbon cycling Carbon fixation Rhodobacterales bacterium HTCC2654 4459.53915 75182.25155 24289.6931 62412.7208 11646.359 68056074 pulA Carbon cycling Carbon degradataion Starch Exiguobacterium sibiricum 255-15 3244.1176 4482.89995 4736.67725 154162742 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 4693.79745 6119.09555 154154413 gyrB other category Phylogenetic marker Parvibaculum lavamentivorans DS-1 13026.7408 5838.58645 1899048 endochitinase Carbon cycling Carbon degradataion Chitin Serratia plymuthica 5404.02716667 8683.05383333 15922.20023333 35148.3529 25754.4115 9002.61123333 5224.7138 76577502 nirK Nitrogen Denitrification uncultured bacterium 7822.28766667 18952.99846667 20271.45875 65353.07405 52207.4865 17017.64413333 16045.32755 95109363 CMCI Organic Remediation Aromatics Other aromatics Pseudomonas 4930.47065 11579.79426667 16480.70215 12041.6315 6659.8452 5408.025 5254.07405 126035125 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 33496.64396667 149375925 trzN Organic Remediation Herbicides related compound Marinobacter algicola DG893 5973.75383333 6848.68396667 39648334 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 4355.63205 6954.74116667 10817.82 3744.8152 6300.12355 89202820 gyrB other category Phylogenetic marker Bacillus cereus subsp. cytotoxis NVH 391-98 3113.9818 32109.48626667 44509.9347 6899.24055 4099111 gyrB other category Phylogenetic marker Mycoplasma arthritidis 8013.4929 8817.80553333 7396.1679 7045.8295 90422543 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB18 5470.8926 18247.12855 15126.93185 8274.1531 9455.57435 51242697 phenol_oxidase Carbon cycling Carbon degradataion Lignin Lentinula edodes 4797.42606667 13712.3575 13121.335 8882.7867 11620.67505 68467625 nmoA Organic Remediation Aromatics Nitoaromatics Candida albicans SC5314 6616.5366 7387.54645 8617.19843333 15108.49485 85713827 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrobacter sp. Nb-311A 6286.57636667 10714.19493333 10544.09746667 5199.17933333 22778290 ChrA Metal Resistance Chromium Oceanobacillus iheyensis HTE831 2254.5344 13182.23395 14852.70126667 45272475 nifH Nitrogen Nitrogen fixation uncultured bacterium 3816.40043333 61224796 phenol_oxidase Carbon cycling Carbon degradataion Lignin Pleurotus pulmonarius 7307.97816667 12600.98513333 18268.543 14391.60335 31471.63003333 20901.8777 18469.23406667 6624271 xylG Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni 7141.2925 19377.58766667 7637.99125 14811.5332 10182.3804 8613.96706667 77959567 pulA Carbon cycling Carbon degradataion Starch Yersinia bercovieri ATCC 43970 3639.39205 17794.27365 16711.27665 126035103 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 3009.80825 9488.47785 32308019 narG Nitrogen Denitrification uncultured bacterium 8279.5795 94471251 narG Nitrogen Denitrification uncultured bacterium 8308.10933333 10017.51655 10880.47075 46240688 pcaG Organic Remediation Aromatics Other aromatics bacterium SB2 3290.28305 6474.864 9529.9594 151583234 ChrA Metal Resistance Chromium Opitutaceae bacterium TAV2 23920.8283 5777.93625 52846.70353333 43002.1098 38925.01343333 16148.71365 58616380 TerZ Metal Resistance Tellurium Azoarcus sp. EbN1 2863.3544 145242124 vdh Carbon cycling Carbon degradataion Others Aspergillus niger 3840.1199 4750.88825 73763082 nirK Nitrogen Denitrification uncultured bacterium 3012.01333333 46520031 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5341.59723333 24133.9087 29127.98573333 22938.41863333 8480.28255 113526716 benD Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 4320.6245 7420.69175 33987.09665 9666.35395 17070.70486667 9950.30325 49532328 czcA Metal Resistance Cadmium,Cobalt,Zinc Acinetobacter sp. ADP1 4291.7648 3600.58745 6883.99535 7447.4133 148499903 CopA Metal Resistance Copper Sphingomonas wittichii RW1 3365.26166667 4532.1905 111017380 oxdB Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 3213.39355 13166.00305 18222.9776 94470925 nifH Nitrogen Nitrogen fixation uncultured bacterium 7290.8662 43592.80543333 7385.31305 30869.13213333 34871.73523333 77974412 ArsC Metal Resistance Arsenic Yersinia frederiksenii ATCC 33641 7879.78296667 27011.91663333 18099.7599 28141.0453 15645.7657 17223.96815 118690099 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 15786.29133333 20497.2262 31308.7778 16488.1393 20396.60876667 67616.63013333 118133810 CopA Metal Resistance Copper Clostridium novyi NT 13544.19195 29251.46356667 23499.46715 32679.26215 84711534 nifH Nitrogen Nitrogen fixation Polaromonas naphthalenivorans CJ2 8222.4885 11879.40616667 18036.18193333 15408.9878 4226.9668 61398346 mcrA Carbon cycling Methane Methane production uncultured archaeon 8680.6621 5090.3055 12965.4364 47571436 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Rubrivivax gelatinosus PM1 3451.93745 6122.47196667 7550.112 11191.17635 126710975 pulA Carbon cycling Carbon degradataion Starch Sagittula stellata E-37 5320.54436667 5942.96825 6379.87193333 69155069 ChrA Metal Resistance Chromium Paracoccus denitrificans PD1222 2612.53975 10423.7223 146404457 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 3823.29915 5705.63935 156708224 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 3383.70785 8457.95416667 14025078 gyrB other category Phylogenetic marker Mesorhizobium loti MAFF303099 2773.81485 120435048 ara Carbon cycling Carbon degradataion Hemicellulose Gramella forsetii KT0803 5016.19076667 91790351 mdlD Organic Remediation Aromatics Other aromatics Polaromonas sp. JS666 2883.9254 5775.60933333 5135.4485 156529061 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio harveyi ATCC BAA-1116 8885.1889 8954.75355 10834.2101 152981402 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille 4007.24833333 8726.16005 33387.97493333 10110.76936667 5183.7223 111147609 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia alni ACN14a 6696.2481 9917.08275 68135527 nifH Nitrogen Nitrogen fixation uncultured bacterium 4841.0845 31673.2049 8004.26295 88791809 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrococcus mobilis Nb-231 13403.24136667 29497.58953333 25104.8729 32171.4899 11507.85933333 12436.57585 15220.0804 14776.50456667 3261674 ppk Phosphorus Phosphorus utilization Mycobacterium tuberculosis H37Rv 3383.11273333 7745.76053333 47321.95015 13799.866 11907.3693 16381.31645 73763022 nirK Nitrogen Denitrification uncultured bacterium 5506.8812 13517007 gyrB other category Phylogenetic marker marine CFB-group bacterium MBIC04446 2671.59095 3805.9588 18100.27853333 39796.22136667 119537807 CopA Metal Resistance Copper Nocardioides sp. JS614 4216.9822 148838276 phn Organic Remediation Herbicides related compound Vibrio shilonii AK1 3367.4438 116061968 dsrA Sulphur sulfite reductase Desulfotomaculum sp. Srb55 14901.1545 11388.18533333 33920.49753333 34978.7851 34188.71545 11400.72263333 14258.49043333 45047929 atzA Organic Remediation Herbicides related compound Methanococcus maripaludis S2 3324.19215 4136.02905 55377009 cytochrome Energy process Energy process Haloarcula marismortui ATCC 43049 8275.185 11338.3946 7734.31255 15368.18513333 12394.74213333 22449985 nifH Nitrogen Nitrogen fixation uncultured bacterium 8313.36126667 40858.73396667 12293.60155 18613.38906667 28843.3448 8525.89515 119951195 pheA Organic Remediation Aromatics Other aromatics Arthrobacter aurescens TC1 6273.542 9447.0049 145235563 pcpE Organic Remediation Herbicides related compound Aspergillus niger 4347.6759 4849.60595 41406443 linB Organic Remediation Pesticides related compound Mycobacterium avium subsp. paratuberculosis K-10 3312.38355 11324.23683333 21809.3522 19440.95133333 11719.10876667 10255.3132 13394.6822 91202858 CopA Metal Resistance Copper Candidatus Kuenenia stuttgartiensis 7367.1443 15806334 pcc Carbon cycling Carbon fixation Deinococcus radiodurans R1 4088.6421 8640.21623333 90331497 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 2960.46875 10931.92875 21538.8832 33798.66235 8958.33746667 41395795 TehB Metal Resistance Tellurium Mycobacterium avium subsp. paratuberculosis K-10 4573.0735 4535.3346 19931.6309 9515.4004 10374.99216667 74276793 czcD Metal Resistance Cadmium,Cobalt,Zinc Actinobacillus succinogenes 130Z 3948.19565 8473.3103 10697.93815 5119.61586667 82703094 Arylest Organic Remediation Aromatics Other aromatics Nitrosospira multiformis ATCC 25196 2212.56525 5288.8905 23382.9755 10498.0628 12512.6568 119962058 ureC Nitrogen Ammonification Arthrobacter aurescens TC1 2890.41875 3686.47925 17933466 nifH Nitrogen Nitrogen fixation enrichment culture bacterium 01 4844.28923333 156523557 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 5934.9443 6910.87855 17477.38575 17306.95403333 5448.1024 86169577 gyrB other category Phylogenetic marker Weissella confusa 10491.02896667 16199.83765 16398.73693333 11562.6862 13811.81416667 3864.405 6528.00665 6910981 mnp Carbon cycling Carbon degradataion Lignin Dichomitus squalens 4174.49366667 5876.81085 21570.065375 9709.30985 12931.1411 121605013 cbdA Organic Remediation Aromatics Chlorinated aromatics Polaromonas naphthalenivorans CJ2 4632.4002 23243.4828 10312.35095 5300.45065 23128027 ppx Phosphorus Phosphorus utilization Nostoc punctiforme PCC 73102 5719.6293 23249.82645 89092374 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanospirillum sp. MED92 7854.3027 8162.3701 11838.36755 90821912 BADH Organic Remediation Aromatics Other aromatics Lactobacillus salivarius subsp. salivarius UCC118 6565.96395 14251.6689 11446.39775 11893.7406 25682.9248 116064701 ppx Phosphorus Phosphorus utilization Synechococcus sp. BL107 3347.26715 86357847 pcc Carbon cycling Carbon fixation Rhizobium etli CFN 42 3370.4528 4936.68656667 4381.5996 114767551 ChrA Metal Resistance Chromium Roseovarius sp. HTCC2601 2840.51475 111026491 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 5397.01753333 8860.63583333 39593.9174 22281.6195 15120.3666 29605797 pulA Carbon cycling Carbon degradataion Starch Streptomyces avermitilis MA-4680 3232.9131 4704.76215 19568104 exoglucanase Carbon cycling Carbon degradataion Cellulose Talaromyces emersonii 3648.0734 16251.73765 4967.55575 110822609 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 9288.49006667 17171.19573333 13264.5202 18977.86666667 77961236 dmsA Organic Remediation Others Yersinia mollaretii ATCC 43969 2727.59336667 5001.373 33447.96565 17886.59926667 51246484 linB Organic Remediation Pesticides related compound Desulfotalea psychrophila LSv54 4241.9601 8759.44605 36410.53133333 21138.95296667 10990.3816 7996.08473333 68198408 pulA Carbon cycling Carbon degradataion Starch Frankia sp. EAN1pec 5709.84365 5367.4473 10028.02435 83853070 tfdA Organic Remediation Aromatics Chlorinated aromatics Oceanicaulis alexandrii HTCC2633 3434.70125 4935.3898 20704.15693333 9742.3439 152989365 cytochrome Energy process Energy process Pseudomonas aeruginosa PA7 4432.7067 19622.2666 68234365 pulA Carbon cycling Carbon degradataion Starch Frankia sp. EAN1pec 3555.15845 8674.9126 25268.1873 6416.28415 60476255 dsrB Sulphur sulfite reductase uncultured bacterium 25988.20066667 12696.2564 26521.1354 26930.5645 11521.95113333 111019986 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. RHA1 9155.86386667 10347.15856667 19891.2542 7533.59785 47155274 gyrB other category Phylogenetic marker Shewanella piezotolerans WP3 7391.55735 29824659 nirS Nitrogen Denitrification uncultured bacterium 6295.92545 4633563 nosZ Nitrogen Denitrification uncultured bacterium 696F 7738.8443 10536.22246667 20471.503 32476.89265 32950.9686 6973.69586667 8155.91405 106886878 pulA Carbon cycling Carbon degradataion Starch Clostridium phytofermentans ISDg 3704.2297 7739.4679 153793979 endochitinase Carbon cycling Carbon degradataion Chitin Ruminococcus gnavus ATCC 29149 4580.7017 139003375 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5769.28605 10018.34993333 14132.29913333 19926.39726667 48663.1601 11926.97883333 11317.5707 90437642 gyrB other category Phylogenetic marker Vibrio angustum S14 10155.01133333 12589.3789 18518.0786 16139.06315 60380.94055 13280.01945 11164.98 23069.214 89895487 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 7681.49376667 4975.5592 34355.71946667 9372.7534 25286.61513333 12496.7436 20288.01486667 114778865 ArsC Metal Resistance Arsenic Mariprofundus ferrooxydans PV-1 2733.63355 12688.40373333 12739.71193333 145299612 linB Organic Remediation Pesticides related compound Aeromonas salmonicida subsp. salmonicida A449 6630.98356667 18259.9311 39576.6618 17107.11753333 17715.7366 121530811 czcD Metal Resistance Cadmium,Cobalt,Zinc Ralstonia pickettii 12J 4772.6654 12587.48605 22154.01865 18002.22435 14470.9749 112774552 akbF Organic Remediation Aromatics BTEX and related aromatics Delftia sp. AN3 5285.03113333 7263.35115 29012.70526667 5888.5128 7146.65965 91977420 ppx Phosphorus Phosphorus utilization Rhodopseudomonas palustris BisB5 5878.57885 7365.8682 77978516 CadA Metal Resistance Cadmium Yersinia intermedia ATCC 29909 3148.38145 11556.90215 8618.21803333 12659194 nifH Nitrogen Nitrogen fixation Treponema sp. ZAS-2 3813.86365 46307965 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 13454.98126667 10379.9886 32364170 gyrB other category Phylogenetic marker Pasteurella canis 6170.87476667 27021.2119 12642.3659 12215.24595 8564.42395 148556312 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 14873.7155 3292.46725 5919.0719 114552723 ZntA Metal Resistance Zinc Mariprofundus ferrooxydans PV-1 4743.66395 6257.0466 29402.5107 30674.64286667 10517.3214 15472.80213333 17220.49736667 73697456 amoA Nitrogen Nitrification uncultured crenarchaeote 4023.5929 10263.35666667 22045.5638 13399.33336667 11139.5188 7160891 nirS Nitrogen Denitrification uncultured bacterium wC1 5885.42403333 9105.54373333 12934.40666667 6638.5096 11548.47786667 144166 xylanase Carbon cycling Carbon degradataion Hemicellulose 4961.81325 7539.1969 28965.5756 7993.06743333 85106211 czcD Metal Resistance Cadmium,Cobalt,Zinc Neurospora crassa OR74A 6968.99303333 4385.8956 109627034 atzA Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 45622.58993333 41947.02743333 35007.98403333 21159.1677 8447.00776667 3410.42825 8684.539 7365.1974 125713254 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Clostridium thermocellum ATCC 27405 2717.6249 158141583 nrfA Nitrogen Dissimilatory N reduction Alkaliphilus oremlandii OhILAs 6729.34156667 10339.4275 26086.38715 37702651 phenol_oxidase Carbon cycling Carbon degradataion Lignin Trametes sp. C30 14936.4784 77458548 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 7334.4414 16320.43915 29312.75356667 71735171 TerZ Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A 2634.6498 55230011 nosZ Nitrogen Denitrification Haloarcula marismortui ATCC 43049 3603.65675 3991.87633333 15100.95245 14520.40195 16647.095 4165.05195 6023.64665 18034317 dsrB Sulphur sulfite reductase Syntrophobacter wolinii 10015.7706 5182.55703333 6813.84045 15471.0559 75704121 glucoamylase Carbon cycling Carbon degradataion Starch Anabaena variabilis ATCC 29413 3098.40395 77978679 pulA Carbon cycling Carbon degradataion Starch Yersinia intermedia ATCC 29909 13640.54006667 148847730 silP Metal Resistance Silver Planctomyces maris DSM 8797 3921.70226667 7256.2493 6974.62573333 89360567 bphC Organic Remediation Aromatics Polycyclic aromatics Xanthobacter autotrophicus Py2 3652.37566667 5656.83443333 6442.10945 154273985 glx Carbon cycling Carbon degradataion Lignin Ajellomyces capsulatus NAm1 5779.318 9535.4514 18725.0145 20200.73826667 34594.56925 116688011 mcrA Carbon cycling Methane Methane production Methanosarcinaceae archaeon ZC-1 7405.3792 8586.72726667 38894.7888 10569.66473333 27743.92866667 8072.667 118571429 bphD Organic Remediation Aromatics Polycyclic aromatics Mycobacterium ulcerans Agy99 4988.41825 9403.634 22672.5989 9603.8685 11292.23863333 42713.14853333 7571.6655 146399545 czcD Metal Resistance Cadmium,Cobalt,Zinc Geobacter uraniumreducens Rf4 2691.62993333 4146.60265 7721.52105 12407.95633333 120437263 CopA Metal Resistance Copper Gramella forsetii KT0803 4860.87106667 6790.27305 13497.10525 7310.0805 116804544 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 6002.3331 14439.95106667 13727.3839 18719.5556 8635.4242 7550.25743333 9293.40536667 85667045 pulA Carbon cycling Carbon degradataion Starch Bifidobacterium adolescentis 9183.02045 7027.39195 43033.7674 28713.95253333 46742.99866667 6805.44795 8268.41585 119412007 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 3678.2906 7804.9865 7230.8248 7295.6833 8672.77313333 148265519 silC Metal Resistance Silver Geobacter uraniumreducens Rf4 12601.854 3873.66515 14169.35795 13671.63065 20655.98395 24375534 cytochrome Energy process Energy process Shewanella oneidensis MR-1 3997.54373333 33906.10105 22628.49193333 118577255 czcA Metal Resistance Cadmium,Cobalt,Zinc Pelobacter propionicus DSM 2379 4137.04835 4061.60723333 48446.74866667 11060.7964 18911.00695 22143.9074 25453.76716667 13625838 gdh Nitrogen Ammonification Peptoniphilus asaccharolyticus 19332.37846667 15007.4355 17295.41885 111612839 CopA Metal Resistance Copper Verminephrobacter eiseniae EF01-2 2655.3822 5878.2943 8260.45286667 77698209 sox Sulphur Sulphur oxidation Rhodopseudomonas palustris BisA53 3565.6197 13327.2666 26289.95473333 31173.2387 21951.74786667 4024.74905 89094978 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanospirillum sp. MED92 4358.2431 9706.7245 6939879 gyrB other category Phylogenetic marker Weeksella virosa 9397.38235 39385.77353333 7000.1144 26654.8404 31802.97693333 121530929 Catechol Organic Remediation Aromatics Other aromatics Ralstonia pickettii 12J 2129.96 88795283 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' 2895.927 4695.86055 3684.7329 46913619 TerC Metal Resistance Tellurium Photobacterium profundum SS9 3291.70535 71839530 czcA Metal Resistance Cadmium,Cobalt,Zinc Pelobacter propionicus DSM 2379 4566.03735 3097.33935 15455.52455 17083.55313333 13881.94543333 9985.72995 17070.3695 110817071 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 4527.9578 18270.8655 91354.8152 36947.7803 10616.305 39933735 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 3084.852 118666721 proO Organic Remediation Aromatics Other aromatics Delftia acidovorans SPH-1 4287.1623 19766.648475 7578.022625 6007.10355 74053796 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 5120.49405 87281243 nirS Nitrogen Denitrification uncultured bacterium 6140.22376667 15843.24866667 25915.73606667 17649.64273333 41979.11883333 25536.0939 9824.20913333 11151.25956667 82568135 gyrB other category Phylogenetic marker Seinonella peptonophila 8327.22976667 17526.94996667 18460.47535 10720.41545 12284.1106 8372.99343333 126734307 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. CCS2 2908.89803333 2893.3771 118594216 gyrB other category Phylogenetic marker Methylophilales bacterium HTCC2181 8595.1247 22009.9269 20026.43866667 34053.1527 11164.0194 11369.37166667 78367707 CopA Metal Resistance Copper Shewanella sp. PV-4 4045.73436667 6015.37455 91793202 CopA Metal Resistance Copper Shewanella denitrificans OS217 3938.91935 53756627 gyrB other category Phylogenetic marker Methylococcus capsulatus str. Bath 2161.5435 119774581 cytochrome Energy process Energy process Shewanella amazonensis SB2B 3415.1398 91798211 CopA Metal Resistance Copper Chromohalobacter salexigens DSM 3043 3579.43085 38371.5006 32471.46776667 89899109 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens T118 7098.3531 25365.3176 12745.7188 13556.89853333 39318.6454 25266.6807 22187.36266667 91690443 cbdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 2841.9296 118686284 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MWYL1 2124.0714 77965526 CopA Metal Resistance Copper Burkholderia sp. 383 3068.67575 5583.17656667 8956.7125 12621.3671 148550668 limEH Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 9776.78843333 5533.9044 16880.24485 134268331 catB Organic Remediation Aromatics BTEX and related aromatics Geobacillus thermodenitrificans NG80-2 6924.41145 5976.07215 31395.2239 72619.73745 55358.04615 2660542 CopA Metal Resistance Copper Helicobacter felis 11551.83185 8441.45283333 45305.63996667 31204.98203333 13290.80796667 9816.36035 6782.42036667 63029784 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5919.89125 126727626 pcaG Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2150 5717.52583333 4508.08065 685212 glucoamylase Carbon cycling Carbon degradataion Starch Athelia rolfsii 3254.22046667 7982.5907 22440.17373333 19714.54845 16372.39886667 6961.33955 5712.7678 83577481 silC Metal Resistance Silver Rhodospirillum rubrum ATCC 11170 3071.89055 4387.6025 16052.9018 8896.8336 18433.5218 83954954 nhh Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. NAS-14.1 4446.32465 115511400 Xamo Organic Remediation Other Hydrocarbons Pseudonocardia sp. TY-7 3688.71885 10579.0212 119398924 amyA Carbon cycling Carbon degradataion Starch Aspergillus clavatus NRRL 1 10225.1019 27182.89416667 7907.55455 7721.3965 14287.43513333 13679.48225 91186958 pcc Carbon cycling Carbon fixation Psychroflexus torquis ATCC 700755 3883.07546667 11450.1357 27933.2219 14274.97786667 110819316 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 3100.25065 6412.10015 9371.06113333 145229913 xylG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 12925.0884 158319749 TerZ Metal Resistance Tellurium Alkaliphilus oremlandii OhILAs 8911.93573333 26156.88583333 29616.25443333 20108.71513333 17728.68093333 14569.62833333 31159.86276667 58001438 SilA Metal Resistance Silver Gluconobacter oxydans 621H 4280.89663333 4024.31695 43733.90235 26890.0221 60648.4464 12145.2342 13900.44745 81251090 gyrB other category Phylogenetic marker Nitrosovibrio sp. FJI82 2403.51745 35060.65133333 6756.0442 124110761 bphA Organic Remediation Aromatics Polycyclic aromatics Sphingobium yanoikuyae 7936.31405 16888.2868 21738.39295 46416.6376 10419.04276667 6247.3344 156110640 gyrB other category Phylogenetic marker Bacteroides ovatus ATCC 8483 5126.1206 4664.3723 127513453 cytochrome Energy process Energy process Shewanella loihica PV-4 14831.51906667 9122.9149 32708.41136667 27192.93013333 110819169 BADH Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 8190.63713333 126105507 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 6729.66663333 15132.1747 148242001 endochitinase Carbon cycling Carbon degradataion Chitin Synechococcus sp. RCC307 4156.67555 10625.26683333 18527.341 110827186 vanA Carbon cycling Carbon degradataion Others Verminephrobacter eiseniae EF01-2 3416.0108 8320.4839 6023.78595 29833824 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 3221.6725 26966.3042 10185.7324 18243.6294 3757.60305 10964.22466667 156864227 ChrA Metal Resistance Chromium Clostridium sp. L2-50 3212.25945 78172074 sox Sulphur Sulphur oxidation Chlorobium chlorochromatii CaD3 3033.6878 77964467 alkK Organic Remediation Others Burkholderia sp. 383 3324.48235 19585.79226667 12176.8023 13421273 gyrB other category Phylogenetic marker Caulobacter crescentus CB15 2814.05075 6129.9477 46133885 amyA Carbon cycling Carbon degradataion Starch Gibberella zeae PH-1 8431.80363333 8596.3477 9727.24986667 17942.20825 9308.25406667 4974.72556667 12638.87073333 7279.26503333 126641532 nmoA Organic Remediation Aromatics Nitoaromatics Acinetobacter baumannii ATCC 17978 4050.3629 150013434 CopA Metal Resistance Copper Methanococcus aeolicus Nankai-3 4152.59826667 11229.56425 126660002 xylF Organic Remediation Aromatics BTEX and related aromatics Cyanothece sp. CCY0110 20152.14745 6602.92785 145225970 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK 8933.395 13820.5574 148499658 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 12002.431 19337.11016667 7766.504 7912.8811 17863089 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio sp. 5SM-1 9748.13006667 8123.81426667 16261.4337 4772.52815 5667.7663 56799073 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 17007.4011 32616.3997 13231.36045 29582.8872 91223183 tutFDG Organic Remediation Aromatics BTEX and related aromatics Vibrio alginolyticus 12G01 7266.85383333 15226.40835 32576.79813333 16795.1965 27589.6859 5391.8232 6493.3177 150864666 tfdA Organic Remediation Aromatics Chlorinated aromatics Pichia stipitis CBS 6054 17656.98393333 46639.5156 157285734 napA Nitrogen Dissimilatory N reduction uncultured bacterium 6685.4398 23441.7555 13808.21575 22325.75285 108764683 czcD Metal Resistance Cadmium,Cobalt,Zinc Rubrobacter xylanophilus DSM 9941 3807.6851 56566210 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5404.98583333 14389215 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3214.7187 2072732 carA Organic Remediation Aromatics Heterocyclic aromatics Pseudomonas putida 3163.5026 22159.584 44524.5544 4972285 endochitinase Carbon cycling Carbon degradataion Chitin Listonella anguillarum 7053.04215 152974231 CadA Metal Resistance Cadmium Bacillus cereus subsp. cytotoxis NVH 391-98 3549.1173 7268.60455 6546.64205 34017186 dsrB Sulphur sulfite reductase uncultured bacterium 3768.16355 146192287 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. ORS278 3876.01345 86573237 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 4148.49455 11138.07395 8966.2311 84501255 gyrB other category Phylogenetic marker Oceanicola batsensis HTCC2597 5710.3385 9531.16415 16220.0733 45882.41943333 124496330 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Bacillus coagulans 36D1 4034.60815 77959611 xylA Carbon cycling Carbon degradataion Hemicellulose Yersinia bercovieri ATCC 43970 5695.8002 134099082 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 5534.6955 8241.53383333 62425089 ppx Phosphorus Phosphorus utilization Brevibacterium linens BL2 3733.3214 121713452 pectinase Carbon cycling Carbon degradataion Pectin Aspergillus clavatus NRRL 1 4636.13985 6959.50695 50409334 glucoamylase Carbon cycling Carbon degradataion Starch Debaryomyces hansenii CBS767 5798.4737 12600.58263333 126347932 nmoA Organic Remediation Aromatics Nitoaromatics Streptomyces ambofaciens ATCC 23877 4953.65465 9971353 gyrB other category Phylogenetic marker Flavobacterium aquatile 5743.0842 120405368 bphA Organic Remediation Aromatics Polycyclic aromatics Mycobacterium vanbaalenii PYR-1 4483.46765 17131.783 8935.91605 29605348 pcaG Organic Remediation Aromatics Other aromatics Streptomyces avermitilis MA-4680 4400.05665 10001.4216 7322.714 8165.5457 113927051 aclB Carbon cycling Carbon fixation Sulfurihydrogenibium sp. GV2-1C1 7948.1223 16337.7316 10443292 thmAB Organic Remediation Others Pseudonocardia sp. K1 4793.00095 119767916 nifH Nitrogen Nitrogen fixation Shewanella amazonensis SB2B 3393.48775 115254776 ChnA Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 2734.1664 53721878 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia pseudomallei K96243 6612.8752 149375484 benAB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter algicola DG893 3648.4629 66840897 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 9059.64355 10110.16475 41326580 pcaG Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 6127.46426667 34100.54086667 21958.57585 19996.1879 8035.3649 8464.62585 117996767 phn Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 4141.4568 52785856 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis ATCC 14580 6632.764 7766.7669 8477.98585 6838.55486667 927653 endochitinase Carbon cycling Carbon degradataion Chitin Kurthia zopfii 4552.96925 8405.06295 9406.6251 113874470 catB Organic Remediation Aromatics BTEX and related aromatics Sinorhizobium medicae WSM419 28509.8148 23529.45505 148557154 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 3540.46495 30766.3067 17734.6471 41026.30805 56696937 bclA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 4181.4341 114197034 nbaC Organic Remediation Aromatics Nitoaromatics Aspergillus terreus NIH2624 26492.9227 4881.30755 59801112 ZntA Metal Resistance Zinc Neisseria gonorrhoeae FA 1090 4255.66595 10611.75515 10105.9531 49329242 ChrA Metal Resistance Chromium Bacillus thuringiensis serovar konkukian str. 97-27 7085.02665 119456450 mer Metal Resistance Mercury Lyngbya sp. PCC 8106 4034.2923 70989217 amyA Carbon cycling Carbon degradataion Starch Aspergillus fumigatus Af293 4503.69295 146340090 trzN Organic Remediation Herbicides related compound Bradyrhizobium sp. ORS278 5873.89775 54013939 akbF Organic Remediation Aromatics BTEX and related aromatics Nocardia farcinica IFM 10152 4502.8235 9990.548 6953.3997 15077477 dsrA Sulphur sulfite reductase Desulfofaba gelida 6689.17676667 84665175 CopA Metal Resistance Copper Rhodobacterales bacterium HTCC2654 9958.99565 77461887 ZntA Metal Resistance Zinc Pseudomonas fluorescens PfO-1 6863.33635 16139.2647 119489974 nmoA Organic Remediation Aromatics Nitoaromatics Neosartorya fischeri NRRL 181 6061.47635 14200.3572 17501.2578 84499972 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 5703.43405 18753.0937 9723.62573333 90413891 nitA Organic Remediation Aromatics Other aromatics Photobacterium profundum 3TCK 8512.616 16029.87855 31476.13973333 31206.1662 6924.80025 148503402 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 3267.95795 21666.20805 16285.84196667 83943414 nreB Metal Resistance Nickel Sulfitobacter sp. EE-36 3347.6106 124488109 napA Nitrogen Dissimilatory N reduction uncultured bacterium 12434.74663333 8955.88105 8376.4403 50839105 gyrB other category Phylogenetic marker Propionibacterium acnes KPA171202 4938.818 16955.41746667 88797057 pulA Carbon cycling Carbon degradataion Starch Reinekea sp. MED297 3308.51565 50982474 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 3932.9013 20270772 phenol_oxidase Carbon cycling Carbon degradataion Lignin Trametes pubescens 6222.57025 17431367 akbF Organic Remediation Aromatics BTEX and related aromatics Ralstonia solanacearum 4222.3539 121304061 ChrA Metal Resistance Chromium Ralstonia pickettii 12J 3100.74565 5327.3429 118058649 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas mendocina ymp 9695.49575 11692.70296667 11312.54016667 116269653 Arylest Organic Remediation Aromatics Other aromatics Polynucleobacter sp. QLW-P1DMWA-1 2788.29795 149203252 CopA Metal Resistance Copper Roseovarius sp. TM1035 4149.2807 113529109 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 8723.9536 5486.75875 6432.4932 24987055 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas putida KT2440 4519.1327 5361.02083333 66844610 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus fumigatus Af293 5300.2996 8655.25495 156053894 ureC Nitrogen Ammonification Sclerotinia sclerotiorum 1980 3758.98945 14761.11315 15466.892 37548680 nifH Nitrogen Nitrogen fixation uncultured bacterium 4641.9734 12503.0652 29160351 exoglucanase Carbon cycling Carbon degradataion Cellulose Poitrasia circinans 7088.9476 13746.61925 24986362 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida KT2440 5982.75445 11681.29 8748.93345 9194.8295 82741452 FTHFS Carbon cycling Acetogenesis Shewanella sp. W3-18-1 3407.77233333 14543.08555 27705.13025 6113.6197 154153211 cda Carbon cycling Carbon degradataion Starch Fervidobacterium nodosum Rt17-B1 7588.4697 7032.0035 6021.86225 86162869 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinomonas sp. MED121 10417.20805 5507.56835 11062.7483 29160347 exoglucanase Carbon cycling Carbon degradataion Cellulose Exidia glandulosa 4968.8769 4715.498 73762778 nirK Nitrogen Denitrification uncultured bacterium 3864.13235 30688.6667 117985797 pnbA Organic Remediation Aromatics Nitoaromatics Burkholderia phymatum STM815 4888.701 8973.95275 156631623 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 3235.96495 151562278 rubisco Carbon cycling Carbon fixation Ochrobactrum anthropi ATCC 49188 3768.8971 13935.4781 13403.892 4409.45645 5044.6702 76058170 nosZ Nitrogen Denitrification uncultured bacterium 13929.04206667 23953.42693333 45368.3308 4476.3932 13332.93126667 25949.31396667 12498.82026667 115607477 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 3224.84565 39934688 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 4468.09435 12864.5391 29604989 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 3452.1735 121605017 Catechol Organic Remediation Aromatics Other aromatics Polaromonas naphthalenivorans CJ2 7673.85915 18081.74615 145257313 cellobiase Carbon cycling Carbon degradataion Cellulose Aspergillus niger 5018.9042 88181244 pheA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 10302.9891 13317.51943333 12365.41925 2588997 exaA Organic Remediation Chlorinated solvents Hyphomicrobium methylovorum 3672.8589 27948579 phenol_oxidase Carbon cycling Carbon degradataion Lignin Ceriporiopsis subvermispora 4994.31635 29430.9067 113529921 nmoA Organic Remediation Aromatics Nitoaromatics Ralstonia eutropha H16 3879.52015 143753 CadA Metal Resistance Cadmium 5035.2874 8703.5881 109699808 pchCF Organic Remediation Aromatics BTEX and related aromatics Pseudoalteromonas atlantica T6c 28038.20193333 33063.66946667 63121.6816 6450.83675 23137.3953 33798.88913333 22279.04613333 51587623 gyrB other category Phylogenetic marker Corallococcus coralloides 18182.2383 13080.40505 29204.90796667 146291729 cytochrome Energy process Energy process Shewanella putrefaciens CN-32 6641.98995 45616.62375 21570.30233333 148555007 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 6759.2517 13423943 PobA Organic Remediation Aromatics Aromatic carboxylic acid Caulobacter crescentus CB15 5005.7945 6340.34863333 6728.19105 85704595 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. 217 4002.7755 77820050 nirS Nitrogen Denitrification uncultured organism 4081.27955 18363.1811 119859016 nitro Organic Remediation Others Pseudomonas putida W619 3501.77795 146339474 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 3340.4697 63253984 oxdB Organic Remediation Aromatics Nitoaromatics Pseudomonas syringae pv. syringae B728a 3273.07065 118026212 pmoA Carbon cycling Methane Methane oxidation bacteria endosymbiont of Bathymodiolus childressi 8478.33165 55773606 catechol_B Organic Remediation Aromatics Other aromatics Thermus thermophilus HB8 10171.918 37936.268 89516.91015 61810.3838 5705874 exoglucanase Carbon cycling Carbon degradataion Cellulose Clostridium cellulovorans 17054.84595 37335.8822 11439.88385 95116083 amoA Nitrogen Nitrification uncultured crenarchaeote 4727.77393333 6600.4778 7016.42715 50085487 CopA Metal Resistance Copper Acinetobacter sp. ADP1 4354.67646667 29160339 exoglucanase Carbon cycling Carbon degradataion Cellulose Botryosphaeria rhodina 3265.2408 79759.4203 23587.28485 37619.6734 60858837 TerZ Metal Resistance Tellurium Streptomyces noursei ATCC 11455 3390.6365 37527167 amyA Carbon cycling Carbon degradataion Starch Photorhabdus luminescens subsp. laumondii TTO1 5339.38775 21618.26773333 23145.413 15199.66173333 6056.8417 156529216 czcD Metal Resistance Cadmium,Cobalt,Zinc Vibrio harveyi ATCC BAA-1116 3765.23815 31592.44115 25436.78715 21492.2791 27375529 linB Organic Remediation Pesticides related compound Bradyrhizobium japonicum USDA 110 4383.10345 21176.94533333 29086.3759 25241.743 6283.21645 39936374 amyA Carbon cycling Carbon degradataion Starch Rhodopseudomonas palustris CGA009 4721.35256667 10441044 pmoA Carbon cycling Methane Methane oxidation uncultured methanotroph 'type 2' 4867.7364 77732600 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus opacus 5797.0943 13881532 linB Organic Remediation Pesticides related compound Mycobacterium tuberculosis CDC1551 6743.2677 116669002 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 3080.82515 34391462 norB Nitrogen Denitrification Nitrosomonas sp. TA-921i-NH4 7158.26055 23281.91326667 8271.91645 83757783 amyA Carbon cycling Carbon degradataion Starch Salinibacter ruber DSM 13855 3202.96285 77378616 nirS Nitrogen Denitrification uncultured bacterium 3407.94265 113872224 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 7967.12666667 62425588 linB Organic Remediation Pesticides related compound Brevibacterium linens BL2 5006.0893 21020.0851 14997.2627 15380.8627 5235.7411 7712.2942 3820516 phdJ Organic Remediation Aromatics Polycyclic aromatics Burkholderia sp. RP007 3045.076 28900726 Arylest Organic Remediation Aromatics Other aromatics Vibrio parahaemolyticus RIMD 2210633 12970.982 6658.0293 10677.0675 150951377 czcD Metal Resistance Cadmium,Cobalt,Zinc Pichia stipitis CBS 6054 3389.4484 73762956 nirK Nitrogen Denitrification uncultured bacterium 5842.99595 8411.4925 46308014 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7420.59043333 83952813 CopA Metal Resistance Copper Roseovarius nubinhibens ISM 5277.7156 46519935 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8750.2805 9525.25275 13178.90096667 6284.75166667 14601418 ZntA Metal Resistance Zinc Aeropyrum pernix K1 4151.23875 14107.91205 13872512 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans 4465.81095 5108.23906667 40741685 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 3824.1015 83752374 amoA Nitrogen Nitrification uncultured crenarchaeote 10185.5481 12760.1718 12678.4753 16196.98013333 10469.79745 45684 akbF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas sp. CF600 3193.19043333 52785891 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bacillus licheniformis ATCC 14580 4179.048 7655.1836 89512924 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 9424.7488 111611107 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 3610.94645 76803774 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 5029.9864 111219909 phtA Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 4249.85845 115372336 TerC Metal Resistance Tellurium Stigmatella aurantiaca DW4/3-1 6407.07515 9360.1751 59044731 pectinase Carbon cycling Carbon degradataion Pectin uncultured bacterium 3053.8104 84696746 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 3864.9298 13441.04766667 73762984 nirK Nitrogen Denitrification uncultured bacterium 5395.3232 14797.97535 13515.95413333 15889162 TerC Metal Resistance Tellurium Agrobacterium tumefaciens str. C58 7996.2662 40793.3217 11785.58225 67535763 pulA Carbon cycling Carbon degradataion Starch Burkholderia vietnamiensis G4 3656.536 56677433 CopA Metal Resistance Copper Silicibacter pomeroyi DSS-3 3697.9393 16345.51723333 112463043 nirK Nitrogen Denitrification uncultured bacterium 5864.14795 8383.57133333 57233751 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 4274.8884 158523622 dsrA Sulphur sulfite reductase uncultured bacterium 3342.7216 25541.09986667 28894.5419 20278751 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 3421.6749 8149.2586 27382931 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 9366.6019 12980.8977 28467.53676667 108797491 chnB Organic Remediation Other Hydrocarbons Mycobacterium sp. MCS 6032.0391 55978127 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3331.03395 487444 amyA Carbon cycling Carbon degradataion Starch 5060.31145 19472.2394 114228090 nitA Organic Remediation Aromatics Other aromatics Alkalilimnicola ehrlichei MLHE-1 13621.22753333 15607.84883333 145570252 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas stutzeri A1501 3307.25675 110818063 alkK Organic Remediation Others Rhodococcus sp. RHA1 6961.44095 28761.45293333 156869021 ara Carbon cycling Carbon degradataion Hemicellulose Clostridium leptum DSM 753 6484.4266 9769.2558 17173.4018 18505.85166667 4372.94015 154151622 nifH Nitrogen Nitrogen fixation Candidatus Methanoregula boonei 6A8 9375.03566667 24526.2337 78221899 cytochrome Energy process Energy process Geobacter metallireducens GS-15 5706.41365 15821.2976 21040.01225 6689151 CopA Metal Resistance Copper Streptomyces coelicolor A3(2) 4144.47295 118424461 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6408.14125 7675.663 2980896 glucoamylase Carbon cycling Carbon degradataion Starch Aspergillus oryzae 4846.7212 145216180 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium gilvum PYR-GCK 4485.6665 85831189 ara Carbon cycling Carbon degradataion Hemicellulose Leeuwenhoekiella blandensis MED217 2892.56825 74484323 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 12575.6704 7009.82136667 89358404 nitA Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 4590.80886667 14701.0197 8421.8122 73762878 nirK Nitrogen Denitrification uncultured bacterium 3460.02675 15363.70966667 126035057 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 12835.9345 149914858 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. AzwK-3b 3217.9762 118052880 ophC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 6083.9771 26278728 narG Nitrogen Denitrification uncultured bacterium 4304.8272 37520850 linB Organic Remediation Pesticides related compound Gloeobacter violaceus PCC 7421 16396.86045 76039.4584 157368345 atzC Organic Remediation Herbicides related compound Serratia proteamaculans 568 4484.6313 11570.8896 21793.05666667 6279.12585 106893619 ChrA Metal Resistance Chromium Clostridium sp. OhILAs 3415.6375 67541745 czcD Metal Resistance Cadmium,Cobalt,Zinc Aspergillus nidulans FGSC A4 8402.40026667 18803.6755 114326779 CorC Metal Resistance Cobalt Granulibacter bethesdensis CGDNIH1 4179.63586667 117649506 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidothermus cellulolyticus 11B 6022.50763333 14054.81323333 12012.58863333 18698.07575 26989538 silC Metal Resistance Silver Pseudomonas putida KT2440 4328.01665 62084130 nirS Nitrogen Denitrification uncultured bacterium 4307.9767 86284436 pcaG Organic Remediation Aromatics Other aromatics Rhizobium etli CFN 42 6369.89545 30062.3297 11851.2772 9836.5034 55978112 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 16556.10093333 10407.54315 11151.7619 9064.13625 10280.84236667 111020236 cpnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 4610.79555 82947026 nosZ Nitrogen Denitrification Magnetospirillum magneticum AMB-1 3006.60895 4719.45426667 117982224 proO Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 6240.81016667 146324880 czcD Metal Resistance Cadmium,Cobalt,Zinc Aspergillus fumigatus Af293 5664.63185 11824.8909 33099.7118 146311802 catB Organic Remediation Aromatics BTEX and related aromatics Enterobacter sp. 638 4043.65366667 86144287 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. MED222 6703.83703333 38639717 silC Metal Resistance Silver Klebsiella pneumoniae 6760.89655 120592900 vdh Carbon cycling Carbon degradataion Others Polaromonas naphthalenivorans CJ2 7167.7817 10527.5354 4404.9547 139003735 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5358.32385 114737484 merP Metal Resistance Mercury Hyphomonas neptunium ATCC 15444 4093.02245 94550291 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidobacteria bacterium Ellin345 4994.1178 51306.3024 22441.4588 118171608 alkB Organic Remediation Other Hydrocarbons Mycobacterium smegmatis str. MC2 155 18016.923 38907.9903 12905.7789 33772.84253333 13110.2453 150028717 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 3903.67203333 85823169 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 5732.72725 13208.90245 7247.85343333 6533.09683333 8032.05933333 7253.33066667 6453624 trzN Organic Remediation Herbicides related compound Streptomyces coelicolor A3(2) 4280.85586667 10783.6479 13100.72336667 25021.36255 3879.7755 94984197 CopA Metal Resistance Copper Deinococcus geothermalis DSM 11300 7207.47795 6153.2714 6220.53533333 7092.92215 169276 mnp Carbon cycling Carbon degradataion Lignin Phanerochaete chrysosporium 2895.89865 10211.0904 149914873 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. AzwK-3b 6001.59605 118592586 tftH Organic Remediation Aromatics Chlorinated aromatics Stappia aggregata IAM 12614 8306.69485 83837012 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius nubinhibens ISM 2677.26395 77378443 nirS Nitrogen Denitrification uncultured bacterium 4966.8983 37925159 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 9569.3878 10639.787 27753080 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coprinellus congregatus 4293.34965 114195769 CadA Metal Resistance Cadmium Aspergillus terreus NIH2624 4953.71145 34495548 alkK Organic Remediation Others Chromobacterium violaceum ATCC 12472 6297.44925 46329.38375 18182.70485 121553501 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 3794.52495 91777275 amyA Carbon cycling Carbon degradataion Starch Burkholderia xenovorans LB400 7832.71215 66810.2685 24835.66196667 148262878 hydrogenase Energy process Energy process Geobacter uraniumreducens Rf4 7729.86516667 10200.77785 14145.09995 117649128 endochitinase Carbon cycling Carbon degradataion Chitin Acidothermus cellulolyticus 11B 7783.18963333 118164811 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 4303.4725 4918.7711 4824.524 144770 endoglucanase Carbon cycling Carbon degradataion Cellulose 6249.5502 56566208 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3810.9688 26719.68256667 8750.17855 46205560 ara Carbon cycling Carbon degradataion Hemicellulose Magnetospirillum magnetotacticum MS-1 3668.33555 5139556 pcaG Organic Remediation Aromatics Other aromatics Streptomyces coelicolor A3(2) 3883.171 150029546 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium medicae WSM419 4766.01905 52961.8379 35345.75315 30416.0312 72122938 phtA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 2667.0589 56459289 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Idiomarina loihiensis L2TR 8350.8565 5843.74096667 5297.1837 84509704 CopA Metal Resistance Copper Loktanella vestfoldensis SKA53 2886.9889 126740618 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 6823.144625 158318725 TerD Metal Resistance Tellurium Frankia sp. EAN1pec 8828.237 27368.3153 763399 dehH109 Organic Remediation Chlorinated solvents Xanthobacter autotrophicus 3034.01035 10581283 catB Organic Remediation Aromatics BTEX and related aromatics Halobacterium sp. NRC-1 4534.91496667 16811.69025 17631.57355 16888.042 5371.38245 139478547 mer Metal Resistance Mercury uncultured soil bacterium 3610.35765 62558.8901 50844.5515 86607670 phn Organic Remediation Herbicides related compound Synechococcus sp. JA-2-3B'a(2-13) 2964.4233 4630.589 27378061 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 3661.861 62484838 pimF Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 7585.30105 75909257 ChrA Metal Resistance Chromium Anabaena variabilis ATCC 29413 10746.78845 10292.73225 13705.1721 126347329 ureC Nitrogen Ammonification Streptomyces ambofaciens ATCC 23877 6210.31365 11069.8313 14391.42056667 157285710 napA Nitrogen Dissimilatory N reduction uncultured bacterium 17464.62093333 8273.73855 4944.36265 61587226 benAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida 10722.4015 21990.9575 111919316 nosZ Nitrogen Denitrification uncultured bacterium 4691.93485 68550403 sox Sulphur Sulphur oxidation Pelodictyon phaeoclathratiforme BU-1 4191.30225 111918679 nifH Nitrogen Nitrogen fixation uncultured bacterium 3861.2991 35416.89515 15408.16386667 20091186 ppx Phosphorus Phosphorus utilization Methanosarcina acetivorans C2A 7295.96825 12801.01925 10544.69385 118468557 vdh Carbon cycling Carbon degradataion Others Mycobacterium smegmatis str. MC2 155 5572.93265 7646.7285 6905.07765 148829707 czcD Metal Resistance Cadmium,Cobalt,Zinc Erythrobacter sp. SD-21 11804.3249 34719.2028 10155.88543333 30610.25283333 13067.8646 119497641 oxdB Organic Remediation Aromatics Nitoaromatics Neosartorya fischeri NRRL 181 4359.5875 70725655 narG Nitrogen Denitrification Staphylococcus haemolyticus JCSC1435 3684.3613 13710.03593333 78102085 nifH Nitrogen Nitrogen fixation uncultured bacterium 8655.2454 34168.3478 80633.3791 37121.12665 7993.98855 73749283 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 3749.75455 76666784 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11365.13685 14480.24333333 9899.69615 118424485 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5894.42203333 4656.5279 51243029 exoglucanase Carbon cycling Carbon degradataion Cellulose Penicillium occitanis 7226.95515 91693705 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 9309.69755 20445.8418 29652452 narG Nitrogen Denitrification uncultured bacterium 4197.9278 71735530 vanA Carbon cycling Carbon degradataion Others Pseudomonas syringae pv. phaseolicola 1448A 15077.75215 68234677 ureC Nitrogen Ammonification Frankia sp. EAN1pec 6633.15225 6951.6277 46127621 ZntA Metal Resistance Zinc Gibberella zeae PH-1 5643.0645 12909.08975 11161.55296667 17416.4025 151937966 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio sp. Ex25 9636.64265 12415.9827 6880.4312 5625.5719 12054950 LMO Carbon cycling Carbon degradataion Others Rhodococcus erythropolis 7225.36005 35739.36785 15801.7934 126629427 atzB Organic Remediation Herbicides related compound Marinobacter sp. ELB17 5928.7367 65059.30645 28853001 phn Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato str. DC3000 4057.79335 18309.6749 71725918 gyrB other category Phylogenetic marker Exiguobacterium undae 4588.16725 17307.08546667 157315744 dmsA Organic Remediation Others Shewanella sediminis HAW-EB3 6344.7621 121307218 GcdB Organic Remediation Aromatics Aromatic carboxylic acid Thermosinus carboxydivorans Nor1 4297.00075 3839.90355 11037227 pcaG Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens 5800.671 118754068 nrfA Nitrogen Dissimilatory N reduction Shewanella pealeana ATCC 700345 3686.69145 81295745 CopA Metal Resistance Copper Rahnella sp. FRC_X7 3839.4752 14274.31295 63029730 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5115.83615 113877828 ppx Phosphorus Phosphorus utilization Sinorhizobium medicae WSM419 3471.8741 114737563 limEH Carbon cycling Carbon degradataion Others Hyphomonas neptunium ATCC 15444 4457.56155 71907877 ZntA Metal Resistance Zinc Dechloromonas aromatica RCB 3814.87765 17865.17663333 12330.14425 126460067 mer Metal Resistance Mercury Pyrobaculum calidifontis JCM 11548 5327.90496667 18846.89916667 10405.12583333 77460699 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 3545.83825 10674.86356667 109452395 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7243.3516 19272.8525 63096.97745 42951.86996667 9390.7313 10128.52785 114538491 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Fulvimarina pelagi HTCC2506 13200.8385 22134.87753333 29907.05455 12679.60746667 9975.7808 116696414 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 5602.4813 5765.68655 6481.7379 20142095 dsrA Sulphur sulfite reductase uncultured bacterium 7905.1433 10384.80215 117984481 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 4855.05636667 576783 PhaB Organic Remediation Aromatics Aromatic carboxylic acid 4858.97625 148271556 phn Organic Remediation Herbicides related compound Clavibacter michiganensis subsp. michiganensis NCPPB 382 7384.85176667 3589.9768 6919.8877 5490.8707 149128780 ChrA Metal Resistance Chromium Bacteroides caccae ATCC 43185 10536.78905 15030.1451 25657.78326667 28541.46533333 8952.1517 77960011 amyA Carbon cycling Carbon degradataion Starch Yersinia mollaretii ATCC 43969 4426.9827 3944.3742 46908085 ZntA Metal Resistance Zinc Listeria monocytogenes str. 4b F2365 3890.37805 17941.6361 86142874 pmoA Carbon cycling Methane Methane oxidation uncultured alpha proteobacterium 3928.8994 126460064 dsrB Sulphur sulfite reductase Pyrobaculum calidifontis JCM 11548 2592.9312 8357.80235 88931995 CopA Metal Resistance Copper Acidothermus cellulolyticus 11B 6442.60216667 156719038 Se Metal Resistance Selenium Hydrogenobaculum sp. Y04AAS1 3761.98055 56785438 phenol_oxidase Carbon cycling Carbon degradataion Lignin Trametes sp. AH28-2 3824.23615 33601776 napA Nitrogen Dissimilatory N reduction Bordetella bronchiseptica RB50 4907.4585 29466012 norB Nitrogen Denitrification uncultured bacterium 5313.11025 118051342 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 4646.08875 126726584 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodobacterales bacterium HTCC2150 4666.37845 149204374 nifH Nitrogen Nitrogen fixation Roseovarius sp. TM1035 4088.04775 126708155 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 6904.31235 56484.632 29837.9035 11748.6849 37956527 gyrB other category Phylogenetic marker Trichlorobacter thiogenes 7882.8084 12055.69235 27377941 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 3711.79245 112463831 nirK Nitrogen Denitrification uncultured bacterium 5568.11955 11042.8878 21076.85405 29700.35676667 9224.80276667 63256935 pulA Carbon cycling Carbon degradataion Starch Pseudomonas syringae pv. syringae B728a 10872.4302 580822 xylanase Carbon cycling Carbon degradataion Hemicellulose Bacillus pumilus 6878.832 158110555 linB Organic Remediation Pesticides related compound Frankia sp. EAN1pec 6369.15495 113905132 ZntA Metal Resistance Zinc Salinispora tropica CNB-440 3429.6864 152070573 rubisco Carbon cycling Carbon fixation Beggiatoa sp. PS 5021.5268 78046924 czcD Metal Resistance Cadmium,Cobalt,Zinc Xanthomonas campestris pv. vesicatoria str. 85-10 3890.675 26808.09125 12925.8798 41493.49753333 6868.2387 86167202 ChrA Metal Resistance Chromium Synechococcus sp. RS9917 4637.93655 4847.67356667 4635.25325 93355167 CopA Metal Resistance Copper Ralstonia metallidurans CH34 5268.28765 391833 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas sp. 5621.61345 14944.26565 24380.78495 117984470 atzC Organic Remediation Herbicides related compound Burkholderia phymatum STM815 3980.33225 90325009 ZntA Metal Resistance Zinc Photobacterium profundum 3TCK 5933.87465 6387.72145 148260265 alkB Organic Remediation Other Hydrocarbons Acidiphilium cryptum JF-5 4781.6081 35356.85135 21044.1025 120593543 sox Sulphur Sulphur oxidation Polaromonas naphthalenivorans CJ2 3272.3927 290643 CopA Metal Resistance Copper Enterococcus hirae 5410.7322 109290252 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11244.7179 17459.63533333 27869.59515 36390.16965 126628391 pimF Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 14329.2492 44146.23645 11604.37846667 121517074 czcD Metal Resistance Cadmium,Cobalt,Zinc Candidatus Desulfococcus oleovorans Hxd3 18433.20965 12713.92385 15197.00745 89901575 pcc Carbon cycling Carbon fixation Rhodoferax ferrireducens T118 10442.73966667 22506.06525 50002.7648 153802321 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio cholerae MZO-3 19421.91833333 9965.70715 83577923 TerC Metal Resistance Tellurium Rhodospirillum rubrum ATCC 11170 4362.25715 76557465 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 8825.7035 13812.83255 21257.72195 22159.35675 56544355 nitro Organic Remediation Others Zymomonas mobilis subsp. mobilis ZM4 5152.47065 6552.9823 4647.78863333 155964467 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium 4552.22315 112280468 nifH Nitrogen Nitrogen fixation uncultured bacterium 6335.87565 14760.03235 13408.25555 19642.7296 4160334 limEH Carbon cycling Carbon degradataion Others Rhodococcus erythropolis 5971.22235 9383.7145 91781947 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 7755.9162 11173.60973333 62425567 czcD Metal Resistance Cadmium,Cobalt,Zinc Brevibacterium linens BL2 6854.03876667 133912317 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 4158.2281 12865.3244 17957.99875 21015.4747 11594.7423 6663.14815 5975.553 73535041 nifH Nitrogen Nitrogen fixation uncultured bacterium 9991.65845 84510797 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 5485.1959 114541356 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 3656.2105 71065313 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter arcticus 273-4 3440.5285 60686970 ArsA Metal Resistance Arsenic Acidithiobacillus caldus 6038.41493333 88794859 pulA Carbon cycling Carbon degradataion Starch Alteromonas macleodii 'Deep ecotype' 4988.2316 42741714 pbrA Metal Resistance Lead Alcaligenes faecalis 5866.913 14071.8168 95110681 nagK Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 4610.3472 50545986 alkK Organic Remediation Others Yarrowia lipolytica 5021.31085 15945.70005 72162290 amyA Carbon cycling Carbon degradataion Starch Thermobifida fusca YX 7023.7029 11470.48245 6185.7087 5646.3342 60650987 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 7466.1454 23886.8627 9050.53085 7383.75613333 5150.5618 7473.3175 309855 bphA Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida 4755.0661 21351.9173 16703.19985 91779979 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 4660.2013 49602.8765 4844.1795 77463858 nifH Nitrogen Nitrogen fixation Rhodobacter sphaeroides 2.4.1 4431.28113333 67088759 ArsC Metal Resistance Arsenic Azotobacter vinelandii AvOP 4515.75305 54016529 xylG Organic Remediation Aromatics Aromatic carboxylic acid Nocardia farcinica IFM 10152 3424.5684 74318062 CopA Metal Resistance Copper Thiobacillus denitrificans ATCC 25259 5295.3984 157285572 narG Nitrogen Denitrification uncultured bacterium 5080.8249 41609.656 27354314 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 7141.71085 35639.15153333 23177.79675 37848.99266667 9624.08886667 6832.7216 5413.0247 126032285 endochitinase Carbon cycling Carbon degradataion Chitin Hypocrea jecorina 5306.7826 152995325 vanA Carbon cycling Carbon degradataion Others Marinomonas sp. MWYL1 6154.4629 31071471 gyrB other category Phylogenetic marker Anabaena planctonica 6090.502 21968.94353333 119865219 ureC Nitrogen Ammonification Psychromonas ingrahamii 37 3600.39015 4106534 lip Carbon cycling Carbon degradataion Lignin Trametes versicolor 6900.02385 7554.3061 13267.081 28211126 tutFDG Organic Remediation Aromatics BTEX and related aromatics Clostridium tetani E88 3032.34315 13596.8808 7328.70045 115391876 vanA Carbon cycling Carbon degradataion Others Streptomyces sp. NL15-2K 4380.17495 18670.5154 87299380 gyrB other category Phylogenetic marker Terrimonas lutea 6307.2084 10504.91975 16419.0685 85818447 linB Organic Remediation Pesticides related compound Dokdonia donghaensis MED134 9888.18525 22820.9301 8547.21425 91686232 cmtAb Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 4738.3388 93356798 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 3724.32025 16304107 ppk Phosphorus Phosphorus utilization Nodularia spumigena 4765.47665 24560.88355 16229.09883333 4596.79965 119497757 nagG Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 6347.27896667 91684750 phn Organic Remediation Herbicides related compound Rhodopseudomonas palustris BisB5 5254.15235 5321.52975 94313516 ZntA Metal Resistance Zinc Ralstonia metallidurans CH34 5312.2458 10238.4134 28253.93285 38426998 narG Nitrogen Denitrification uncultured bacterium 8887.71505 12116.0256 11025.69685 20829.68695 86750309 CODH Carbon cycling Carbon fixation Rhodopseudomonas palustris HaA2 3333.5781 119898711 nagI Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 5301.8801 148571628 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 6215.28775 148474842 napA Nitrogen Dissimilatory N reduction uncultured bacterium 6321.4561 11666.87345 7248.79403333 91807172 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 6843.7481 58616389 TerC Metal Resistance Tellurium Azoarcus sp. EbN1 3949.1603 39935371 alkK Organic Remediation Others Rhodopseudomonas palustris CGA009 4402.1223 9747.1401 110630500 nifH Nitrogen Nitrogen fixation uncultured soil bacterium 6076.691 88866431 dsrB Sulphur sulfite reductase uncultured bacterium 5565.28575 114705666 rubisco Carbon cycling Carbon fixation Fulvimarina pelagi HTCC2506 3474.7426 145255113 vdh Carbon cycling Carbon degradataion Others Aspergillus niger 6960.29455 84666915 ureC Nitrogen Ammonification Rhodobacterales bacterium HTCC2654 4728.8598 7981.87055 7716.63745 6911973 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Streptomyces coelicolor A3(2) 4474.4434 91780268 endochitinase Carbon cycling Carbon degradataion Chitin Burkholderia xenovorans LB400 8391.4406 36572.77605 29002.3878 115422666 benAB Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 3042.5861 27349176 tftH Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium japonicum USDA 110 8077.83365 17385546 narG Nitrogen Denitrification uncultured bacterium 5981.9421 13523.13735 47571847 ZntA Metal Resistance Zinc Rubrivivax gelatinosus PM1 3523.24605 87301479 nitA Organic Remediation Aromatics Other aromatics Synechococcus sp. WH 5701 3399.98813333 46307958 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5448.37725 30492.19665 91777987 tfdA Organic Remediation Aromatics Chlorinated aromatics Burkholderia xenovorans LB400 10376.036 140713899 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium 4225.19925 84386611 CadA Metal Resistance Cadmium Vibrio splendidus 12B01 3564.7112 13148.13043333 18667.06223333 9208.2176 8510.09646667 149280757 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pedobacter sp. BAL39 4174.3967 124262216 phn Organic Remediation Herbicides related compound Methylibium petroleiphilum PM1 6050.3152 145236889 ChnA Organic Remediation Other Hydrocarbons Aspergillus niger 6076.193 76057573 nosZ Nitrogen Denitrification uncultured bacterium 3742.5039 119898215 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 11067.81515 14465.6821 15176.77693333 77378655 nirS Nitrogen Denitrification uncultured bacterium 6898.9243 36650.70135 24867.2627 119673097 dsrA Sulphur sulfite reductase Pyrobaculum islandicum DSM 4184 4799.68335 14461.6007 33466.60575 32966209 ureC Nitrogen Ammonification Nitrosospira multiformis 10225.39925 9871.2922 73541707 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 3113.83515 19909601 gyrB other category Phylogenetic marker Halomonas pacifica 19024.4261 89054471 ppx Phosphorus Phosphorus utilization Jannaschia sp. CCS1 3876.893 88922410 pcaG Organic Remediation Aromatics Other aromatics Acidiphilium cryptum JF-5 3783.5804 780711 nifH Nitrogen Nitrogen fixation unidentified marine eubacterium 5386.60095 133778504 endochitinase Carbon cycling Carbon degradataion Chitin uncultured bacterium 5163.52675 22932.58975 16144.47565 37770.26863333 7007.0738 13751043 rd Organic Remediation Chlorinated solvents Dehalobacter restrictus 12695.46198333 113726985 pulA Carbon cycling Carbon degradataion Starch Sinorhizobium medicae WSM419 4178.2263 116013318 nirS Nitrogen Denitrification uncultured bacterium 5602.1544 8624.99835 16460.84265 4653.245 77543321 arhA Organic Remediation Aromatics Heterocyclic aromatics Sphingomonas sp. TD4 11557.70466667 29815.7924 10327.44785 7298.03666667 148498414 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 6321.64905 15887672 pimF Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 5542.41826667 8486.56023333 6201.15595 84778345 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11283.23665 7020.2846 458468 endochitinase Carbon cycling Carbon degradataion Chitin 5335.8831 111149581 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 7792.56935 13716.2191 47155106 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 7038.0795 10682.43645 35134.3427 134266532 adpB Organic Remediation Pesticides related compound Geobacillus thermodenitrificans NG80-2 3598.9556 84384707 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 21217.9168 57483.54063333 40601.58373333 148545459 cytochrome Energy process Energy process Pseudomonas putida F1 6791.31855 12087.3392 30619.89423333 24575104 dehH Organic Remediation Chlorinated solvents Streptomyces globisporus 4734.55115 152982901 dehH109 Organic Remediation Chlorinated solvents Janthinobacterium sp. Marseille 7195.1676 12882.8848 14134.12035 11731.96125 54302935 pimF Organic Remediation Aromatics Aromatic carboxylic acid Photobacterium profundum SS9 6120.43045 115524425 czcD Metal Resistance Cadmium,Cobalt,Zinc Rhodopseudomonas palustris BisA53 6187.61126667 4633.8383 4435.9344 116098081 cadBD Metal Resistance Cadmium Lactobacillus brevis ATCC 367 6055.4643 20601.38086667 14608.6389 15823.7219 4773.27425 116668780 arsB Metal Resistance Arsenic Arthrobacter sp. FB24 3539.6646 115423916 alkK Organic Remediation Others Bordetella avium 197N 4005.6561 10648.27465 3157570 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 3591.5082 12326.42465 1652273 POBMO Organic Remediation Aromatics Aromatic carboxylic acid Synechocystis sp. PCC 6803 7090.2069 34502.4012 36547.29183333 11977.9981 9187.65005 10507.94376667 116608709 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Arthrobacter sp. FB24 4271.64825 38151.06585 21841.0561 145619313 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacter bemidjiensis Bem 4171.50925 22295747 Al Metal Resistance Aluminum Thermosynechococcus elongatus BP-1 9352.85365 13039.8712 8150.73125 23808.25395 6836.48845 114537304 catB Organic Remediation Aromatics BTEX and related aromatics Fulvimarina pelagi HTCC2506 6374.0693 71557332 CopA Metal Resistance Copper Pseudomonas syringae pv. phaseolicola 1448A 5113.9722 9296.6522 5633.1836 10670.1876 67919424 ppx Phosphorus Phosphorus utilization Chlorobium limicola DSM 245 4513.5922 13908.15695 146398884 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter uraniumreducens Rf4 4123.2419 4470.5559 91708977 CopA Metal Resistance Copper Methylobacillus flagellatus KT 4483.17093333 17764.7514 7386.81605 111224161 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 4677.14205 7634.80493333 6995.39215 149819232 pcc Carbon cycling Carbon fixation Plesiocystis pacifica SIR-1 4092.21073333 15073413 alkK Organic Remediation Others Sinorhizobium meliloti 4700.04105 58000909 gyrB other category Phylogenetic marker Gluconobacter oxydans 621H 3873.73155 68240997 ppx Phosphorus Phosphorus utilization Prosthecochloris aestuarii DSM 271 6436.8232 12399.1099 9940.5186 20057.04405 62390077 narG Nitrogen Denitrification Corynebacterium glutamicum ATCC 13032 3842.29435 34225.82265 25061.72353333 49061 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus rhodochrous 10018.76935 68567513 pcpE Organic Remediation Herbicides related compound Sulfolobus acidocaldarius DSM 639 13648.03703333 12823.6584 31846.01866667 84366045 pcaG Organic Remediation Aromatics Other aromatics Xanthomonas oryzae pv. oryzae MAFF 311018 8648.6654 21204.62843333 6740.05975 17743934 catB Organic Remediation Aromatics BTEX and related aromatics Agrobacterium tumefaciens str. C58 5088.2139 119387117 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 3945.1102 78485771 czcD Metal Resistance Cadmium,Cobalt,Zinc Thiomicrospira crunogena XCL-2 4672.2174 158432766 CopA Metal Resistance Copper Eubacterium dolichum DSM 3991 5194.2213 7553.3579 12437.217 108764717 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Rubrobacter xylanophilus DSM 9941 3594.0814 121715826 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus clavatus NRRL 1 27111.65236667 17034.26735 12585.65016667 90021349 endochitinase Carbon cycling Carbon degradataion Chitin Saccharophagus degradans 2-40 10851.9961 78093574 narG Nitrogen Denitrification uncultured bacterium 5424.00715 14799.09725 16165.32743333 5850.2323 56696844 pimF Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 9596.16806667 12052.36785 9031.21526667 15094.32943333 11615.227 7225.9041 154161121 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 4459.1598 84503520 ChrA Metal Resistance Chromium Oceanicola batsensis HTCC2597 4217.02755 83576301 silC Metal Resistance Silver Rhodospirillum rubrum ATCC 11170 3302.53545 144900817 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum gryphiswaldense MSR-1 3688.11455 20508.4919 6855.24735 13662.5846 7049.29793333 15077475 dsrB Sulphur sulfite reductase Desulfovibrio desulfuricans subsp. desulfuricans 5884.41605 7284.31775 110287060 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 7337.39536667 48927.66896667 35197.09503333 10210.81935 5042367 tfdA Organic Remediation Aromatics Chlorinated aromatics Pectobacterium carotovorum 4478.60475 5140.9287 2353018 gyrB other category Phylogenetic marker Shewanella gelidimarina 3565.34245 4514457 gyrB other category Phylogenetic marker Acinetobacter johnsonii 3921.0729 8833.49385 50541861 nirK Nitrogen Denitrification uncultured bacterium 4550.17755 149279875 endochitinase Carbon cycling Carbon degradataion Chitin Pedobacter sp. BAL39 3354.1631 108758234 gyrB other category Phylogenetic marker Myxococcus xanthus DK 1622 8717.459 28627875 CadA Metal Resistance Cadmium Halobacillus sp. MSA 234 3722.234 8348.0182 133778516 endochitinase Carbon cycling Carbon degradataion Chitin uncultured bacterium 4824.44265 6302.1124 146188554 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4154.40865 17283.37596667 157851146 nifH Nitrogen Nitrogen fixation uncultured bacterium 6302.4575 11193.00225 29652656 narG Nitrogen Denitrification uncultured bacterium 5204.0456 50880266 pmoA Carbon cycling Methane Methane oxidation uncultured methanotrophic alpha proteobacterium 3804.68635 9134.91475 94500786 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacter sp. RED65 4807.59745 14491.43705 6730.3478 118049029 ChrA Metal Resistance Chromium Comamonas testosteroni KF-1 4874.4887 21017.47475 10913.49245 45960.29456667 110827134 pimF Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 6641.76415 20174.34016667 17530.21903333 6745.38345 113529203 alkK Organic Remediation Others Ralstonia eutropha H16 9777.77586667 4758.02745 14161300 amoA Nitrogen Nitrification Nitrosomonas sp. TA-921i-NH4 4288.89805 89349520 ureC Nitrogen Ammonification Xanthobacter autotrophicus Py2 7058.8106 32228.25006667 24685.16953333 29607602 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 6403.08885 21923.90346667 13312.66585 43377.80546667 119501519 endochitinase Carbon cycling Carbon degradataion Chitin Neosartorya fischeri NRRL 181 3858.18655 29892861 alkJ Organic Remediation Other Hydrocarbons Rhodococcus ruber 10246.30615 17493.75406667 5104.44485 114562036 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 4144.2883 115368031 alkK Organic Remediation Others Stigmatella aurantiaca DW4/3-1 5302.49595 45649067 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. CIB 3327.02125 9392667 xylA Carbon cycling Carbon degradataion Hemicellulose Thermoanaerobacter yonseiensis 5211.4985 13914.6023 133912605 alkK Organic Remediation Others Saccharopolyspora erythraea NRRL 2338 5613.15936667 32440.38615 42271.86725 13705.9647 4648.7413 59479972 trzN Organic Remediation Herbicides related compound Vibrio fischeri ES114 4865.25385 56551299 ppx Phosphorus Phosphorus utilization Zymomonas mobilis subsp. mobilis ZM4 7160.6066 33243151 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7381.4734 89573724 endochitinase Carbon cycling Carbon degradataion Chitin Lecanicillium lecanii 6824.06876667 8698.1066 84778502 gyrB other category Phylogenetic marker Sodalis glossinidius str. 'morsitans' 3514.51985 69297606 ChrA Metal Resistance Chromium Silicibacter sp. TM1040 2999.8837 157911963 cellobiase Carbon cycling Carbon degradataion Cellulose Dinoroseobacter shibae DFL 12 11066.9171 81009.5341 41250.2782 4540.33965 77953180 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 3233.8856 8866.43435 84042969 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 6226.41573333 7356.60925 153005607 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 3423.9797 86565795 Xamo Organic Remediation Other Hydrocarbons Frankia sp. CcI3 4857.121 6061.08945 119819014 catB Organic Remediation Aromatics BTEX and related aromatics Stenotrophomonas maltophilia R551-3 3276.60475 110592574 catB Organic Remediation Aromatics BTEX and related aromatics Acidovorax sp. JS42 8321.00585 19072.0043 7232.52065 146194024 tfdA Organic Remediation Aromatics Chlorinated aromatics Bradyrhizobium sp. ORS278 5558.4123 115401944 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus terreus NIH2624 4598.59905 6577.26135 88643351 dsrA Sulphur sulfite reductase uncultured prokaryote 7711.7715 19681.4341 9478.9716 26304.74163333 7959.14935 94471313 narG Nitrogen Denitrification uncultured bacterium 6252.43505 30215.33245 26604.12403333 37703773 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coprinopsis cinerea 4328.49865 157285395 nosZ Nitrogen Denitrification uncultured bacterium 4397.28565 11530.7096 89513036 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 7445.98955 20049.044 24242.245 70732485 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 5431.92725 15726.22133333 11221.789 15830.69348333 72121606 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 6607.0009 12692.87325 4317.61893333 71023925 ureC Nitrogen Ammonification Ustilago maydis 521 3077.48415 111020733 alkK Organic Remediation Others Rhodococcus sp. RHA1 8038.2132 11358.7791 5036.23245 3906.2531 6120.59615 34496914 alkK Organic Remediation Others Chromobacterium violaceum ATCC 12472 18841.1525 50132.13425 49471.36343333 104780947 CopA Metal Resistance Copper Pseudomonas entomophila L48 6391.5407 23380.89826667 133915046 gdh Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 5557.7096 10515.8695 114327008 exaA Organic Remediation Chlorinated solvents Granulibacter bethesdensis CGDNIH1 2765.298 5291.3108 110620422 rubisco Carbon cycling Carbon fixation uncultured methanogenic archaeon 6950.2396 67988497 CopA Metal Resistance Copper Kineococcus radiotolerans SRS30216 9415.2422 34497940 pimF Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 6346.2262 12064.0084 7197.65966667 8090.1392 77996979 dsrA Sulphur sulfite reductase Carboxydothermus hydrogenoformans Z-2901 3483.24865 118472931 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium smegmatis str. MC2 155 8482.3612 10735.2216 9779.6517 4853.6676 5426.55515 28851402 TerZ Metal Resistance Tellurium Pseudomonas syringae pv. tomato str. DC3000 11487.77185 20948.614 89512454 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 3791.62505 146338520 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 5184.0178 75606.0721 77895.5837 108765878 CadA Metal Resistance Cadmium Rubrobacter xylanophilus DSM 9941 7254.50645 9376.0107 12453.4826 10685.96305 111115278 ChrA Metal Resistance Chromium Borrelia afzelii PKo 4877.72975 18129.2948 11940.96995 91975500 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 6613.49175 18536.13055 24338.1235 18779.6912 7506.16625 54019345 ArsC Metal Resistance Arsenic Nocardia farcinica IFM 10152 3055.5332 83017297 gyrB other category Phylogenetic marker Microbulbifer elongatus 4449.11615 7321.7613 12038.6491 91710887 ZntA Metal Resistance Zinc Methylobacillus flagellatus KT 7434.25595 14603.76976667 11514.86395 7789.4507 62423337 trzN Organic Remediation Herbicides related compound Brevibacterium linens BL2 5558.73955 89143190 gyrB other category Phylogenetic marker Microbacterium ketosireducens 8239.76756667 109699981 amyA Carbon cycling Carbon degradataion Starch Pseudoalteromonas atlantica T6c 5908.40165 23491841 gyrB other category Phylogenetic marker Corynebacterium efficiens YS-314 7210.483 111147421 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 5135.2237 146406180 nmoA Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 9031.03865 10196.93145 8556.147 20719.63326667 16057.32195 6342.06726667 25028538 gdh Nitrogen Ammonification Corynebacterium efficiens YS-314 5986.48835 82948308 ZntA Metal Resistance Zinc Magnetospirillum magneticum AMB-1 5967.9371 29466088 norB Nitrogen Denitrification uncultured bacterium 5214.2077 110556603 CopA Metal Resistance Copper Colletotrichum lagenarium 12134.1982 13183.89546667 27597.5635 14601.809 126590375 ChrA Metal Resistance Chromium Bacillus sp. B14905 3519.92115 84494383 nasA Nitrogen Assimilatory N reduction Janibacter sp. HTCC2649 3797.34085 14621.8114 16061.99176667 126316318 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida GB-1 6888.01395 119391555 narG Nitrogen Denitrification uncultured bacterium 10260.02536667 35761.9729 21227.83935 30357.88686667 83596088 CopA Metal Resistance Copper uncultured marine bacterium Ant4D5 18865.1832 7835.53895 17052.83213333 84664257 exaA Organic Remediation Chlorinated solvents Rhodobacterales bacterium HTCC2654 4116.63795 7921.43785 6362.64375 56809489 nifH Nitrogen Nitrogen fixation uncultured bacterium 4533.1374 11413.808 10406.3875 82568646 BADH Organic Remediation Aromatics Other aromatics Rhodococcus erythropolis 10128.61065 10865.601 8778.43846667 7310.261 66964726 FTHFS Carbon cycling Acetogenesis Arthrobacter sp. FB24 3821.55415 25142.0087 36662.8375 15613428 alkH Organic Remediation Other Hydrocarbons Bacillus halodurans C-125 5636.3075 88936998 mer Metal Resistance Mercury Geobacter uraniumreducens Rf4 5520.82005 25811.78513333 13739.0297 14431.0943 21436536 sox Sulphur Sulphur oxidation Paracoccus denitrificans 3834.79615 7359.64895 10359.1488 4599.76345 126729428 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 2906.4382 76164407 linB Organic Remediation Pesticides related compound Chloroflexus aurantiacus J-10-fl 5979.02445 118029817 ALN Organic Remediation Others Burkholderia phymatum STM815 4989.26045 88864893 phn Organic Remediation Herbicides related compound Jannaschia sp. CCS1 3783.452 148644906 pmoA Carbon cycling Methane Methane oxidation uncultured methanotrophic proteobacterium 3777.69005 156868601 cda Carbon cycling Carbon degradataion Starch Clostridium leptum DSM 753 4711.81885 1322077 phenol_oxidase Carbon cycling Carbon degradataion Lignin Trametes villosa 6490.66875 32364176 gyrB other category Phylogenetic marker Bisgaard Taxon 14 3933.63585 133740357 ArsC Metal Resistance Arsenic Herminiimonas arsenicoxydans 4944.1491 14871.39655 10790.3924 9125.6394 4261.6377 6526.5124 6528.27815 6460756 ureC Nitrogen Ammonification Deinococcus radiodurans R1 6304.63033333 15059.68545 11919.31126667 148834961 pcc Carbon cycling Carbon fixation Vibrio shilonii AK1 4804.4508 31812.66743333 22356.40785 19138.40893333 90335216 gyrB other category Phylogenetic marker Aurantimonas sp. SI85-9A1 7302.51725 90413947 CadA Metal Resistance Cadmium Photobacterium profundum 3TCK 6415.4329 13981.82475 10820.4106 157914087 CopA Metal Resistance Copper Dinoroseobacter shibae DFL 12 5305.1298 88792271 atzA Organic Remediation Herbicides related compound Nitrococcus mobilis Nb-231 9298.7755 69934127 CadA Metal Resistance Cadmium Paracoccus denitrificans PD1222 6803.33976667 27097.9368 19695.24813333 110822274 ppx Phosphorus Phosphorus utilization Rhodococcus sp. RHA1 5110.99745 41136.61406667 6369.351 86748228 czcA Metal Resistance Cadmium,Cobalt,Zinc Rhodopseudomonas palustris HaA2 2831.94133333 66848881 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus fumigatus Af293 5377.48355 156861718 pulA Carbon cycling Carbon degradataion Starch Bacteroides uniformis ATCC 8492 3286.24205 149783087 nirK Nitrogen Denitrification uncultured bacterium 4949.11815 31129.3259 25207.8694 113968643 cytochrome Energy process Energy process Shewanella sp. MR-4 4000.9772 157679091 rubisco Carbon cycling Carbon fixation Acidithiobacillus ferrooxidans 3020.22365 145965194 endochitinase Carbon cycling Carbon degradataion Chitin Vibrionales bacterium SWAT-3 8213.71405 57844.04755 21677.33533333 41358.748 5926.24103333 8456.19685 145241243 linC Organic Remediation Pesticides related compound Aspergillus niger 9767.96063333 118424487 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4924.3146 22019.56155 25280.72495 7070.29315 6014526 dsrA Sulphur sulfite reductase Solar Lake Mat Clone50 3378.07125 78364483 SilA Metal Resistance Silver Thiomicrospira crunogena XCL-2 9251.30785 45209.91275 20792.16905 6457.61015 29652552 narG Nitrogen Denitrification uncultured bacterium 3281.96915 12378.7919 9469.91446667 19154.19155 110283401 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 7865.2222 21094.93123333 10888.65623333 9377.6603 6314.40655 148254171 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 4263.49256667 8327.99806667 13538.18166667 11722.4944 5765.7432 5772.35665 119226142 gyrB other category Phylogenetic marker Arthrobacter globiformis 5875.1935 18419.6924 118027528 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 2892.5997 119670672 xylF Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 5642.48925 82618383 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4067.9684 8220.2777 9957143 phenol_oxidase Carbon cycling Carbon degradataion Lignin Polyporus ciliatus 4100.33323333 94470993 nifH Nitrogen Nitrogen fixation uncultured bacterium 4381.211 14588.72515 20804135 phn Organic Remediation Herbicides related compound Mesorhizobium loti 6007.0542 15176.943 8533.32715 10622.81906667 4696.04465 27376476 cellobiase Carbon cycling Carbon degradataion Cellulose Bradyrhizobium japonicum USDA 110 4394.53445 3492.2715 78223053 cytochrome Energy process Energy process Geobacter metallireducens GS-15 6148.4564 151586713 pcc Carbon cycling Carbon fixation Halorubrum lacusprofundi ATCC 49239 3488.1337 10878.96035 6475.14713333 9063.8046 4580557 tfdB Organic Remediation Aromatics Chlorinated aromatics unidentified bacterium 202NPUT 12856.3478 15961.25423333 8426.27436667 145235731 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 5237.67813333 18197.2524 4412.63865 31087954 endochitinase Carbon cycling Carbon degradataion Chitin Puccinia triticina 5428.13095 119954834 phtA Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 3634.5404 89214401 nagK Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas alcaligenes 4451.6251 9808.8672 11918.75103333 147919724 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon RC-I 3818.5767 14022839 nmoA Organic Remediation Aromatics Nitoaromatics Mesorhizobium loti MAFF303099 4361.05055 71374.08135 50563.7893 119459615 chnB Organic Remediation Other Hydrocarbons marine gamma proteobacterium HTCC2080 19686.1024 16281.21453333 126013262 mcrA Carbon cycling Methane Methane production uncultured archaeon 3717.82035 6863.9788 87239939 akbF Organic Remediation Aromatics BTEX and related aromatics Nocardioides aromaticivorans 4590.38733333 14520.42923333 8900.0085 118438387 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Stappia aggregata IAM 12614 6097.8859 114329084 nmoA Organic Remediation Aromatics Nitoaromatics Granulibacter bethesdensis CGDNIH1 3343.85905 78609680 CopA Metal Resistance Copper Lactobacillus sakei subsp. sakei 23K 7597.6577 83842013 xylA Carbon cycling Carbon degradataion Hemicellulose Sulfitobacter sp. NAS-14.1 9568.06465 15345.9095 16246.5497 33708.5903 6494.76703333 7582.9387 46371035 nosZ Nitrogen Denitrification uncultured bacterium 16725.1092 7320.6134 10267.63495 28974744 dsrB Sulphur sulfite reductase uncultured bacterium 4397.4921 126641064 ureC Nitrogen Ammonification Acinetobacter baumannii ATCC 17978 6031.8391 68345516 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 4255.5136 91700848 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 4511.28 92112446 pcaG Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 5341.6077 8875.69225 6937.57175 51855540 dmsA Organic Remediation Others Symbiobacterium thermophilum IAM 14863 3917.54325 11592.9384 8247.01475 119539019 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 5502.4432 73541593 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 5193.7382 7512.30315 5064.22455 4784.474 126708356 dehH109 Organic Remediation Chlorinated solvents Sagittula stellata E-37 18965.0421 90020209 pulA Carbon cycling Carbon degradataion Starch Saccharophagus degradans 2-40 8242.3861 126348649 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces ambofaciens ATCC 23877 4353.62875 3934.58685 110823059 pcc Carbon cycling Carbon fixation Rhodococcus sp. RHA1 5605.03865 119226156 gyrB other category Phylogenetic marker Rhodococcus zopfii 8707.07025 9390.74865 120326888 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 3450.77595 216215 isopullulanase Carbon cycling Carbon degradataion Starch Arthrobacter sp. 5986.00765 17520.7623 34248.3582 23978284 gyrB other category Phylogenetic marker Chroococcidiopsis sp. PCC 7431 4358.44635 118052716 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 6488.30445 10366.7741 146192311 gdh Nitrogen Ammonification Bradyrhizobium sp. ORS278 7076.80195 109632247 nirK Nitrogen Denitrification uncultured bacterium 9743.24785 88866373 dsrB Sulphur sulfite reductase bacterium LS1415 3053.11655 46307998 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6786.1104 145228843 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 2952.322 91068826 pcc Carbon cycling Carbon fixation Rickettsia bellii RML369-C 8768.0823 11318.38825 67541162 xylanase Carbon cycling Carbon degradataion Hemicellulose Aspergillus nidulans FGSC A4 5817.39305 27868.97165 86158438 TerC Metal Resistance Tellurium Anaeromyxobacter dehalogenans 2CP-C 4429.46775 10585.3964 12168.0533 4818.59665 111610916 ureC Nitrogen Ammonification Verminephrobacter eiseniae EF01-2 3775.59885 32281.1225 12834.5569 14768.04946667 118665715 nmoA Organic Remediation Aromatics Nitoaromatics Delftia acidovorans SPH-1 17043.4573 23584.2213 41717.46935 5279.5288 62512302 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4053.10065 83576254 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Rhodospirillum rubrum ATCC 11170 3904.90935 126105541 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 3870.53315 6002.42405 89145072 ppk Phosphorus Phosphorus utilization Microbacterium esteraromaticum 9731.36185 21233.3956 15752.02155 9578.92123333 5837.5487 156631762 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 2873.7599 129279074 nifH Nitrogen Nitrogen fixation uncultured bacterium 4841.11575 25320.43213333 18006.3451 31129.3604 67088243 amyA Carbon cycling Carbon degradataion Starch Azotobacter vinelandii AvOP 4026.68675 19837.63665 8082.34085 12560.3097 117986968 nmoA Organic Remediation Aromatics Nitoaromatics Burkholderia phymatum STM815 12585.15245 43512.16315 39484.35385 38695.24543333 6506.58095 6314.1956 88866201 PobA Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 4656.57045 121711156 oxdB Organic Remediation Aromatics Nitoaromatics Aspergillus clavatus NRRL 1 7579.9597 150257382 cellobiase Carbon cycling Carbon degradataion Cellulose Victivallis vadensis ATCC BAA-548 6591.60206667 108802861 gyrB other category Phylogenetic marker Rubrobacter xylanophilus DSM 9941 3811.74695 7703.50656667 74038486 nirK Nitrogen Denitrification uncultured bacterium 5991.78996667 42399.12305 9415.44476667 157372795 tfdA Organic Remediation Aromatics Chlorinated aromatics Serratia proteamaculans 568 3496.56436667 3277.37445 116186435 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio sp. Ex25 4591.57075 54310848 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. JS46 7921.5298 6558.96355 115371850 ppx Phosphorus Phosphorus utilization Stigmatella aurantiaca DW4/3-1 4261.1327 28401264 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium 5535.2384 10456.38755 6551.20465 56909125 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 2837.85345 88777409 PobA Organic Remediation Aromatics Aromatic carboxylic acid Reinekea sp. MED297 7261.90983333 46917306 nirS Nitrogen Denitrification uncultured bacterium 5234.7388 19825.26425 7726.51715 13209.6958 157679058 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 56729.61886667 26287.60133333 12212.1068 20906296 czcD Metal Resistance Cadmium,Cobalt,Zinc Methanosarcina mazei Go1 5120.68 5824.85986667 7145.0517 7210.17715 23491952 nagG Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium efficiens YS-314 3972.8753 91798038 exaA Organic Remediation Chlorinated solvents Chromohalobacter salexigens DSM 3043 5896.64475 11014.48 93277208 gyrB other category Phylogenetic marker Streptomyces sp. MC3 4919.69935 5758.17545 5697.04345 111185878 gyrB other category Phylogenetic marker Rhodococcus equi 3539.97375 6555.89705 8482.95475 89357952 ChrA Metal Resistance Chromium Xanthobacter autotrophicus Py2 4284.60225 8455.75066667 126172505 cytochrome Energy process Energy process Shewanella baltica OS155 4912.52545 7607.0906 8276.1641 116694649 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 8313.71585 5490.46715 83845803 nhh Organic Remediation Aromatics Nitoaromatics Sulfitobacter sp. EE-36 5701.4738 6992.2539 5851794 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. KN1 7871.45785 5061.73775 7623.83535 5991.75173333 148474738 napA Nitrogen Dissimilatory N reduction uncultured bacterium 5438.8791 7694.24533333 4468.7956 109454988 nirS Nitrogen Denitrification Roseobacter denitrificans OCh 114 3631.8407 95116137 amoA Nitrogen Nitrification uncultured crenarchaeote 11221.8738 14306.65685 110549451 tutFDG Organic Remediation Aromatics BTEX and related aromatics Geobacter sp. FRC-32 4591.48865 116743242 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 4590.46623333 19458.7979 85704032 pcaG Organic Remediation Aromatics Other aromatics Roseovarius sp. 217 11059.10015 42582.3718 19528.73163333 14717.3025 154297971 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Botryotinia fuckeliana B05.10 7489.86225 14754.57185 148499857 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 6006.95925 17967.2967 110551316 rubisco Carbon cycling Carbon fixation Methanoculleus marisnigri JR1 3614.36775 114226466 atzA Organic Remediation Herbicides related compound Alkalilimnicola ehrlichei MLHE-1 5822.98485 15960.44355 6885.57445 86136892 linB Organic Remediation Pesticides related compound Roseobacter sp. MED193 3735.0025 8881.29683333 9039.84865 91688785 czcD Metal Resistance Cadmium,Cobalt,Zinc Burkholderia xenovorans LB400 5246.6828 15478.6061 17281.58786667 4755.23875 149277354 catB Organic Remediation Aromatics BTEX and related aromatics Pedobacter sp. BAL39 4163.42495 16403.41375 84553.5026 53954.0907 146410634 SilA Metal Resistance Silver Bradyrhizobium sp. BTAi1 4050.1378 110816913 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus sp. RHA1 5672.9211 12224.5705 110819594 ChrA Metal Resistance Chromium Rhodococcus sp. RHA1 2628.5627 23129.0837 13408.68665 16796.07393333 3543.8305 118463960 linC Organic Remediation Pesticides related compound Mycobacterium avium 104 4798.58695 90420342 ureC Nitrogen Ammonification Aurantimonas sp. SI85-9A1 5278.1796 110823471 alkK Organic Remediation Others Rhodococcus sp. RHA1 5051.10445 15157168 ChnA Organic Remediation Other Hydrocarbons Agrobacterium tumefaciens str. C58 4224.54875 4654.40445 148838457 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Vibrio shilonii AK1 4936.8805 15192.3321 25559.6881 28587.91683333 99083257 nifH Nitrogen Nitrogen fixation uncultured bacterium 5368.56395 24435.08 11380.89875 18614.77203333 119961079 ara Carbon cycling Carbon degradataion Hemicellulose Arthrobacter aurescens TC1 6686.23533333 25935.98765 32283.3031 13763.05515 5547.01435 56477216 BADH Organic Remediation Aromatics Other aromatics Azoarcus sp. EbN1 5180.8407 4908.04815 5902.07333333 38199371 narG Nitrogen Denitrification Corynebacterium diphtheriae 4605.87125 52784556 xylC Organic Remediation Aromatics BTEX and related aromatics Bacillus licheniformis ATCC 14580 4621.17875 11128.33483333 5211.0951 4624.2391 5524.87695 89889860 pimF Organic Remediation Aromatics Aromatic carboxylic acid Flavobacteria bacterium BBFL7 7087.147 30138965 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrosomonas europaea ATCC 19718 3909.6822 153004239 cytochrome Energy process Energy process Anaeromyxobacter sp. Fw109-5 4785.41805 9151.7323 7851.9559 70733517 gyrB other category Phylogenetic marker Pseudomonas fluorescens Pf-5 4929.5747 10545.00475 4490766 endoglucanase Carbon cycling Carbon degradataion Cellulose Bacillus sp. BP-23 5028.1902 17068.29685 8307.2568 110735167 ZntA Metal Resistance Zinc Mannheimia haemolytica 4280.0603 68203850 pcc Carbon cycling Carbon fixation Frankia sp. EAN1pec 5764.09115 9538.4306 91696106 nagI Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 9008.98505 91782304 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 3812.1663 126718419 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 4466.74465 156189488 pulA Carbon cycling Carbon degradataion Starch Methylobacterium chloromethanicum CM4 11059.39855 118038546 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phytofirmans PsJN 4379.49105 55772088 ZntA Metal Resistance Zinc Thermus thermophilus HB8 7440.34725 7208.03356667 8230.6595 37496867 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 3739.54475 29833938 amyA Carbon cycling Carbon degradataion Starch Streptomyces avermitilis MA-4680 9362.07046667 3059212 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus erythropolis 4252.39985 15345.05543333 9529.11856667 53987088 ureC Nitrogen Ammonification Arthrobacter sp. T11-6 4404.58495 119641184 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 4026.88655 115399956 cellobiase Carbon cycling Carbon degradataion Cellulose Aspergillus terreus NIH2624 4692.9146 120555038 pcc Carbon cycling Carbon fixation Marinobacter aquaeolei VT8 5732.4624 28313.37885 21402.31743333 157404688 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 4706.3625 5919.28205 120593982 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 6850.80053333 117648072 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidothermus cellulolyticus 11B 6017.73895 9397.79583333 60493057 linC Organic Remediation Pesticides related compound Bacteroides fragilis NCTC 9343 3471.04095 94471185 narG Nitrogen Denitrification uncultured bacterium 6364.4958 5279.02115 83404778 nirS Nitrogen Denitrification uncultured organism 10260.3478 7929.1977 154311242 tftH Organic Remediation Aromatics Chlorinated aromatics Botryotinia fuckeliana B05.10 4380.3354 84516744 pimF Organic Remediation Aromatics Aromatic carboxylic acid Loktanella vestfoldensis SKA53 6342.57165 20417.61356667 149364111 phenol_oxidase Carbon cycling Carbon degradataion Lignin Pholiota nameko 7139.5061 12507.5904 75676104 ArsC Metal Resistance Arsenic Nitrobacter winogradskyi Nb-255 4583.921 5626.64823333 34557896 ZntA Metal Resistance Zinc Wolinella succinogenes DSM 1740 5271.7954 20902.33526667 10576.196 116696222 PobA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 4225.09653333 91807174 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 4365.15425 8516.5773 38569300 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. FL2 6617.5267 14167.61683333 25620.4656 14118.0092 29652564 narG Nitrogen Denitrification uncultured bacterium 3813.4606 158334138 CopA Metal Resistance Copper Acaryochloris marina MBIC11017 4430.60045 18029.1621 39934830 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 3171.1924 86608960 ppx Phosphorus Phosphorus utilization Synechococcus sp. JA-2-3B'a(2-13) 6011.6473 145557717 ChrA Metal Resistance Chromium Rhodobacter sphaeroides ATCC 17025 3826.92265 17050.1059 26389.2736 148555001 tfdA Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 7672.0651 88866417 dsrB Sulphur sulfite reductase uncultured bacterium 3254.3577 13814430 tmoABE Organic Remediation Aromatics BTEX and related aromatics Sulfolobus solfataricus P2 6998.6548 38465.8136 17359.6482 9554.62025 157917738 TerC Metal Resistance Tellurium Salinispora arenicola CNS-205 7955.2361 84778383 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7756.3315 26849.6934 12192.2698 32307941 narG Nitrogen Denitrification uncultured bacterium 3728.307 10239.2979 7406.8929 7221.7225 148498930 atzA Organic Remediation Herbicides related compound Sphingomonas wittichii RW1 3961.61265 113527710 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 9172.4578 5850.747 7158.55255 115394382 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 3126.12805 56962111 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 5625.2222 91787789 phtA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 3486.93695 12646.9886 35210327 gyrB other category Phylogenetic marker Alicyclobacillus acidocaldarius 18623.55396667 5796.955 53791231 mnp Carbon cycling Carbon degradataion Lignin Trametes cervina 3069.2739 12620.74585 15465.87774 139003556 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 8686.9008 91807180 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 4902.7748 58176536 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coriolopsis gallica 6636.92005 37289.785 19059.40276667 84499456 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 5958.5642 15226.69465 5465.1504 6826.2481 46908513 nmoA Organic Remediation Aromatics Nitoaromatics Listeria monocytogenes str. 4b F2365 5590.65115 88702641 nosZ Nitrogen Denitrification uncultured soil bacterium 6222.01185 18269.53203333 85715525 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrobacter sp. Nb-311A 3205.47235 94421968 chnB Organic Remediation Other Hydrocarbons Sphingomonas sp. SKA58 14197.19746667 26335.68273333 95111183 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas 5849.55716667 12255.25695 17933.4191 31215.09533333 9535.27156667 85681949 gyrB other category Phylogenetic marker Oceanimonas denitrificans 4252.32135 5420.02085 110632212 nirK Nitrogen Denitrification uncultured bacterium 4355.0521 16001.41025 30640.4526 38683390 PobA Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium ammoniagenes 4035.65285 44729 mcrA Carbon cycling Methane Methane production Methanococcus voltae 5171.0975 85697641 czcD Metal Resistance Cadmium,Cobalt,Zinc Nitrobacter sp. Nb-311A 7817.17433333 12634.04025 133912646 ureC Nitrogen Ammonification Saccharopolyspora erythraea NRRL 2338 4337.83855 25169.1528 16634.12446667 50818137 mcrA Carbon cycling Methane Methane production Methanomethylovorans thermophila 3832.10525 83972372 nosZ Nitrogen Denitrification uncultured alpha proteobacterium 3997.56405 113724267 nhh Organic Remediation Aromatics Nitoaromatics Sinorhizobium medicae WSM419 4398.29995 8707.57725 113528451 chnB Organic Remediation Other Hydrocarbons Ralstonia eutropha H16 6774.0288 6979.37183333 5023.44105 9958.06805 5316.56895 55980675 CopA Metal Resistance Copper Thermus thermophilus HB8 5808.71223333 89512974 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 13452.19576667 13103.297 8084.31545 11619.88673333 158320060 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs 5900.0591 27776.87185 18013.55045 2130622 norB Nitrogen Denitrification Rhodobacter sphaeroides 3984.33115 145221861 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium gilvum PYR-GCK 6810.4648 7657.9725 21322770 gyrB other category Phylogenetic marker Corynebacterium glutamicum ATCC 13032 3385.31655 8388.982 10567335 catB Organic Remediation Aromatics BTEX and related aromatics Agrobacterium rhizogenes 5886.63035 29465996 norB Nitrogen Denitrification uncultured bacterium 4739.45165 13141.71655 126629956 benAB Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter sp. ELB17 2518.00935 114737767 silP Metal Resistance Silver Hyphomonas neptunium ATCC 15444 4160.47296667 71558729 TerC Metal Resistance Tellurium Pseudomonas syringae pv. phaseolicola 1448A 3026.10315 15231.2403 10346.5434 83414995 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured Termitomyces 4892.10345 25621.10555 84377272 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio splendidus 12B01 25585.01895 119949175 czcD Metal Resistance Cadmium,Cobalt,Zinc Arthrobacter aurescens TC1 22696.34695 6769.36656667 126236577 phdJ Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 34921.06255 14004.1386 26209.59763333 19915187 merP Metal Resistance Mercury Methanosarcina acetivorans C2A 14426.21805 78222312 cytochrome Energy process Energy process Geobacter metallireducens GS-15 11841.6463 4253.4763 91692955 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 62816.48625 24705.65723333 121610333 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 19549.26695 17370.4061 20499.5869 149805632 ChrA Metal Resistance Chromium Moritella sp. PE36 14269.8571 22678.4854 113951416 czcD Metal Resistance Cadmium,Cobalt,Zinc Shewanella baltica OS195 10699.8891 29830060 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces avermitilis MA-4680 31177.9032 13374.53605 12565.79353333 121605375 phdG Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 8546.64573333 14124.8674 17515.9038 66864085 exaA Organic Remediation Chlorinated solvents Pseudomonas putida 14143.018 144944211 hydrogenase Energy process Energy process Geobacter bemidjiensis Bem 12882.6228 5348.6653 84498092 pcc Carbon cycling Carbon fixation Janibacter sp. HTCC2649 42064.16466667 8682.7507 25183.60583333 1905991 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus globerulus 61580.90375 21911.8277 67008218 cmuA Organic Remediation Chlorinated solvents Rhodobacteraceae bacterium 179 48441.7671 43106.72185 37838.55386667 57335429 endochitinase Carbon cycling Carbon degradataion Chitin Bacillus licheniformis 19733.60495 10575.861 18876.08556667 85109751 pheA Organic Remediation Aromatics Other aromatics Neurospora crassa OR74A 7153.2393 22778394 alkH Organic Remediation Other Hydrocarbons Oceanobacillus iheyensis HTE831 19714.959 19177.39415 118053279 chnB Organic Remediation Other Hydrocarbons Comamonas testosteroni KF-1 8553.83055 90954571 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8658.5497 145217785 alkB Organic Remediation Other Hydrocarbons Mycobacterium gilvum PYR-GCK 10686.5951 91700878 dehH109 Organic Remediation Chlorinated solvents Polaromonas sp. JS666 9912.82425 10836.9111 12251.176 27380715 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 9513.4813 118666005 ChrA Metal Resistance Chromium Delftia acidovorans SPH-1 8653.41685 10771.55715 7649.8556 126732115 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 26552.80376667 7326.98055 11647.77895 8928.1993 14535.49265 15851.92193333 6644320 gyrB other category Phylogenetic marker Aeromonas hydrophila 26380.16045 88083778 tfdA Organic Remediation Aromatics Chlorinated aromatics uncultured bacterium 21929.6505 22883.30583333 35426.00276667 77977649 ppx Phosphorus Phosphorus utilization Yersinia intermedia ATCC 29909 17162.6016 7812.46706667 5987.44805 144905877 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 22836.26715 19301.24405 43814.4339 114544719 phtA Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 41258.9839 21890.71825 110824271 pcpE Organic Remediation Herbicides related compound Rhodococcus sp. RHA1 29371.9277 22176.90893333 17053.82455 7827.67406667 77378551 nirS Nitrogen Denitrification uncultured bacterium 13069.37005 17646.60026667 30237.37486667 5443.38805 57230956 adpB Organic Remediation Pesticides related compound Sulfolobus solfataricus 14749.97655 7190.0557 4059.3874 68135517 nifH Nitrogen Nitrogen fixation uncultured bacterium 26069.40495 116253795 MSAD Organic Remediation Others Rhizobium leguminosarum bv. viciae 3841 8104.94265 15864.5689 126705675 gyrB other category Phylogenetic marker Rhodobacterales bacterium HTCC2150 10069.2549 6214.6446 109452488 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 17895.96465 7355.6893 32838.95673333 7439.65296667 8054.079 90408966 TehB Metal Resistance Tellurium Psychromonas sp. CNPT3 16953.6173 26029.29395 114227200 dsrA Sulphur sulfite reductase Alkalilimnicola ehrlichei MLHE-1 37941.24845 40911.204 26605.53235 99083383 nifH Nitrogen Nitrogen fixation uncultured bacterium 15384.19213333 20295.38326667 77378477 nirS Nitrogen Denitrification uncultured bacterium 10634.50805 33391357 nosZ Nitrogen Denitrification uncultured bacterium 12219.48435 8261.82575 15022439 exaA Organic Remediation Chlorinated solvents Pseudogluconobacter saccharoketogenes 9238.30706667 6785.20435 118717115 nifH Nitrogen Nitrogen fixation Burkholderia multivorans ATCC 17616 10306.68433333 7412.26555 9228.53883333 12553.23693333 6624.2647 13898437 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium 36637.31435 52445.60725 42004.753 4894598 xylanase Carbon cycling Carbon degradataion Hemicellulose Streptomyces avermitilis 47967.2209 18582.6601 25852.7591 52003580 Al Metal Resistance Aluminum Bacillus licheniformis ATCC 14580 9820.1397 12649.8142 126708680 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 23524.3681 14399.075 14813.3439 14273642 gyrB other category Phylogenetic marker Mycobacterium malmoense 8960.02855 10485.22615 139478509 mer Metal Resistance Mercury uncultured soil bacterium 22821.13235 10095.6714 16741.249 119448927 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2143 15934.95425 8113.12395 7890.54215 49333365 exoglucanase Carbon cycling Carbon degradataion Cellulose Volvariella volvacea 46701.97356667 7704.9641 56380062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Geobacillus kaustophilus HTA426 25151.2437 10545.8476 20521.31083333 6484.04866667 145576501 linB Organic Remediation Pesticides related compound Pseudomonas mendocina ymp 17756.8044 8108.20875 24983.42896667 85720869 narG Nitrogen Denitrification Enterobacter cloacae 23676.10105 60326841 tphB Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni 20685.89936667 6737.40935 9252.7432 8840.58795 90954549 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 37979.8635 18757.42035 38197.79 83592134 nifH Nitrogen Nitrogen fixation Rhodospirillum rubrum ATCC 11170 24625.74266667 23812.30093333 76577376 nirS Nitrogen Denitrification uncultured bacterium 18847.0193 7463.46205 11070.69963333 151579397 czcA Metal Resistance Cadmium,Cobalt,Zinc Ralstonia pickettii 12D 10602.98145 9048.26066667 147919060 alkK Organic Remediation Others uncultured methanogenic archaeon RC-I 13531.28555 15014.0706 10918.2086 71158692 alkB Organic Remediation Other Hydrocarbons Nocardioides sp. JS614 17116.35735 11513.0323 18109.29316667 27125547 nirK Nitrogen Denitrification uncultured bacterium 8098.99165 25990808 dsrA Sulphur sulfite reductase uncultured bacterium 27107.63135 18728.9684 19322.2104 2983678 dmsA Organic Remediation Others Aquifex aeolicus VF5 8973.3323 19515.03965 8868.41826667 3590.7701 58337968 amyX Carbon cycling Carbon degradataion Starch Lactobacillus acidophilus NCFM 19183.27055 7516.9663 17231274 CopA Metal Resistance Copper Nostoc sp. PCC 7120 16137.24835 8515799 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 14258.0451 22649.87175 16222.5648 4364.18155 126729544 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 59968.96475 40238.77543333 51503.49793333 116204491 pheA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 15425.84426667 10299.83135 31360.70226667 86143553 ChnA Organic Remediation Other Hydrocarbons Flavobacterium sp. MED217 15617.1741 16164.5361 11739.61703333 85707335 tftH Organic Remediation Aromatics Chlorinated aromatics Roseovarius sp. 217 10228.4255 10824.54286667 1177847 amyA Carbon cycling Carbon degradataion Starch Pseudomonas sp. KFCC10818 21067.23835 14338.8989 41168.93953333 27350588 pcaG Organic Remediation Aromatics Other aromatics Bradyrhizobium japonicum USDA 110 21265.19295 19618.43473333 7519.4582 57868974 gyrB other category Phylogenetic marker Candidatus Regiella insecticola 16669.21035 7835.3537 10591.73833333 5897.13646667 115371547 phenol_oxidase Carbon cycling Carbon degradataion Lignin Coprinopsis cinerea okayama7#130 8314.9009 6907.4283 119957390 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 8108.55255 126710389 bclA Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 15566.39425 10525.60745 22262.49833333 66964859 amyA Carbon cycling Carbon degradataion Starch Arthrobacter sp. FB24 17672.1395 13831.31535 19354.1855 3917.8919 5920.59275 77360337 alkK Organic Remediation Others Pseudoalteromonas haloplanktis TAC125 35225.38615 20859.68985 21734.89743333 89901596 ChrA Metal Resistance Chromium Rhodoferax ferrireducens T118 13623.6042 16755.95183333 33083.10376667 88864194 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 13908.3776 10519.33775 10700.801 95111098 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas 13489.98815 9610.51113333 77978604 phn Organic Remediation Herbicides related compound Yersinia intermedia ATCC 29909 13855.27696667 27378057 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 13298.61235 158331912 phn Organic Remediation Herbicides related compound Azorhizobium caulinodans ORS 571 12745.51275 4138.31225 110624483 gyrB other category Phylogenetic marker Shewanella affinis 8676.45045 5166.9593 157408057 amyA Carbon cycling Carbon degradataion Starch Methylobacterium populi BJ001 36139.91845 13355.4953 14215.40223333 32476816 nitro Organic Remediation Others Rhodopirellula baltica SH 1 17443.72605 14310.2784 23141.63416667 115285885 Arylest Organic Remediation Aromatics Other aromatics Burkholderia cepacia AMMD 25429.6745 23629.87795 19824.63823333 152144922 CorC Metal Resistance Cobalt Beggiatoa sp. SS 27087.8197 9036.413 114315506 vanA Carbon cycling Carbon degradataion Others Granulibacter bethesdensis CGDNIH1 24221.41915 8752.2254 11688.3482 27379061 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 18673.74355 88919815 phn Organic Remediation Herbicides related compound Acidiphilium cryptum JF-5 43526.61525 23127513 nifH Nitrogen Nitrogen fixation Nostoc punctiforme PCC 73102 25151.20795 15352.60845 109452473 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11394.4591 83757114 gyrB other category Phylogenetic marker Salinibacter ruber DSM 13855 11519.13785 7024.40256667 21322687 mer Metal Resistance Mercury Pseudomonas fulva 12160.3573 23594.9671 4468124 dehH109 Organic Remediation Chlorinated solvents Bradyrhizobium sp. 15075.2424 12044.7217 91799285 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 18790.7054 69198.74265 5593.7197 66801853 narG Nitrogen Denitrification unidentified bacterium 13292.6991 11200.4119 12553.013 50084026 ChrA Metal Resistance Chromium Acinetobacter sp. ADP1 20579.97 10078.75206667 73539816 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 17775.60003333 157679030 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11827.19455 14254.8896 85688776 pcc Carbon cycling Carbon fixation Erythrobacter sp. NAP1 9689.91705 11424.6284 6888.58145 2267076 gyrB other category Phylogenetic marker Pseudoalteromonas tetraodonis 6926.7388 6550.6114 94310300 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia metallidurans CH34 19302.1833 7805.0969 83814744 linB Organic Remediation Pesticides related compound Salinibacter ruber DSM 13855 12422.50436667 499714 xylanase Carbon cycling Carbon degradataion Hemicellulose Geobacillus stearothermophilus 8486.0888 109701514 pcc Carbon cycling Carbon fixation Pseudoalteromonas atlantica T6c 7230.7441 11209.93715 106886588 endochitinase Carbon cycling Carbon degradataion Chitin Clostridium phytofermentans ISDg 13749.1547 13167.3831 78361036 czcA Metal Resistance Cadmium,Cobalt,Zinc Shewanella sp. PV-4 17601.86086667 73749203 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 11824.49155 154155441 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 12197.92235 15076855 dsrA Sulphur sulfite reductase Desulfosporosinus orientis 53324.04255 2648975 rubisco Carbon cycling Carbon fixation Archaeoglobus fulgidus DSM 4304 18120.9005 10785.33263333 1903327 pimF Organic Remediation Aromatics Aromatic carboxylic acid Thermoanaerobacterium thermosaccharolyticum 35430.4667 14296.78485 11582.0641 8886078 endochitinase Carbon cycling Carbon degradataion Chitin Ajellomyces dermatitidis 11686.23525 42475478 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous 12256.85943333 62512317 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 11002.11755 9777.65503333 118687552 mdlD Organic Remediation Aromatics Other aromatics Marinomonas sp. MWYL1 46465.52393333 15504.39225 26778.02166667 15473.8239 7807.40793333 91720051 nagI Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 11143.5846 15435.8996 1835226 glucoamylase Carbon cycling Carbon degradataion Starch Saccharomycopsis fibuligera 11079.51505 15928.79196667 78514625 Catechol Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 47188.28493333 59228.58755 33592.72683333 7748.37115 75702578 dehH Organic Remediation Chlorinated solvents Anabaena variabilis ATCC 29413 19534.97445 25372.1185 23825.32113333 83816541 nosZ Nitrogen Denitrification Salinibacter ruber DSM 13855 13368.59496667 17794.7971 8448.5214 6600.12005 113729901 xylanase Carbon cycling Carbon degradataion Hemicellulose Caulobacter sp. K31 13814.0621 27977.95113333 21725.6833 115516724 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris BisA53 19466.47845 27928.32933333 9866.68895 144945410 ChrA Metal Resistance Chromium Geobacter bemidjiensis Bem 31446.3444 13662.3394 116634797 narG Nitrogen Denitrification uncultured bacterium 9758.5075 25990955 exoglucanase Carbon cycling Carbon degradataion Cellulose Piromyces sp. E2 59238.51385 1850786 nhh Organic Remediation Aromatics Nitoaromatics Rhodococcus rhodochrous 16857.15466667 7870.3154 22523.41183333 126635907 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 14754.1534 118762413 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 139881.5071 129418.16226667 62392.2862 42432.11086667 96858.26436667 68372.05216667 119774539 cellobiase Carbon cycling Carbon degradataion Cellulose Shewanella amazonensis SB2B 40928.86456667 11426.1234 23518.1215 121495552 narG Nitrogen Denitrification uncultured bacterium 8987.4383 5861.63766667 90954561 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 25942.9671 22149.5585 22664.1228 7861.3401 89900713 CopA Metal Resistance Copper Rhodoferax ferrireducens T118 26294.02506667 124004267 czcA Metal Resistance Cadmium,Cobalt,Zinc Microscilla marina ATCC 23134 21955.53735 8405.66626667 12724614 czcD Metal Resistance Cadmium,Cobalt,Zinc Lactococcus lactis subsp. lactis Il1403 10744.31605 156740976 pcc Carbon cycling Carbon fixation Roseiflexus castenholzii DSM 13941 11441.00265 10816.8123 89898785 gyrB other category Phylogenetic marker Chlamydophila felis Fe/C-56 17020.69025 7498.68195 133914530 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 18178.8117 89513040 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 20454.0061 144905782 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 27786.71215 24800.14956667 625180 xylA Carbon cycling Carbon degradataion Hemicellulose 10395.46355 14816.7435 3219626 amyA Carbon cycling Carbon degradataion Starch Streptomyces lividans 13540.2973 13425.9016 114189723 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 29030.7227 12186.6523 85824586 ppx Phosphorus Phosphorus utilization Roseobacter sp. MED193 19694.9618 23076.04656667 48374224 tfdA Organic Remediation Aromatics Chlorinated aromatics Fremyella diplosiphon 9169.49505 8696.31055 32287.56663333 85835814 amyA Carbon cycling Carbon degradataion Starch Vibrio sp. MED222 11625.19275 9576.21253333 6827.5202 72121627 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 49878.0291 57433.7672 51673.51766667 71915004 endochitinase Carbon cycling Carbon degradataion Chitin Thermobifida fusca YX 11165.71185 12761.5882 126730283 CopA Metal Resistance Copper Sagittula stellata E-37 28370.41643333 32636.6918 7759.9277 6644.4603 11098.76863333 9125.70206667 81251649 nirS Nitrogen Denitrification uncultured organism 16963.00623333 10615.35205 28372.5648 156838955 cellobiase Carbon cycling Carbon degradataion Cellulose Vanderwaltozyma polyspora DSM 70294 22744.6715 52991.78253333 34557.54516667 37955634 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 12783.8728 7293.62525 9764.90505 94471229 narG Nitrogen Denitrification uncultured bacterium 16102.6927 84713304 pcpE Organic Remediation Herbicides related compound Polaromonas naphthalenivorans CJ2 13898.02256667 13006.9734 9603.28516667 27377845 sox Sulphur Sulphur oxidation Bradyrhizobium japonicum USDA 110 19183.3897 41058919 ChnE Organic Remediation Other Hydrocarbons Brachymonas petroleovorans 25262.35585 14204.03705 28848925 tomA Organic Remediation Aromatics BTEX and related aromatics Pseudomonas stutzeri 20267.24915 21805.87433333 13296.4424 56809467 nifH Nitrogen Nitrogen fixation uncultured bacterium 10773.04145 9207.9364 58422515 nosZ Nitrogen Denitrification uncultured bacterium 7323.836 78777421 ZntA Metal Resistance Zinc Thiomicrospira denitrificans ATCC 33889 32751.4069 14574.16615 118667843 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 28726.0819 91783541 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 23077.5613 154274530 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Ajellomyces capsulatus NAm1 15967.13095 14322.8818 56962489 narG Nitrogen Denitrification Bacillus clausii KSM-K16 11629.59905 154250988 silC Metal Resistance Silver Parvibaculum lavamentivorans DS-1 11839.31885 77019723 ArsC Metal Resistance Arsenic Rhodococcus erythropolis PR4 7012.93855 6077.313 119460795 Arylest Organic Remediation Aromatics Other aromatics marine gamma proteobacterium HTCC2080 15128.94535 9068.8142 118593752 pheA Organic Remediation Aromatics Other aromatics Stappia aggregata IAM 12614 12051.1876 12436.99405 10804.19403333 21467103 ZntA Metal Resistance Zinc Rhizobium etli 17702.92 19364.59335 68056190 gyrB other category Phylogenetic marker Exiguobacterium sibiricum 255-15 14261.19845 16587.3118 72388561 gyrB other category Phylogenetic marker Psychrobacter pacificensis 15439.3974 9249.85965 6782.53415 119863435 ArsC Metal Resistance Arsenic Psychromonas ingrahamii 37 26737.9525 47716848 mcrA Carbon cycling Methane Methane production uncultured archaeon 11319.95405 7192.20795 88813119 CopA Metal Resistance Copper Nitrococcus mobilis Nb-231 12710.3168 3157502 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 25567.1334 17753.3332 20841.6498 304359 cellobiase Carbon cycling Carbon degradataion Cellulose 20428.39155 25383.2628 20203.8931 145595773 endochitinase Carbon cycling Carbon degradataion Chitin Salinispora tropica CNB-440 8435.92885 9929.4382 115284506 mauAB Organic Remediation Herbicides related compound Burkholderia cepacia AMMD 36558.78695 14852.78225 12960.7869 116634793 narG Nitrogen Denitrification uncultured bacterium 32706.35265 14676.1264 11016.91633333 83575562 alkK Organic Remediation Others Rhodospirillum rubrum ATCC 11170 11346.8235 19082.41706667 71020355 endochitinase Carbon cycling Carbon degradataion Chitin Ustilago maydis 521 12783.4049 54298177 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Legionella pneumophila str. Paris 16010.8081 18950.51206667 78696804 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 9744.1795 17553.06876667 30472.98295 37362632 ZitB Metal Resistance Zinc Saccharomyces cerevisiae 12887.99295 6151.56935 139002668 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 11192.21835 71368759 xylA Carbon cycling Carbon degradataion Hemicellulose Nocardioides sp. JS614 10233.85455 15039.6579 146410555 czcA Metal Resistance Cadmium,Cobalt,Zinc Bradyrhizobium sp. BTAi1 11705.23605 10522.89145 115386862 glucoamylase Carbon cycling Carbon degradataion Starch Aspergillus terreus NIH2624 48487.60235 13706.83775 45386223 narG Nitrogen Denitrification unidentified bacterium 18295.97205 21615.99065 9247.6205 55978094 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11233.66516667 21217701 rubisco Carbon cycling Carbon fixation uncultured bacterium 11348.0057 6866.32205 119486793 nifH Nitrogen Nitrogen fixation Lyngbya sp. PCC 8106 21408.8367 28105.0963 15787972 dsrA Sulphur sulfite reductase Desulfobulbus sp. DSM 2058 21491.68755 46367.6296 125974082 nifH Nitrogen Nitrogen fixation Clostridium thermocellum ATCC 27405 12209.9119 154352117 pcc Carbon cycling Carbon fixation Bacillus amyloliquefaciens FZB42 13975.48485 17550.0461 22439.62443333 148503424 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 97597.53226667 101345.58783333 31606.81653333 34085.32363333 63603.73383333 52568.4659 127511457 cytochrome Energy process Energy process Shewanella loihica PV-4 56794.46785 7193.2802 29074.60673333 46307932 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 14624.25415 11889.698 92394288 trzN Organic Remediation Herbicides related compound Psychrobacter cryohalolentis K5 11784.70515 12691.68005 149232468 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pedobacter sp. BAL39 20230.3064 8236.87985 7637.12096667 15616245 xylanase Carbon cycling Carbon degradataion Hemicellulose Bacillus halodurans C-125 20263.661 20991.79315 3333.4227 2635477 amyX Carbon cycling Carbon degradataion Starch Bacillus subtilis subsp. subtilis str. 168 13387.7514 11107.7456 73659733 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 23440.6346 12836.31136667 14023.887325 27529599 dehH109 Organic Remediation Chlorinated solvents uncultured bacterium 95418.5147 97742.29426667 22011.784 25956.43946667 73695.7646 62026.37586667 145206312 nifH Nitrogen Nitrogen fixation Prosthecochloris vibrioformis DSM 265 16634.25055 7379.2164 72122389 ChrA Metal Resistance Chromium Ralstonia eutropha JMP134 16602.8301 8246.33165 117164621 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces ambofaciens ATCC 23877 15452.9101 6946.91213333 6872.934 139003215 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 13581.84535 13251.75985 10196.90203333 152982939 SilA Metal Resistance Silver Janthinobacterium sp. Marseille 18069.3624 18445.6725 7287.38645 72121247 mauAB Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 6619.98365 110831557 bbs Organic Remediation Aromatics BTEX and related aromatics Verminephrobacter eiseniae EF01-2 14983.4424 9565.80755 118003223 ArsC Metal Resistance Arsenic Comamonas testosteroni KF-1 16429.19455 6529.56525 12540.7598 117582119 endochitinase Carbon cycling Carbon degradataion Chitin Chaetomium cupreum 13337.62885 16979.98545 21825.3115 34105459 CorC Metal Resistance Cobalt Chromobacterium violaceum ATCC 12472 12011.14313333 13443.28243333 91799403 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 9731.48245 4788.4998 84510386 ureC Nitrogen Ammonification Loktanella vestfoldensis SKA53 28945.23275 5716.0023 119955804 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 8244.17625 6587.4142 35210564 ArsC Metal Resistance Arsenic Gloeobacter violaceus PCC 7421 14140.7763 121555369 tfdA Organic Remediation Aromatics Chlorinated aromatics Verminephrobacter eiseniae EF01-2 11462.0949 123200065 alkK Organic Remediation Others Prochlorococcus marinus str. MIT 9515 29405.7643 94984767 amyA Carbon cycling Carbon degradataion Starch Deinococcus geothermalis DSM 11300 30674.60385 8769.8035 18445.84763333 118435092 phn Organic Remediation Herbicides related compound Stappia aggregata IAM 12614 23845.0753 15187.99786667 88799843 pheA Organic Remediation Aromatics Other aromatics Reinekea sp. MED297 11168.6079 12065.1715 32478358 nosZ Nitrogen Denitrification uncultured soil bacterium 10708.97465 7999.30975 19613.6807 119698451 dsrA Sulphur sulfite reductase uncultured bacterium 9530.44 62003585 narG Nitrogen Denitrification uncultured bacterium 14096.8708 7219.56303333 157679455 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 30811.99825 26468.33186667 29466024 norB Nitrogen Denitrification uncultured bacterium 12541.83416667 145242996 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 16977.2224 11813.19995 26425.07673333 1255460 nifH Nitrogen Nitrogen fixation unidentified bacterium 10392.37936667 83955348 atzB Organic Remediation Herbicides related compound Sulfitobacter sp. NAS-14.1 25977.3026 113942145 endochitinase Carbon cycling Carbon degradataion Chitin Herpetosiphon aurantiacus ATCC 23779 13312.08103333 10561.21106667 121716531 pheA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 18130.74625 118705674 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas wittichii RW1 27869.53666667 11711.67575 115370099 czcA Metal Resistance Cadmium,Cobalt,Zinc Stigmatella aurantiaca DW4/3-1 10670.0676 114339765 pimF Organic Remediation Aromatics Aromatic carboxylic acid Maricaulis maris MCS10 14653.30555 529424 ureC Nitrogen Ammonification 12749.2614 126436777 phdG Organic Remediation Aromatics Polycyclic aromatics Mycobacterium sp. JLS 12353.82695 46371989 isopullulanase Carbon cycling Carbon degradataion Starch Lipomyces starkeyi 17097.5689 7708.3547 112774548 xylF Organic Remediation Aromatics BTEX and related aromatics Delftia sp. AN3 6777.828 303497 exoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus kawachii 35742.73615 17784.41706667 73540712 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 8900.17355 25912.4827 21162.08875 3605.46265 90336690 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aurantimonas sp. SI85-9A1 13744.5728 51316.90335 6104.7512 119497609 tfdA Organic Remediation Aromatics Chlorinated aromatics Neosartorya fischeri NRRL 181 14171.2811 50071.7274 37086.40045 86156836 pimF Organic Remediation Aromatics Aromatic carboxylic acid Anaeromyxobacter dehalogenans 2CP-C 17411.5749 10727.44355 6262.04215 89512338 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 25387.54755 19183.6561 41395431 ArsC Metal Resistance Arsenic Mycobacterium avium subsp. paratuberculosis K-10 12324.4052 16075.8069 88778859 ChrA Metal Resistance Chromium Reinekea sp. MED297 23218.83595 24283.8505 150009934 ChrA Metal Resistance Chromium Parabacteroides distasonis ATCC 8503 42321.62175 120594177 ChrA Metal Resistance Chromium Polaromonas naphthalenivorans CJ2 15101.07885 17960.9166 7085.05605 157377310 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 19209.8771 15624.9335 83839281 czcA Metal Resistance Cadmium,Cobalt,Zinc Sulfitobacter sp. NAS-14.1 13278.86145 13690.25565 74136896 phdJ Organic Remediation Aromatics Polycyclic aromatics Polaromonas naphthalenivorans CJ2 8454.9404 41510.32355 15443.33906667 46307936 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 32952.74155 55599.6338 24216893 gyrB other category Phylogenetic marker Leptospira interrogans serovar Lai str. 56601 34193.33295 30178.57 67854934 TerZ Metal Resistance Tellurium Crocosphaera watsonii WH 8501 17810.32395 14784.3955 149754282 ara Carbon cycling Carbon degradataion Hemicellulose Dorea longicatena DSM 13814 22726.41335 14245.86853333 90436064 ara Carbon cycling Carbon degradataion Hemicellulose Flavobacterium johnsoniae UW101 33690.6648 23457.4264 33652.52045 33391389 nosZ Nitrogen Denitrification uncultured bacterium 20401.48023333 14073.7537 15042.37736667 7827.598 169264 lip Carbon cycling Carbon degradataion Lignin Phanerochaete chrysosporium 21688.15215 19716.9641 18432.83223333 89897567 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 7698.58055 8835.8375 6882.17653333 34500161 gyrB other category Phylogenetic marker Pantoea dispersa 19931.4114 21747.01295 11669.15025 146410060 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 11567.15175 6607.3666 6440.5771 116094270 gyrB other category Phylogenetic marker Lactobacillus gasseri ATCC 33323 11062.2194 152144700 narG Nitrogen Denitrification Beggiatoa sp. SS 10622.4964 7049.76575 110820056 ZntA Metal Resistance Zinc Rhodococcus sp. RHA1 8199.3962 149142712 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. TM1035 32387.96775 30759.1922 35528.19533333 115433468 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 26774.75623333 18709.13985 25515.9681 4587.3573 85717264 BADH Organic Remediation Aromatics Other aromatics Nitrobacter sp. Nb-311A 12412.8017 28381.92125 34498949 norB Nitrogen Denitrification Chromobacterium violaceum ATCC 12472 17125.33183333 13593.49265 116694374 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia eutropha H16 6663.28615 120437721 nbaC Organic Remediation Aromatics Nitoaromatics Gramella forsetii KT0803 37919.42365 37946.57645 28807.32723333 7461.28385 49646067 nmoA Organic Remediation Aromatics Nitoaromatics Yarrowia lipolytica CLIB122 13723.53335 84686221 atzB Organic Remediation Herbicides related compound Rhodobacterales bacterium HTCC2654 16815.2534 12617.9465 94471127 narG Nitrogen Denitrification uncultured bacterium 13257.3062 10039.28705 74316920 czcA Metal Resistance Cadmium,Cobalt,Zinc Thiobacillus denitrificans ATCC 25259 19549.1535 21255.97116667 157374669 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 14432.99216667 19297.19316667 50084184 vanA Carbon cycling Carbon degradataion Others Acinetobacter sp. ADP1 12509.14155 7433.4683 67516965 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 22639.12185 14705.4546 118424532 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 29647.66215 11578.41435 90441265 ArsC Metal Resistance Arsenic Vibrio angustum S14 7459.25735 4680.65905 28851803 AmiE Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 29842.64103333 25914.33623333 13286.2167 912494 exoglucanase Carbon cycling Carbon degradataion Cellulose 11887.1165 119190413 cellobiase Carbon cycling Carbon degradataion Cellulose Coccidioides immitis RS 19432.6568 10628.62635 31337508 rd Organic Remediation Chlorinated solvents Dehalobacter restrictus 11624.03515 19909553 gyrB other category Phylogenetic marker Plectonema boryanum 28523.0104 28816.4733 23362.07555 27367597 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio vulnificus CMCP6 9990.1342 60326780 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 16199.1345 70672977 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 18844.4828 9382.9315 115251169 ZntA Metal Resistance Zinc Clostridium difficile 630 25138.09785 15827.78086667 113889821 endochitinase Carbon cycling Carbon degradataion Chitin Shewanella sp. MR-7 12145.5758 10686.64376667 88702838 nifH Nitrogen Nitrogen fixation Mastigocladus laminosus 10339.2075 12899.69675 63257262 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. syringae B728a 8472.5052 1679595 exoglucanase Carbon cycling Carbon degradataion Cellulose Agaricus bisporus 13555.36175 19421899 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense 11325.9415 8316.2071 11255.7754 47600976 nifH Nitrogen Nitrogen fixation uncultured bacterium 12503.16915 157377311 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 19175.0537 41071.22365 7085.49 134097624 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 26706.64945 9427.54375 158338143 atzA Organic Remediation Herbicides related compound Acaryochloris marina MBIC11017 21299.04035 26553908 cellobiase Carbon cycling Carbon degradataion Cellulose Mycoplasma penetrans HF-2 28047.61695 8090.35695 26397.3802 99083099 nifH Nitrogen Nitrogen fixation uncultured bacterium 23918.50735 6623.76465 29608437 linB Organic Remediation Pesticides related compound Streptomyces avermitilis MA-4680 11452.85915 10019.91805 10427.8145 104782200 benD Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas entomophila L48 11096.5045 10900.30325 14489.0232 109660059 ureC Nitrogen Ammonification unidentified bacterial contaminant 23148.9488 4032.0658 6549.0232 41583400 FTHFS Carbon cycling Acetogenesis Lactobacillus johnsonii NCC 533 53830.0418 12318.18185 116222446 endochitinase Carbon cycling Carbon degradataion Chitin Solibacter usitatus Ellin6076 33939.12815 15407.6191 91693028 mdlD Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 16058.6077 12892.17745 84369762 xylanase Carbon cycling Carbon degradataion Hemicellulose Xanthomonas oryzae pv. oryzae MAFF 311018 9797.2683 11809.125 73534137 nifH Nitrogen Nitrogen fixation uncultured bacterium 16285.80855 7797.3271 88863448 catB Organic Remediation Aromatics BTEX and related aromatics Jannaschia sp. CCS1 9770.3731 150006534 ara Carbon cycling Carbon degradataion Hemicellulose Bacteroides vulgatus ATCC 8482 51672.97965 16401.28956667 34592191 aclB Carbon cycling Carbon fixation uncultured episymbiont of Alvinella pompejana 13055.3019 6202.55915 91793359 glucoamylase Carbon cycling Carbon degradataion Starch Shewanella denitrificans OS217 18938.00405 16959.87215 83859634 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicaulis alexandrii HTCC2633 21254.09325 12652.93135 126718418 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 13567.28215 8918.5347 12389.7081 123228384 phenol_oxidase Carbon cycling Carbon degradataion Lignin uncultured fungus 54986.8388 23078.75525 7847.86855 6165.63345 118706452 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 11985.9492 13102.50306667 118667595 ArsC Metal Resistance Arsenic Delftia acidovorans SPH-1 17792.4166 19396.80756667 72388563 gyrB other category Phylogenetic marker Psychrobacter proteolyticus 19415.5031 18509.9716 21715.5722 116013208 nirS Nitrogen Denitrification uncultured bacterium 12967.80003333 25112.57393333 55378015 dmsA Organic Remediation Others Haloarcula marismortui ATCC 43049 44598.2281 15761.51345 26268.93086667 118728485 Al Metal Resistance Aluminum Clostridium cellulolyticum H10 29867.12535 11248.529 23684.08696667 110647317 ZntA Metal Resistance Zinc Alcanivorax borkumensis SK2 9104.57945 119483160 czcD Metal Resistance Cadmium,Cobalt,Zinc Neosartorya fischeri NRRL 181 14038.001 12164.7228 10398.05263333 146297463 nifH Nitrogen Nitrogen fixation Caldicellulosiruptor saccharolyticus DSM 8903 27218.0663 8818.7827 155964459 nasA Nitrogen Assimilatory N reduction uncultured marine bacterium 31708.6687 3445533 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. E2 18138.1316 32306887 vdh Carbon cycling Carbon degradataion Others Acinetobacter sp. ADP1 15523.89675 6889.082 110596880 rubisco Carbon cycling Carbon fixation Chlorobium ferrooxidans DSM 13031 10793.4776 10751.5643 77382551 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas fluorescens PfO-1 14203.91135 15674.33563333 6421.8992 8821.59215 157679469 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11744.3416 26407.23495 22258.28195 110824706 alkK Organic Remediation Others Rhodococcus sp. RHA1 19805.39436667 114321026 ZntA Metal Resistance Zinc Alkalilimnicola ehrlichei MLHE-1 22275.42045 9963.91925 20855.26513333 6978.8291 57020642 nrfA Nitrogen Dissimilatory N reduction Campylobacter coli RM2228 9077.02015 151208 endoglucanase Carbon cycling Carbon degradataion Cellulose Ralstonia solanacearum 26973.93025 18323.54445 89046482 amyA Carbon cycling Carbon degradataion Starch Oceanicola granulosus HTCC2516 56019.71425 40136.96645 27586.4322 7622.9512 119714242 merB Metal Resistance Mercury Nocardioides sp. JS614 14878.59455 9406.07766667 62512329 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 13643.47705 17182.30706667 116804592 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8218.76165 144899381 sox Sulphur Sulphur oxidation Magnetospirillum gryphiswaldense MSR-1 8585.1677 6032.0498 8198.74093333 53688476 ZntA Metal Resistance Zinc Nostoc punctiforme PCC 73102 16815.50456667 25521.2771 83317086 nirK Nitrogen Denitrification uncultured bacterium 9303.2542 7156.07786667 32447078 BDO Organic Remediation Aromatics BTEX and related aromatics Rhodopirellula baltica SH 1 9319.545 7050.22495 88793605 ppx Phosphorus Phosphorus utilization Alteromonas macleodii 'Deep ecotype' 9941.64395 12887.8803 91699761 pimF Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 21358.0442 11991219 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Cochliobolus carbonum 10563.80815 17247.874 29203.43626667 78043399 alkK Organic Remediation Others Carboxydothermus hydrogenoformans Z-2901 9031.446 152023095 CadA Metal Resistance Cadmium Bacillus cereus subsp. cytotoxis NVH 391-98 15554.2069 9137.6523 5697.5243 41324514 alkK Organic Remediation Others Corynebacterium glutamicum ATCC 13032 15229.1116 24608.5574 20548.8243 116698740 czcA Metal Resistance Cadmium,Cobalt,Zinc Syntrophobacter fumaroxidans MPOB 10556.274 14226.3379 11532.14206667 146302031 czcA Metal Resistance Cadmium,Cobalt,Zinc Flavobacterium johnsoniae UW101 14281.3275 16373.9187 17235.39716667 146302282 endochitinase Carbon cycling Carbon degradataion Chitin Flavobacterium johnsoniae UW101 10565.7202 12393.78295 78359103 Arylest Organic Remediation Aromatics Other aromatics Shewanella sp. PV-4 22082.4463 11224.3691 157737058 ureC Nitrogen Ammonification Arcobacter butzleri RM4018 17587.368 121605010 benD Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 17317.6047 19979.5342 6941.15575 90434377 CopA Metal Resistance Copper Flavobacterium johnsoniae UW101 8697.11225 11623.9746 5543.6552 98977951 czcA Metal Resistance Cadmium,Cobalt,Zinc Sphingopyxis alaskensis RB2256 15822.1363 8723.98946667 83772403 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus oryzae 10720.14235 15557.43185 148239979 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Synechococcus sp. WH 7803 19933.1886 19916.73575 29160353 exoglucanase Carbon cycling Carbon degradataion Cellulose Coprinopsis cinerea 10292.9205 119401426 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 10150.9162 71481262 gyrB other category Phylogenetic marker Prosthecochloris vibrioformis DSM 265 44391.96015 10321.64563333 144905705 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 42734.9751 71953.58575 45551.4042 92117399 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrobacter hamburgensis X14 12510.48715 7611.08325 6557.2107 119188019 HcaB Organic Remediation Aromatics Aromatic carboxylic acid Coccidioides immitis RS 24375.0679 13724.882 17826937 pheA Organic Remediation Aromatics Other aromatics Burkholderia kururiensis 12301.8702 14816.61673333 91686250 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 15379.6314 14055.22155 118702832 Catechol Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 99613.84003333 108497.0032 48253.2477 30444.9896 67372.89236667 49283.16286667 68549269 CopA Metal Resistance Copper Pelodictyon phaeoclathratiforme BU-1 24093.77135 14713.94903333 20604.0927 9325.5716 7058.50945 149941661 dsrB Sulphur sulfite reductase Archaeoglobus veneficus 15602.55025 14209510 catB Organic Remediation Aromatics BTEX and related aromatics Burkholderia sp. NK8 9214.6845 7599.1894 116013378 nirS Nitrogen Denitrification uncultured bacterium 10387.9563 7058.9144 110818401 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 10652.18475 46736.51135 31437.23905 70989153 Catechol Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 14762.8723 10324.8574 87281247 nirS Nitrogen Denitrification uncultured bacterium 17403.43965 83017273 gyrB other category Phylogenetic marker Microbulbifer sp. MBIC08258 13533.34975 12021.591 20701.57423333 88196205 ureC Nitrogen Ammonification Staphylococcus aureus subsp. aureus NCTC 8325 33987.28305 13588.9877 17191.4855 13814425 tmoABE Organic Remediation Aromatics BTEX and related aromatics Sulfolobus solfataricus P2 14390.52305 8355.85025 29293589 gyrB other category Phylogenetic marker Mesoplasma photuris 29796.46335 15434.6207 36069.17766667 110821154 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 15714.5887 10881.8249 7993.77335 73538232 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 12771.3366 6176.6458 52352498 xylF Organic Remediation Aromatics BTEX and related aromatics Comamonas sp. CNB-1 5888.918 121611099 pcc Carbon cycling Carbon fixation Verminephrobacter eiseniae EF01-2 15768.1899 6200.976 156859885 ara Carbon cycling Carbon degradataion Hemicellulose Bacteroides uniformis ATCC 8492 29236.2075 69825.14705 158522020 linB Organic Remediation Pesticides related compound Candidatus Desulfococcus oleovorans Hxd3 20577.96615 16988.19715 116608920 ureC Nitrogen Ammonification Arthrobacter sp. FB24 7524.71385 5934.3246 33640783 xylF Organic Remediation Aromatics BTEX and related aromatics Prochlorococcus marinus str. MIT 9313 13346.61335 115285971 phtA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia ambifaria AMMD 20184.3315 25813.3259 144905951 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 35889.25675 11512.83445 15681.226 487419 endochitinase Carbon cycling Carbon degradataion Chitin 17016.51625 27973.0383 17158746 czcD Metal Resistance Cadmium,Cobalt,Zinc Nostoc sp. PCC 7120 14611.9495 13518.39873333 73535076 nifH Nitrogen Nitrogen fixation uncultured bacterium 52532.91065 39555.8313 73541640 dehH109 Organic Remediation Chlorinated solvents Ralstonia eutropha JMP134 36386.34525 119857776 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 28812.29425 10501.94126667 33218.88326667 7262428 dsrA Sulphur sulfite reductase uncultured sulfate-reducer HMS-24 28570.0439 113868120 pcc Carbon cycling Carbon fixation Ralstonia eutropha H16 9595.18895 99030463 ppk Phosphorus Phosphorus utilization uncultured bacterium 16563.1965 15024354 TerZ Metal Resistance Tellurium Clostridium acetobutylicum ATCC 824 64179.682 7606.92365 43496.7674 17696.24526667 52348315 gyrB other category Phylogenetic marker Bacillus licheniformis ATCC 14580 18402.97755 10604.11225 16139.3141 4529.93625 73539477 czcA Metal Resistance Cadmium,Cobalt,Zinc Ralstonia eutropha JMP134 12276.73506667 18379.6286 25633.53353333 5106.98615 56678520 ChrA Metal Resistance Chromium Silicibacter pomeroyi DSS-3 22054.5296 11934.763 4581.26695 6541.10905 119899535 alkK Organic Remediation Others Azoarcus sp. BH72 10142.47815 118467464 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 9591.04995 157101508 Se Metal Resistance Selenium Campylobacter concisus 13826 13522.4676 13275.89175 146337197 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. ORS278 11700.7047 24185.2886 23759.12153333 11691635 ArsC Metal Resistance Arsenic Pseudomonas putida 6815.95175 156862312 ChrA Metal Resistance Chromium Bacteroides uniformis ATCC 8492 19878.92233333 119718804 cellobiase Carbon cycling Carbon degradataion Cellulose Nocardioides sp. JS614 12016.67165 9236.441 4926.7534 115256236 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 9695.429 33577855 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 19227.5852 15466.94373333 6145.30795 109660077 ureC Nitrogen Ammonification unidentified bacterial contaminant 14828.67145 9902.6248 13261.1999 76667520 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 13056.20865 14606.32155 8615.7928 34017058 mcrA Carbon cycling Methane Methane production Methanocaldococcus infernus 24696.87965 6294.42786667 76057607 nosZ Nitrogen Denitrification uncultured bacterium 17432.94663333 119401629 amyA Carbon cycling Carbon degradataion Starch Aspergillus clavatus NRRL 1 18155.2729 16598.15795 115250428 catB Organic Remediation Aromatics BTEX and related aromatics Clostridium difficile 630 16474.33245 63029769 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 14233.50245 44347.20795 24875.73905 73697390 amoA Nitrogen Nitrification uncultured crenarchaeote 16518.48335 6875.9231 89890058 amyA Carbon cycling Carbon degradataion Starch Flavobacteria bacterium BBFL7 19435.44983333 11171.63265 20505.1848 114334978 czcD Metal Resistance Cadmium,Cobalt,Zinc Shewanella frigidimarina NCIMB 400 8932.2068 5579.70395 119177882 glx Carbon cycling Carbon degradataion Lignin Coccidioides immitis RS 10696.40035 138894023 alkH Organic Remediation Other Hydrocarbons Geobacillus thermodenitrificans NG80-2 7616.66315 21323744 ppx Phosphorus Phosphorus utilization Corynebacterium glutamicum ATCC 13032 13880.7531 36893.35615 12631.29836667 77378679 nirS Nitrogen Denitrification uncultured bacterium 13068.6774 70731217 cbdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas fluorescens Pf-5 7554.3156 83025964 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 20511.8277 3856.20095 86359238 xylA Carbon cycling Carbon degradataion Hemicellulose Rhizobium etli CFN 42 7153.04435 67985836 czcD Metal Resistance Cadmium,Cobalt,Zinc Kineococcus radiotolerans SRS30216 12933.0578 9966.3498 8847.5534 56379980 pcc Carbon cycling Carbon fixation Geobacillus kaustophilus HTA426 41863.6639 56301.9852 62906758 dsrA Sulphur sulfite reductase uncultured prokaryote 13836.5148 24703.67315 23733.6304 28271963 tutFDG Organic Remediation Aromatics BTEX and related aromatics Lactobacillus plantarum WCFS1 19583.3496 60650089 alkK Organic Remediation Others Pseudomonas chlororaphis 8249.7852 6857.23396667 109900185 proO Organic Remediation Aromatics Other aromatics Pseudoalteromonas atlantica T6c 11829.6396 25890.6726 13921.2001 68242692 nifH Nitrogen Nitrogen fixation Pelodictyon phaeoclathratiforme BU-1 8749.19985 4247.5676 71010212 ChrA Metal Resistance Chromium Ustilago maydis 521 9674.21125 10313.89795 16432.65316667 85059831 ZntA Metal Resistance Zinc Sodalis glossinidius str. 'morsitans' 10314.13225 7935.88613333 76058152 nosZ Nitrogen Denitrification uncultured bacterium 17563.6121 68164658 nirS Nitrogen Denitrification uncultured bacterium 15806.79005 6384.3074 20502013 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 13312.27835 12915.2727 116694822 xlnD Organic Remediation Aromatics Other aromatics Ralstonia eutropha H16 12911.72945 8126.6517 20990.42973333 118471854 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium smegmatis str. MC2 155 54134.24235 13500.92825 29897.4286 111147441 vanA Carbon cycling Carbon degradataion Others Frankia alni ACN14a 12277.5439 146401549 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 7629.30085 14008.48433333 26989202 cytochrome Energy process Energy process Pseudomonas putida KT2440 22382.0631 7948.83233333 110833848 pimF Organic Remediation Aromatics Aromatic carboxylic acid Alcanivorax borkumensis SK2 31053.19583333 15343.24726667 9406.14343333 7352.5993 8750.90875 120436609 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Gramella forsetii KT0803 9490.4267 8586.2782 17578.26246667 145215904 CadA Metal Resistance Cadmium Mycobacterium gilvum PYR-GCK 15392.9676 11703.97566667 78127453 glucoamylase Carbon cycling Carbon degradataion Starch Rhizopus oryzae 27564.36965 14100.3586 110224950 gyrB other category Phylogenetic marker Streptococcus anginosus 11883.0592 118424367 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 43408.45965 120406161 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 31122.338 18825.2896 23210.98023333 15787970 dsrB Sulphur sulfite reductase Desulforhabdus amnigena 11605.2942 115422893 silC Metal Resistance Silver Bordetella avium 197N 20586.4573 13526.021 22385.2718 4181.8754 69952611 amyA Carbon cycling Carbon degradataion Starch Shewanella frigidimarina NCIMB 400 24968.6683 15809.61973333 77359848 bphC Organic Remediation Aromatics Polycyclic aromatics Pseudoalteromonas haloplanktis TAC125 21277.20305 7793.5996 7310.5294 3525.3553 53850118 sox Sulphur Sulphur oxidation Pseudaminobacter salicylatoxidans 7965.69855 120325752 ureC Nitrogen Ammonification Marinobacter aquaeolei VT8 11150.04896667 9326.3376 7652.64375 94471279 narG Nitrogen Denitrification uncultured bacterium 19576.3878 70672935 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 18697.3418 6728.88426667 69287553 ara Carbon cycling Carbon degradataion Hemicellulose Kineococcus radiotolerans SRS30216 33470.2034 13279.8659 25477.23316667 146415312 czcD Metal Resistance Cadmium,Cobalt,Zinc Pichia guilliermondii ATCC 6260 7104.7805 70672941 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 21037.3101 6519.08523333 53729261 ureC Nitrogen Ammonification Actinobacillus pleuropneumoniae serovar 1 str. 4074 30457.93155 11564.76395 24115.57033333 68264608 alkK Organic Remediation Others Corynebacterium jeikeium K411 21826.78085 7819.31985 12713.03603333 68562084 CODH Carbon cycling Carbon fixation Rubrobacter xylanophilus DSM 9941 13970.7801 27527.54085 101976.3265 4514435 gyrB other category Phylogenetic marker Acinetobacter baumannii 34575.1232 12285.69913333 39030.35826667 33243241 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9771.83595 15843.49763333 73538380 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 8413.3441 7267.99615 71278129 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Colwellia psychrerythraea 34H 15334.2019 24421.05496667 68347928 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 14903.2062 14238.47845 11994.67916667 157679856 arsB Metal Resistance Arsenic Bacillus pumilus SAFR-032 26074.8575 19556.783 32895224 nirS Nitrogen Denitrification uncultured bacterium 25533.79575 10595.01085 10830.97226667 118578771 silC Metal Resistance Silver Pelobacter propionicus DSM 2379 15874.4998 12120.22305 88918533 ppx Phosphorus Phosphorus utilization Geobacter uraniumreducens Rf4 9730.2755 6169.1592 10279674 dsrB Sulphur sulfite reductase Desulfovibrio desulfuricans 6558.57425 7672267 PobA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 19647.87395 11582.887 10299.77726667 13473079 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 12291.1888 9546.03635 91781705 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 7847.35835 10771.01936667 7380.4972 127512008 cytochrome Energy process Energy process Shewanella loihica PV-4 39378.6777 37733.13716667 139002709 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 20371.1777 18651924 rubisco Carbon cycling Carbon fixation magnetite-containing magnetic vibrio 11318.95385 6779.8705 153813553 ChrA Metal Resistance Chromium Ruminococcus obeum ATCC 29174 19081.60495 29713.60606667 10863109 nifH Nitrogen Nitrogen fixation Desulfosporosinus orientis 9313.2902 5944.15193333 92910784 ophC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium sp. JLS 8462.43555 7786.918 77964440 chnB Organic Remediation Other Hydrocarbons Burkholderia sp. 383 14294.4496 12842.72995 117999875 phtA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 7414.12635 10007.8652 13898423 dsrA Sulphur sulfite reductase uncultured phenanthrene mineralizing bacterium 16244.08195 11701.68333333 10580737 atzA Organic Remediation Herbicides related compound Halobacterium sp. NRC-1 8627.32365 145297699 CadA Metal Resistance Cadmium Aeromonas salmonicida subsp. salmonicida A449 15045.2072 117982816 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 24651.32295 23811.78905 118718806 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 6349.91246667 88703575 CopA Metal Resistance Copper gamma proteobacterium KT 71 20401.6235 18497.79525 145592995 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Salinispora tropica CNB-440 9639.5888 7474.3349 119857507 nbzC Organic Remediation Aromatics Nitoaromatics Pseudomonas putida W619 14186.65075 5220.39586667 91782285 cumD Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 9091.53515 118502015 czcD Metal Resistance Cadmium,Cobalt,Zinc Pelobacter propionicus DSM 2379 15906.9125 16313.36465 115388179 pheA Organic Remediation Aromatics Other aromatics Aspergillus terreus NIH2624 43103.16935 77919195 CopA Metal Resistance Copper Pelobacter carbinolicus DSM 2380 27306.0471 4879.1087 9851.10126667 15173.0909 12291.34043333 6681674 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces thermoviolaceus 10429.69945 7645.181 126470038 bphC Organic Remediation Aromatics Polycyclic aromatics Rhodococcus rhodochrous 5680.77205 15890855 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Agrobacterium tumefaciens str. C58 11873.34745 7910.07825 16413306 amyA Carbon cycling Carbon degradataion Starch Listeria innocua 9505.91785 95102016 dehH Organic Remediation Chlorinated solvents Burkholderia sp. FA1 18022.6336 50547497 ppx Phosphorus Phosphorus utilization Yarrowia lipolytica 19918.89925 19765.06566667 151280004 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille 37397.1457 15484.66776667 6702.8815 115253535 pcpE Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 26215.5203 17543.6576 5067.68165 126207588 nrfA Nitrogen Dissimilatory N reduction Actinobacillus pleuropneumoniae L20 15622.61485 19136.4328 87119369 CorC Metal Resistance Cobalt Marinomonas sp. MED121 17060.7079 7049.29525 149983 adpB Organic Remediation Pesticides related compound Mycobacterium sp. 12513.5751 3271.45265 32476146 xylanase Carbon cycling Carbon degradataion Hemicellulose Rhodopirellula baltica SH 1 11758.339 111026255 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 34697.0643 146281555 czcD Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas stutzeri A1501 6883.70315 10027.5658 117983924 nitA Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 4345.65645 4126.78705 111611144 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 21751.7131 13651.1704 118743519 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacter lovleyi SZ 31527.40015 34574.86343333 157694026 ChrA Metal Resistance Chromium Bacillus pumilus SAFR-032 34393.33675 117981174 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 6118.8714 7649.5037 116251122 exaA Organic Remediation Chlorinated solvents Rhizobium leguminosarum bv. viciae 3841 12401.00065 11357.35085 15076287 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 7000.02745 12667608 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium UMTRAdsr626-21 18427.45035 14305.29613333 118072564 Arylest Organic Remediation Aromatics Other aromatics Shewanella woodyi ATCC 51908 18804.1058 18986.64113333 5881927 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces coelicolor A3(2) 15342.0519 1790875 gyrB other category Phylogenetic marker 25533.2529 16030.22653333 146410882 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 27706.49435 52349253 ara Carbon cycling Carbon degradataion Hemicellulose Bacillus licheniformis DSM 13 22373.04025 32895210 nirS Nitrogen Denitrification uncultured bacterium 8642.8957 34148180 dsrA Sulphur sulfite reductase Desulfotomaculum ruminis 11070.16095 119697693 nifH Nitrogen Nitrogen fixation Mycobacterium sp. KMS 8132.95805 8075.222 158341000 linB Organic Remediation Pesticides related compound Acaryochloris marina MBIC11017 14858.8505 54016528 akbF Organic Remediation Aromatics BTEX and related aromatics Nocardia farcinica IFM 10152 11173.7854 70930943 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 22860.5808 16470.5223 6014543 dsrA Sulphur sulfite reductase Solar Lake Mat Clone9 12620.0212 13310.60115 111074969 cmuA Organic Remediation Chlorinated solvents Heliobacillus mobilis 14847.11365 119898223 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. BH72 17018.81575 29335.784 99081914 phdCI Organic Remediation Aromatics Polycyclic aromatics Silicibacter sp. TM1040 20845.2593 152996725 ara Carbon cycling Carbon degradataion Hemicellulose Marinomonas sp. MWYL1 17772.60145 14007.1556 83638346 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. T104 9418.6964 77966700 pcpE Organic Remediation Herbicides related compound Burkholderia sp. 383 17145.08425 28841.33436667 4449.70405 91782280 CDO Organic Remediation Aromatics Other aromatics Burkholderia xenovorans LB400 10100.8134 27924215 FTHFS Carbon cycling Acetogenesis Xenopus laevis 6699.44475 14821.55096667 99030640 ppk Phosphorus Phosphorus utilization uncultured bacterium 61064.7163 35742.73346667 77378751 nirS Nitrogen Denitrification uncultured bacterium 13528.8894 15378.75663333 146402132 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acidiphilium cryptum JF-5 14958.57735 27762476 mdlD Organic Remediation Aromatics Other aromatics Pseudomonas putida 20653.6564 10174309 atzA Organic Remediation Herbicides related compound Bacillus halodurans C-125 7161.9846 2588988 phdI Organic Remediation Aromatics Polycyclic aromatics Nocardioides sp. 14192.8117 21628.77965 77381140 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 19459.82195 71143446 endochitinase Carbon cycling Carbon degradataion Chitin Trichoderma atroviride 9011.99785 118731256 bclA Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 15572.07755 10236.24476667 70729511 silC Metal Resistance Silver Pseudomonas fluorescens Pf-5 13694.9206 7235.4319 134098572 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 39208.5966 21934.7175 120553882 nifH Nitrogen Nitrogen fixation Marinobacter aquaeolei VT8 31794.1986 45386209 narG Nitrogen Denitrification unidentified bacterium 9418.20415 133739055 pimF Organic Remediation Aromatics Aromatic carboxylic acid Herminiimonas arsenicoxydans 16122.07115 15784.6305 154161489 czcD Metal Resistance Cadmium,Cobalt,Zinc Xanthobacter autotrophicus Py2 34387.07765 15376.2739 40217357 ZntA Metal Resistance Zinc Gordonia westfalica 5932.6572 8840.46993333 15529619 endochitinase Carbon cycling Carbon degradataion Chitin Trichoderma harzianum 13207.67465 83845505 pcaG Organic Remediation Aromatics Other aromatics Sulfitobacter sp. EE-36 15078.29175 10525.3947 113909954 CopA Metal Resistance Copper Shewanella baltica OS195 9959.97275 9151.25846667 110819766 chnB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 45871.8848 25204.032 119816169 nagG Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida W619 39935.59445 148240266 amyA Carbon cycling Carbon degradataion Starch Synechococcus sp. WH 7803 8434.7832 13201.1675 54016258 pheA Organic Remediation Aromatics Other aromatics Nocardia farcinica IFM 10152 7725.16075 85672717 ppx Phosphorus Phosphorus utilization Roseovarius sp. 217 7634.94785 88687733 phenol_oxidase Carbon cycling Carbon degradataion Lignin Spongipellis sp. FERM P-18171 55854.9348 53794.05126667 15791027 ZntA Metal Resistance Zinc Halobacterium sp. NRC-1 11635.1992 3377.05675 78043497 atzA Organic Remediation Herbicides related compound Carboxydothermus hydrogenoformans Z-2901 8864.78345 8752.63035 111018877 BADH Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 11525.00465 9519.6922 2315274 endoglucanase Carbon cycling Carbon degradataion Cellulose Hypocrea jecorina 20444.23255 10039309 gyrB other category Phylogenetic marker Capnocytophaga ochracea 9384.73925 9820.30693333 116205547 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 42358.86595 34167.2374 37694449 nifH Nitrogen Nitrogen fixation Chroococcidiopsis thermalis PCC 7203 14332.52845 119945688 TerD Metal Resistance Tellurium Psychromonas ingrahamii 37 30209.362 17896.66283333 118424316 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 10256.98815 8405.2845 106884696 dsrA Sulphur sulfite reductase Clostridium phytofermentans ISDg 16916.1267 27376430 alkK Organic Remediation Others Bradyrhizobium japonicum USDA 110 10319.70455 149915408 CopA Metal Resistance Copper Roseobacter sp. AzwK-3b 6215.59 5849.32105 70729553 ArsC Metal Resistance Arsenic Pseudomonas fluorescens Pf-5 11519.6209 6566.26665 126629086 CadA Metal Resistance Cadmium Marinobacter sp. ELB17 51942.99765 42862.3584 152957893 mauAB Organic Remediation Herbicides related compound uncultured bacterium 16964.16245 116222550 pcaG Organic Remediation Aromatics Other aromatics Solibacter usitatus Ellin6076 15668.9982 7778.78025 118053493 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 11705.2298 13190.44685 146341632 nifH Nitrogen Nitrogen fixation Bradyrhizobium sp. ORS278 9549.09755 11488.86295 89104738 TehB Metal Resistance Tellurium Yersinia pestis biovar Orientalis str. IP275 36289.2308 34165.24526667 19913902 cmuA Organic Remediation Chlorinated solvents Methanosarcina acetivorans C2A 8733.5086 13736.7609 13473384 ArsC Metal Resistance Arsenic Mesorhizobium loti MAFF303099 17216.32505 19014.28226667 7472.4675 126319479 atzB Organic Remediation Herbicides related compound Pseudomonas putida GB-1 63635.59315 91720048 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter sp. PRwf-1 11962.9994 8588.94893333 73542699 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 6974.7442 6069.4303 114738951 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Hyphomonas neptunium ATCC 15444 12410.19145 21310.07466667 60593148 dsrA Sulphur sulfite reductase uncultured prokaryote 10047.66615 119465388 mer Metal Resistance Mercury Nodularia spumigena CCY9414 14029.12845 26209.19325 99030613 ppk Phosphorus Phosphorus utilization uncultured bacterium 12914.1765 134291007 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia vietnamiensis G4 13737.59175 6159.79945 93004067 gyrB other category Phylogenetic marker Helicobacter muridarum 8386.64385 6111.08535 19909629 gyrB other category Phylogenetic marker Rhodoblastus acidophilus 9361.4335 13713.78595 216773 dehH Organic Remediation Chlorinated solvents Moraxella sp. B 23368.5013 13058.37755 119720740 catB Organic Remediation Aromatics BTEX and related aromatics Thermofilum pendens Hrk 5 27746.16265 23654.3193 158138808 napA Nitrogen Dissimilatory N reduction uncultured bacterium 6915.90985 4883 amyA Carbon cycling Carbon degradataion Starch Debaryomyces occidentalis 12409.3144 28203340 dsrA Sulphur sulfite reductase Clostridium tetani E88 13280.55105 89087580 ChrA Metal Resistance Chromium Bacillus sp. NRRL B-14911 10394.29865 50542688 rubisco Carbon cycling Carbon fixation uncultured bacterium 8946.4932 8486.7275 121711647 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus clavatus NRRL 1 10742.23585 6046.334 88643146 dsrA Sulphur sulfite reductase uncultured prokaryote 18698.6235 11135.4306 40062609 linB Organic Remediation Pesticides related compound uncultured bacterium 311 18288.0783 13189.57783333 91708893 mauAB Organic Remediation Herbicides related compound Methylobacillus flagellatus KT 13170.1616 22055.91735 23867901 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 18035.54015 17913.2215 91779181 benAB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 12515.04485 6615.20953333 88818066 glucoamylase Carbon cycling Carbon degradataion Starch Pseudoalteromonas tunicata D2 54550.9998 31217.68833333 3157702 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 16917.17615 29224.27896667 124006204 ChrA Metal Resistance Chromium Microscilla marina ATCC 23134 17237.9462 20659.3169 91783064 alkK Organic Remediation Others Burkholderia xenovorans LB400 28962.73135 14528.76306667 109632995 nirS Nitrogen Denitrification uncultured bacterium 13602.00285 18734.1296 158329483 ChrA Metal Resistance Chromium Azorhizobium caulinodans ORS 571 25112.7254 36318.22886667 114798313 merT Metal Resistance Mercury Hyphomonas neptunium ATCC 15444 20879.71845 119670964 mauAB Organic Remediation Herbicides related compound Azoarcus sp. BH72 14572.60375 58268820 glx Carbon cycling Carbon degradataion Lignin Cryptococcus neoformans var. neoformans JEC21 7469.74665 44829077 nifH Nitrogen Nitrogen fixation uncultured bacterium 20645.7068 20568.0873 4062844 cellobiase Carbon cycling Carbon degradataion Cellulose Bacillus sp. 15595.2285 85819928 CopA Metal Resistance Copper Tenacibaculum sp. MED152 24969.0423 17988.3893 146193640 exaA Organic Remediation Chlorinated solvents Bradyrhizobium sp. ORS278 8372.9695 8668.3626 402556 TerZ Metal Resistance Tellurium Clostridium acetobutylicum 20398.2989 32712.7276 110549561 nifH Nitrogen Nitrogen fixation Geobacter sp. FRC-32 14713.32285 18126.5828 84714948 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 19361.33355 6888.9387 109691727 ppx Phosphorus Phosphorus utilization Campylobacter jejuni subsp. doylei 269.97 18188.8185 15252.78755 39995472 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 12459.91745 18153.827 42553681 czcD Metal Resistance Cadmium,Cobalt,Zinc Gibberella zeae PH-1 28102.12075 157404605 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 29089.4851 56546.03875 36786085 ppk Phosphorus Phosphorus utilization Photorhabdus luminescens subsp. laumondii TTO1 7261.0674 89351417 Catechol Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 13757.5096 158449904 akbF Organic Remediation Aromatics BTEX and related aromatics Coprococcus eutactus ATCC 27759 36935.94815 39559.2862 10061.799 89317011 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium flavescens PYR-GCK 18264.54696667 146451005 cellobiase Carbon cycling Carbon degradataion Cellulose Lodderomyces elongisporus NRRL YB-4239 11471.9343 11644.08865 78513569 BADH Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 11682.16045 9209.34975 62432965 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 10058.9346 5443.7885 36787119 CopA Metal Resistance Copper Photorhabdus luminescens subsp. laumondii TTO1 7170.31885 19421863 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense 7030.059 11136.38745 154310969 amyA Carbon cycling Carbon degradataion Starch Botryotinia fuckeliana B05.10 39383.7447 27530821 gyrB other category Phylogenetic marker Nocardia brevicatena 6110.2869 12207.23076667 115500952 gyrB other category Phylogenetic marker Pseudomonas nitroreducens 17992.4932 12245.13093333 118469324 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 45037.3487 55274398 pheA Organic Remediation Aromatics Other aromatics uncultured bacterium 40367.9016 13496.79115 24374812 cytochrome Energy process Energy process Shewanella oneidensis MR-1 20521.6116 19947.5173 111063133 amyA Carbon cycling Carbon degradataion Starch Phaeosphaeria nodorum SN15 6729.08405 151560144 CopA Metal Resistance Copper Ochrobactrum anthropi ATCC 49188 19825.46435 27878.886575 68231993 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. EAN1pec 10290.81615 56965568 alkH Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 10337.1274 78186356 czcD Metal Resistance Cadmium,Cobalt,Zinc Pelodictyon luteolum DSM 273 8455.72645 5114.6704 47096895 ZntA Metal Resistance Zinc Listeria monocytogenes str. 1/2a F6854 15048.11495 14772.41466667 114308718 atzC Organic Remediation Herbicides related compound Nitrosomonas eutropha C91 16333.262 11730.45986667 62426307 TerC Metal Resistance Tellurium Brevibacterium linens BL2 8595.2871 15999.69106667 111019695 alkK Organic Remediation Others Rhodococcus sp. RHA1 11679.9941 7266.9715 118165602 mhpC Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium avium 104 11352.9472 15303.00145 28851139 Arylest Organic Remediation Aromatics Other aromatics Pseudomonas syringae pv. tomato str. DC3000 6191.7883 13460.69 110623048 arsB Metal Resistance Arsenic Zimmermannella faecalis 7346.3866 15329.83165 114335414 mer Metal Resistance Mercury Shewanella frigidimarina NCIMB 400 9233.6758 6998.88196667 78358095 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio desulfuricans G20 12974.25325 10278.59885 150836927 czcD Metal Resistance Cadmium,Cobalt,Zinc Marinomonas sp. MWYL1 12910.9752 38199758 pulA Carbon cycling Carbon degradataion Starch Corynebacterium diphtheriae 12902.26813333 157404682 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 15708.43695 148653462 CopA Metal Resistance Copper Psychrobacter sp. PRwf-1 13308.17855 157404654 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 44074.28205 56785434 phenol_oxidase Carbon cycling Carbon degradataion Lignin Panus rudis 11788.70755 166482 phytase Phosphorus Phosphorus utilization 13042.23235 7537.12546667 81096375 tutFDG Organic Remediation Aromatics BTEX and related aromatics Streptococcus suis 89/1591 18179.65805 39671.64955 4514441 gyrB other category Phylogenetic marker Acinetobacter calcoaceticus 32012.17685 37728.48335 33320480 dsrA Sulphur sulfite reductase sulfate-reducing bacterium oXyS1 17642.83055 10986.9084 152981001 silC Metal Resistance Silver Janthinobacterium sp. Marseille 13721.95195 53758880 nasA Nitrogen Assimilatory N reduction Methylococcus capsulatus str. Bath 13155.04925 22232.5221 32262572 ZntA Metal Resistance Zinc Helicobacter hepaticus ATCC 51449 11779.9149 18783.51276667 89338509 TerC Metal Resistance Tellurium Mycobacterium flavescens PYR-GCK 14092.8313 9824.58115 73534961 nifH Nitrogen Nitrogen fixation uncultured bacterium 6481.4002 15234620 pbrA Metal Resistance Lead Arabidopsis thaliana 21200.3287 24647.6408 4520.4093 13883202 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis CDC1551 9373.69325 24656.0104 110336270 czcA Metal Resistance Cadmium,Cobalt,Zinc Acidovorax sp. JS42 20933.89655 26616.2161 34148817 xylanase Carbon cycling Carbon degradataion Hemicellulose Klebsiella oxytoca 10420.0623 12127.54445 148254625 ohbAB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 9957.2512 66474859 cmuA Organic Remediation Chlorinated solvents uncultured bacterium 12028.2381 115259174 trzA Organic Remediation Herbicides related compound Rhizobium leguminosarum bv. viciae 3841 17917.63195 16796.2304 106768482 ZntA Metal Resistance Zinc Roseiflexus sp. RS-1 6891.3459 7828.6149 56314116 pcc Carbon cycling Carbon fixation Azoarcus sp. EbN1 17387.16655 76577384 nirS Nitrogen Denitrification uncultured bacterium 9044.36905 6814.5401 94312853 silC Metal Resistance Silver Ralstonia metallidurans CH34 6343.73085 44243470 catechol_B Organic Remediation Aromatics Other aromatics Pseudomonas putida 13887.26835 16163.603 156255120 dsrA Sulphur sulfite reductase uncultured bacterium 17585.4806 119671792 norB Nitrogen Denitrification Azoarcus sp. BH72 6699.3351 13026.06035 89241968 rubisco Carbon cycling Carbon fixation Calothrix desertica PCC 7102 12474.6312 14340.61863333 119956543 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 9728.3417 10057.25595 7210994 TerZ Metal Resistance Tellurium Streptomyces coelicolor A3(2) 13529.16965 8674.74216667 110592185 nirS Nitrogen Denitrification uncultured organism 31157.317 148273114 Arylest Organic Remediation Aromatics Other aromatics Clavibacter michiganensis subsp. michiganensis NCPPB 382 11537.55505 84382832 ZntA Metal Resistance Zinc Janibacter sp. HTCC2649 6151.27445 8081.4763 13474650 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 6133.99185 5098.3876 71148108 nasA Nitrogen Assimilatory N reduction Colwellia psychrerythraea 34H 14647.0111 11388.78635 56809523 nifH Nitrogen Nitrogen fixation uncultured bacterium 20371.89715 16274.90425 118048606 ChrA Metal Resistance Chromium Chloroflexus aggregans DSM 9485 11205.7426 71156192 pimF Organic Remediation Aromatics Aromatic carboxylic acid Nocardioides sp. JS614 33184.4163 8603.18835 41399216 ZntA Metal Resistance Zinc Mycobacterium avium subsp. paratuberculosis K-10 16223.19973333 10872.5362 4758.61273333 6250.4705 156861506 pcc Carbon cycling Carbon fixation Bacteroides uniformis ATCC 8492 16076.30095 49008.55995 116252599 catechol_B Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 18941.71285 115369390 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Stigmatella aurantiaca DW4/3-1 12207.08405 36652.99945 156935297 endochitinase Carbon cycling Carbon degradataion Chitin Enterobacter sakazakii ATCC BAA-894 5760.0059 76884072 atzA Organic Remediation Herbicides related compound Nitrosococcus oceani ATCC 19707 14951.4098 14268.69645 49612895 silC Metal Resistance Silver Erwinia carotovora subsp. atroseptica SCRI1043 11148.47995 150384767 ChrA Metal Resistance Chromium Victivallis vadensis ATCC BAA-548 9721.243 116050225 arsB Metal Resistance Arsenic Pseudomonas aeruginosa UCBPP-PA14 6710.64405 118751730 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Metallosphaera sedula DSM 5348 8998.3984 126434044 arsB Metal Resistance Arsenic Mycobacterium sp. JLS 9633.91145 31643.78416667 118062629 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus castenholzii DSM 13941 18806.89555 12326.1122 111282230 pcc Carbon cycling Carbon fixation Acidovorax avenae subsp. citrulli AAC00-1 45820.22585 7368.1831 77546458 TerC Metal Resistance Tellurium Pelobacter carbinolicus DSM 2380 15519.24105 27896.35216667 109700689 CopA Metal Resistance Copper Pseudoalteromonas atlantica T6c 12782.86485 17126.8104 145250048 endochitinase Carbon cycling Carbon degradataion Chitin Aspergillus niger 6774.948 9748.23795 77958371 ZntA Metal Resistance Zinc Yersinia bercovieri ATCC 43970 10265.22725 8101.9932 148264066 linB Organic Remediation Pesticides related compound Geobacter uraniumreducens Rf4 12090.72255 16762492 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Salmonella enterica subsp. enterica serovar Typhi str. CT18 13843.30925 9031.21495 50085093 TerZ Metal Resistance Tellurium Acinetobacter sp. ADP1 8347.6009 111059719 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Phaeosphaeria nodorum SN15 22841.77215 10673.9547 3744.7128 91774326 mcrA Carbon cycling Methane Methane production Methanococcoides burtonii DSM 6242 7911.992 12275.5073 23099575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanobacillus iheyensis HTE831 9978.1508 13366.33403333 146188535 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 16104.54705 9965435 CopA Metal Resistance Copper Streptococcus mutans 17514.82535 23167.7399 34604741 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 33279.8984 58301.6127 156523553 todC Organic Remediation Aromatics BTEX and related aromatics uncultured bacterium 10477.80265 12973.2921 49646299 ZntA Metal Resistance Zinc Yarrowia lipolytica CLIB122 7059.0975 10644.0347 110224986 gyrB other category Phylogenetic marker Streptococcus iniae 13017.014 13702.64855 55560166 nifH Nitrogen Nitrogen fixation uncultured bacterium 6449.35865 7372.227 114191233 cellobiase Carbon cycling Carbon degradataion Cellulose Aspergillus terreus NIH2624 26312.5048 13815825 alkK Organic Remediation Others Sulfolobus solfataricus P2 60713.52225 56477212 pchA Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. EbN1 25506.18863333 15556.36003333 150273771 ChrA Metal Resistance Chromium Bacteroides capillosus ATCC 29799 6895.5066 69302242 CODH Carbon cycling Carbon fixation Silicibacter sp. TM1040 11793.86755 61888.50595 18034307 dsrA Sulphur sulfite reductase Desulfonatronum lacustre 22611.0067 849192 endochitinase Carbon cycling Carbon degradataion Chitin Saccharomyces cerevisiae 7378.84595 85813892 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces rimosus subsp. paromomycinus 10194.37535 12270.0965 6969402 mnp Carbon cycling Carbon degradataion Lignin Amylostereum areolatum 21243.00565 19384.1363 436027 gyrB other category Phylogenetic marker Streptomyces coelicolor A3(2) 14955.77635 11685.15226667 88175734 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 12117.74335 84500843 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 13230.32705 10396.83495 89897377 ZntA Metal Resistance Zinc Desulfitobacterium hafniense Y51 7321.6245 10911.83645 110549828 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter sp. FRC-32 7310.11875 7764.8829 116249158 nahF Organic Remediation Aromatics Polycyclic aromatics Rhizobium leguminosarum bv. viciae 3841 12799.28795 11641.4017 73748035 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. CBDB1 15515.74445 5601.83675 118424433 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 10712.8545 34489.90996667 152025198 rubisco Carbon cycling Carbon fixation Bacillus cereus subsp. cytotoxis NVH 391-98 10909.74775 44163.342 71848035 czcA Metal Resistance Cadmium,Cobalt,Zinc Dechloromonas aromatica RCB 10927.9372 9318.90573333 77953594 czcA Metal Resistance Cadmium,Cobalt,Zinc Marinobacter aquaeolei VT8 12242.2466 18076028 mer Metal Resistance Mercury Pseudomonas sp. 10985.29405 10922.8284 29341503 xylanase Carbon cycling Carbon degradataion Hemicellulose Bacteroides thetaiotaomicron VPI-5482 21358.17035 14459.03133333 117559590 ppk Phosphorus Phosphorus utilization Aeromonas hydrophila subsp. hydrophila ATCC 7966 10468.371 7346.9218 119396975 Catechol Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 14098.98375 7588.787775 111071958 nirK Nitrogen Denitrification uncultured bacterium 9178.79735 111143309 bphC Organic Remediation Aromatics Polycyclic aromatics Arthrobacter sp. PJ3 78508.17675 28854202 arsB Metal Resistance Arsenic Pseudomonas syringae pv. tomato str. DC3000 11666.15595 58003211 vanA Carbon cycling Carbon degradataion Others Gluconobacter oxydans 621H 9300.9703 3157688 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 13556.40115 150956206 ppk Phosphorus Phosphorus utilization Klebsiella pneumoniae subsp. pneumoniae MGH 78578 20786.3195 17501.99156667 110621572 nifH Nitrogen Nitrogen fixation uncultured methanogenic archaeon 9725.6989 11888.39986667 21227541 cmuA Organic Remediation Chlorinated solvents Methanosarcina mazei Go1 13290.8415 14378.10946667 156233419 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus castenholzii DSM 13941 57345.50385 118666027 tfdA Organic Remediation Aromatics Chlorinated aromatics Delftia acidovorans SPH-1 18262.5786 29084.05746667 83638360 cmtAb Organic Remediation Aromatics Other aromatics Rhodococcus sp. T104 8876.40845 54027002 TerZ Metal Resistance Tellurium Nocardia farcinica IFM 10152 6179.8433 10235.12143333 124259740 pimF Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 14360.5135 7543.84965 6969420 mnp Carbon cycling Carbon degradataion Lignin Bondarzewia montana 14634.38015 8261.13926667 89949623 gyrB other category Phylogenetic marker Saccharophagus degradans 2-40 8572.34715 145228397 BADH Organic Remediation Aromatics Other aromatics Aspergillus niger 32510.59645 14696.86305 156111214 pcc Carbon cycling Carbon fixation Bacteroides ovatus ATCC 8483 11908.63065 12302.142 27377800 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 18146.1327 78047894 ZitB Metal Resistance Zinc Xanthomonas campestris pv. vesicatoria str. 85-10 7065.8597 1255496 nifH Nitrogen Nitrogen fixation unidentified bacterium 16853.8941 10713.3748 126724729 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2150 24274.27355 157315293 ChrA Metal Resistance Chromium Thermotoga lettingae TMO 9402.07195 8220.44243333 77382982 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens PfO-1 39331.43195 113955459 czcD Metal Resistance Cadmium,Cobalt,Zinc Synechococcus sp. CC9311 18498.1015 18248.76915 116624491 exaA Organic Remediation Chlorinated solvents Solibacter usitatus Ellin6076 13525.5607 25995.1719 24421341 nirS Nitrogen Denitrification uncultured organism 13156.3489 14636.20645 116609970 nmoA Organic Remediation Aromatics Nitoaromatics Arthrobacter sp. FB24 10994.4609 88866251 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 10678.9225 11879.98013333 20977652 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 20804.5464 38890.49636667 154251547 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 13146.38675 8642.56406667 157285377 nosZ Nitrogen Denitrification uncultured bacterium 10394.54365 8134.83793333 6466828 hydrogenase Energy process Energy process Desulfitobacterium dehalogenans 25970.1446 108755448 gyrB other category Phylogenetic marker Segniliparus rugosus 7357.50465 31222.5415 145231268 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus niger 20835.405 22652.01946667 113530712 nirS Nitrogen Denitrification Ralstonia eutropha H16 25292.19885 19433.22385 28627817 gyrB other category Phylogenetic marker Streptomyces roseochromogenes subsp. oscitans 12220.33525 5460.24955 120406767 nhh Organic Remediation Aromatics Nitoaromatics Mycobacterium vanbaalenii PYR-1 14610.7808 71908949 czcD Metal Resistance Cadmium,Cobalt,Zinc Dechloromonas aromatica RCB 9095.30965 8520.4183 18147153 gyrB other category Phylogenetic marker Alcanivorax sp. Mho1 15312.3797 11697.555 133912249 pimF Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 17822.76865 118729863 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 12861.19755 87199618 ChrA Metal Resistance Chromium Novosphingobium aromaticivorans DSM 12444 9159.4257 7120.64636667 46199672 phenol_oxidase Carbon cycling Carbon degradataion Lignin Thermus thermophilus HB27 13030.77525 8761.8145 40743317 czcD Metal Resistance Cadmium,Cobalt,Zinc Aspergillus nidulans FGSC A4 38140.0446 32315.64105 157919576 catB Organic Remediation Aromatics BTEX and related aromatics Caldivirga maquilingensis IC-167 54841.9021 53343.76005 108524633 mer Metal Resistance Mercury Plasmid QKH54 13630.20275 27901577 gyrB other category Phylogenetic marker Williamsia murale 9227.6348 10147.8061 118030691 pchCF Organic Remediation Aromatics BTEX and related aromatics Burkholderia phymatum STM815 14579.2938 84043029 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 12494.51315 151563605 nbaC Organic Remediation Aromatics Nitoaromatics Ochrobactrum anthropi ATCC 49188 57196.29216667 55177.46525 58616383 TerZ Metal Resistance Tellurium Azoarcus sp. EbN1 14294.4885 17461.3823 84375881 TerC Metal Resistance Tellurium Vibrio splendidus 12B01 14591.7283 11082.699 58269470 tfdA Organic Remediation Aromatics Chlorinated aromatics Cryptococcus neoformans var. neoformans JEC21 14343.39133333 5577.19715 111057812 tfdA Organic Remediation Aromatics Chlorinated aromatics Phaeosphaeria nodorum SN15 13429.9532 63257357 CopA Metal Resistance Copper Pseudomonas syringae pv. syringae B728a 33881.95885 16371.50213333 90204213 chnB Organic Remediation Other Hydrocarbons Mycobacterium vanbaalenii PYR-1 7311.6327 115397177 exoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus terreus NIH2624 11867.04625 6605.4509 113950132 gyrB other category Phylogenetic marker Shewanella baltica OS195 17348.53385 126726683 CopA Metal Resistance Copper Rhodobacterales bacterium HTCC2150 11320.6819 15370.446 149175824 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Planctomyces maris DSM 8797 17039.20315 113732401 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 10017.22885 9294.41845 115388659 cellobiase Carbon cycling Carbon degradataion Cellulose Aspergillus terreus NIH2624 15251.56755 118057424 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas mendocina ymp 13109.21125 119504526 exaA Organic Remediation Chlorinated solvents marine gamma proteobacterium HTCC2080 7185.83 148550991 tftH Organic Remediation Aromatics Chlorinated aromatics Sphingomonas wittichii RW1 8650.4422 10469.5554 89343847 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens DSM 15236 19924.53766667 72118807 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 12953.84565 10994.3983 83025982 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 10649.0156 12463.5181 27351209 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 18362.17416667 5606.1072 29893189 alkJ Organic Remediation Other Hydrocarbons Rhodococcus ruber 9056.02025 86566917 amyA Carbon cycling Carbon degradataion Starch Frankia sp. CcI3 9790.7509 16882.1032 118046703 nifH Nitrogen Nitrogen fixation Chloroflexus aggregans DSM 9485 39301.4248 39647581 bco Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 35507.544 29705.2772 71006620 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Ustilago maydis 521 19911.9919 71854338 tutFDG Organic Remediation Aromatics BTEX and related aromatics Streptococcus pyogenes MGAS5005 12650.24755 6510.0493 12765.0328 50284929 endochitinase Carbon cycling Carbon degradataion Chitin Candida glabrata CBS138 57561.6983 27178.571 6028.8395 3157736 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 9229.7521 151562204 TerC Metal Resistance Tellurium Ochrobactrum anthropi ATCC 49188 11576.78835 91800324 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrobacter hamburgensis X14 7382.59235 7415.009 144898943 dsrB Sulphur sulfite reductase Magnetospirillum gryphiswaldense MSR-1 36464.0094 118470723 czcD Metal Resistance Cadmium,Cobalt,Zinc Mycobacterium smegmatis str. MC2 155 7905.5618 12464.82493333 83950170 nbaC Organic Remediation Aromatics Nitoaromatics Roseovarius nubinhibens ISM 16774.9212 24079.88706667 6162.84675 71383714 nasA Nitrogen Assimilatory N reduction Symploca atlantica PCC 8002 9457.6202 10113.33925 121302629 linB Organic Remediation Pesticides related compound Ralstonia pickettii 12J 14067.30635 91225408 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio alginolyticus 12G01 40415.1989 78365334 nrfA Nitrogen Dissimilatory N reduction Shewanella sp. PV-4 7238.0721 152957873 mauAB Organic Remediation Herbicides related compound Methylophaga marina 24629.09615 2266938 mnp Carbon cycling Carbon degradataion Lignin Trametes versicolor 6871.0101 7325.64425 77961546 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Yersinia mollaretii ATCC 43969 20329.93435 31660.12903333 1754623 Xamo Organic Remediation Other Hydrocarbons Pseudomonas aeruginosa 7443.5852 83776226 xylanase Carbon cycling Carbon degradataion Hemicellulose Aspergillus oryzae 8299.80855 23725.7538 30138882 alkK Organic Remediation Others Nitrosomonas europaea ATCC 19718 14540.799 7664.0819 89361802 ppx Phosphorus Phosphorus utilization Xanthobacter autotrophicus Py2 9949.51525 25549.21795 78356864 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 28573.8633 119857542 vdh Carbon cycling Carbon degradataion Others Pseudomonas putida W619 9157.30255 10482.4323 78224098 cytochrome Energy process Energy process Geobacter metallireducens GS-15 21712.1287 29542066 CopA Metal Resistance Copper Coxiella burnetii RSA 493 10357.2241 13305.3924 157404325 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 15052.21185 91788852 PobA Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas sp. JS666 10658.3755 6605.0907 5431.82975 6914.4689 17119.87345 125621693 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Vibrio cholerae V51 10457.5433 17027.34206667 145282906 dsrA Sulphur sulfite reductase Pyrobaculum arsenaticum DSM 13514 7696.5025 12272.502 117994280 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN 12405.4523 19338.5958 115258561 xylA Carbon cycling Carbon degradataion Hemicellulose Rhizobium leguminosarum bv. viciae 3841 14406.41095 10455.41645 39995701 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 37567.03415 115422863 nagK Organic Remediation Aromatics Aromatic carboxylic acid Bordetella avium 197N 8675.87845 158514512 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 19729.54195 156060879 glx Carbon cycling Carbon degradataion Lignin Sclerotinia sclerotiorum 1980 19526.12795 12041.4565 157960168 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 24337.73985 28119.80553333 145215517 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium gilvum PYR-GCK 7240.80755 8728.8182 89047094 ara Carbon cycling Carbon degradataion Hemicellulose Oceanicola granulosus HTCC2516 19425.00085 22823.38006667 13093634 tfdA Organic Remediation Aromatics Chlorinated aromatics Mycobacterium leprae 21879.9389 505629 lip Carbon cycling Carbon degradataion Lignin Phanerochaete chrysosporium 13202.5379 88857166 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Pseudoalteromonas tunicata D2 8063.4798 17222.14826667 86280236 alkK Organic Remediation Others Rhizobium etli CFN 42 11040.14615 9155.71025 77996565 akbF Organic Remediation Aromatics BTEX and related aromatics Carboxydothermus hydrogenoformans Z-2901 22831.7118 43711.11616667 15127832 msmABCD Organic Remediation Others Marinosulfonomonas methylotropha 56564.4444 37016.09935 145589012 czcD Metal Resistance Cadmium,Cobalt,Zinc Polynucleobacter sp. QLW-P1DMWA-1 17742.83685 91978151 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 13695.59056667 14974.816 152982226 linB Organic Remediation Pesticides related compound Janthinobacterium sp. Marseille 12896.6974 118467571 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 9376.2774 12735.9323 129279118 nifH Nitrogen Nitrogen fixation uncultured bacterium 6657.8188 83415009 phenol_oxidase Carbon cycling Carbon degradataion Lignin Termitomyces sp. NS/Mg 15986.90445 10386.47545 3157680 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 40567.34225 21385.1771 124894210 ChrA Metal Resistance Chromium Burkholderia dolosa AUO158 10628.00745 13872.17543333 70986178 pheA Organic Remediation Aromatics Other aromatics Aspergillus fumigatus Af293 13037.83785 91792464 cytochrome Energy process Energy process Shewanella denitrificans OS217 14814.7726 10039313 gyrB other category Phylogenetic marker Flexibacter japonensis 6053.62355 29160349 exoglucanase Carbon cycling Carbon degradataion Cellulose Exidia glandulosa 10213.01945 8528.92945 114335906 SilA Metal Resistance Silver Shewanella frigidimarina NCIMB 400 8440.82545 8175.8306 113527678 alkK Organic Remediation Others Ralstonia eutropha H16 13891.9549 16281.17 56180234 ArsC Metal Resistance Arsenic Idiomarina loihiensis L2TR 8357.57645 20388.81805 3334811 vanA Carbon cycling Carbon degradataion Others Streptomyces coelicolor A3(2) 5411.50835 91802634 ZntA Metal Resistance Zinc Nitrobacter hamburgensis X14 28485.3861 20245.94946667 70982915 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus fumigatus Af293 6650.6793 26548.92643333 118733324 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 13570.99405 7983.83683333 84043129 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 16700.46556667 14675.64023333 118738719 ophC Organic Remediation Aromatics Aromatic carboxylic acid Dinoroseobacter shibae DFL 12 11171.5001 13009.76553333 18852.5212 126348276 nagI Organic Remediation Aromatics Aromatic carboxylic acid Streptomyces ambofaciens ATCC 23877 10374.9542 24094.4781 111150904 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 8231.2403 8820.69895 99083391 nifH Nitrogen Nitrogen fixation uncultured bacterium 11688.0767 13749.81195 115390953 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus terreus NIH2624 10283.5779 11802.1997 34604747 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 31040.191 148628320 bphA Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 8806.79985 157404566 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 13322.74755 72162533 gyrB other category Phylogenetic marker Thermobifida fusca YX 18219.3591 11198.84096667 76558196 alkK Organic Remediation Others Natronomonas pharaonis DSM 2160 12775.39945 37548682 nifH Nitrogen Nitrogen fixation uncultured bacterium 12473.0849 103488160 mer Metal Resistance Mercury Sphingopyxis alaskensis RB2256 13443.56735 12399.1027 3177.13055 27348949 ZntA Metal Resistance Zinc Bradyrhizobium japonicum USDA 110 7037.74005 134095881 silC Metal Resistance Silver Herminiimonas arsenicoxydans 18548.91405 14183.4994 158141895 ChrA Metal Resistance Chromium Alkaliphilus oremlandii OhILAs 8145.9484 119406456 BpH Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 11937.9366 56475860 dehH109 Organic Remediation Chlorinated solvents Azoarcus sp. EbN1 19505.0513 6294.0952 34498556 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Chromobacterium violaceum ATCC 12472 14766.42225 8462.78086667 113196156 endochitinase Carbon cycling Carbon degradataion Chitin Serratia marcescens 14101.505 8650.8963 27354699 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 5886.03555 13434.4323 4827.04865 126721233 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 11549.0165 12982.33685 115371933 ppk Phosphorus Phosphorus utilization Stigmatella aurantiaca DW4/3-1 33181.56846667 64220.88815 8490.6483 1255518 nifH Nitrogen Nitrogen fixation unidentified bacterium 15931.67315 139478541 mer Metal Resistance Mercury uncultured soil bacterium 9565.02465 799197 mcrA Carbon cycling Methane Methane production 5915.013 24380118 pimF Organic Remediation Aromatics Aromatic carboxylic acid Streptococcus mutans UA159 8761.01065 32054.4606 50542716 rubisco Carbon cycling Carbon fixation uncultured bacterium 32338.71405 22810.39805 146281451 cytochrome Energy process Energy process Pseudomonas stutzeri A1501 23310.0536 151421640 arsB Metal Resistance Arsenic Nitratiruptor sp. SB155-2 8756.5142 22328.92066667 76803782 alkB Organic Remediation Other Hydrocarbons Pseudomonas sp. PT10 6061.4985 90196221 ZntA Metal Resistance Zinc Mycobacterium vanbaalenii PYR-1 10590.41025 10142.44563333 16262669 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 38993.4657 30058.9902 145322737 mauAB Organic Remediation Herbicides related compound Novosphingobium aromaticivorans DSM 12444 46875.30275 12830.9886 89336465 nifH Nitrogen Nitrogen fixation Desulfitobacterium hafniense Y51 13215.81615 5381.58436667 61657886 glucoamylase Carbon cycling Carbon degradataion Starch Hypocrea lixii 24974.0621 15007.2805 119377721 phn Organic Remediation Herbicides related compound Paracoccus denitrificans PD1222 8498.1577 8586.49305 119813285 CopA Metal Resistance Copper Pseudomonas putida W619 9087.37845 12978.92833333 119513466 phn Organic Remediation Herbicides related compound Nodularia spumigena CCY9414 10124.8947 90435144 pcc Carbon cycling Carbon fixation Flavobacterium johnsoniae UW101 12234.05225 9551.157 57641826 atzA Organic Remediation Herbicides related compound Thermococcus kodakarensis KOD1 6804.8905 7728.9913 78061123 TerC Metal Resistance Tellurium Burkholderia sp. 383 14065.73655 10212.82633333 62468128 bco Organic Remediation Aromatics Aromatic carboxylic acid Thauera selenatis 27856.42425 26930.634 119513368 ChrA Metal Resistance Chromium Nodularia spumigena CCY9414 14405.8673 12715.4042 156861194 endochitinase Carbon cycling Carbon degradataion Chitin Bacteroides uniformis ATCC 8492 6919.76035 7939.81515 88863366 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 14091.32146667 56475801 pimF Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 7701.18305 88703619 ppx Phosphorus Phosphorus utilization gamma proteobacterium KT 71 74829.1052 63224.0447 21106440 vanA Carbon cycling Carbon degradataion Others Xanthomonas axonopodis pv. citri str. 306 14819.8172 9971333 gyrB other category Phylogenetic marker Cellulophaga lytica 11057.9376 21616730 phenol_oxidase Carbon cycling Carbon degradataion Lignin basidiomycete C30 12636.7809 8950.7125 109290298 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5521.1612 10076.5255 73538695 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 22429.83285 16394.74585 110612711 gyrB other category Phylogenetic marker uncultured bacterium 9964.3874 23242.22343333 90406942 CopA Metal Resistance Copper Psychromonas sp. CNPT3 8167.16645 8223.28506667 56710238 Catechol Organic Remediation Aromatics Other aromatics uncultured bacterium 19499.72 9218.0909 67539004 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus nidulans FGSC A4 13491.74275 17678.93953333 5844.33326667 110632282 nirK Nitrogen Denitrification uncultured bacterium 11510.7138 111150139 alkK Organic Remediation Others Frankia alni ACN14a 11956.0687 8319.24905 40062872 bphD Organic Remediation Aromatics Polycyclic aromatics uncultured bacterium 442 12931.14985 157373634 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 9387.3957 45169801 pectinase Carbon cycling Carbon degradataion Pectin Penicillium expansum 9071.7424 9766.04725 46581228 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 18668.4154 16244.0874 91781011 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 6995.71265 71846863 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB 14879.1146 156255122 dsrA Sulphur sulfite reductase uncultured bacterium 15165.6995 71383742 nasA Nitrogen Assimilatory N reduction Synechococcus sp. WH 8008 23490.3524 11030.50625 47093236 CopA Metal Resistance Copper Listeria monocytogenes str. 4b H7858 18566.26426667 17084.51516667 77378513 nirS Nitrogen Denitrification uncultured bacterium 14690.4322 8780.64796667 32141278 xylanase Carbon cycling Carbon degradataion Hemicellulose Streptomyces coelicolor A3(2) 11235.67465 8656.10955 90654477 glucoamylase Carbon cycling Carbon degradataion Starch Chaetomium thermophilum 20467.26435 89358269 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 26512.63425 26353.3893 86196890 tfdA Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 9459.4508 10238.9871 53758253 CorC Metal Resistance Cobalt Methylococcus capsulatus str. Bath 5811.0427 118470455 trzE Organic Remediation Herbicides related compound Mycobacterium smegmatis str. MC2 155 7939.0687 153868922 CopA Metal Resistance Copper Beggiatoa sp. PS 6657.2186 46519977 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 29606.25046667 87281028 nirK Nitrogen Denitrification uncultured bacterium 5590.37065 71367082 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 8993.8243 153155 amyA Carbon cycling Carbon degradataion Starch 14351.38895 87282283 amyA Carbon cycling Carbon degradataion Starch Synechococcus sp. WH 5701 9180.39615 110224984 gyrB other category Phylogenetic marker Streptococcus infantis 8703.88365 88643409 dsrA Sulphur sulfite reductase uncultured prokaryote 6786.7223 66840889 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 11004.2833 119896978 pcc Carbon cycling Carbon fixation Azoarcus sp. BH72 3695.106 78517769 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 5303.6862 33385621 nifH Nitrogen Nitrogen fixation uncultured bacterium 11234.21233333 117579413 CopA Metal Resistance Copper Gramella forsetii KT0803 9378.02495 7837.2492 126734305 pcaG Organic Remediation Aromatics Other aromatics Roseobacter sp. CCS2 9604.196 52350378 cellobiase Carbon cycling Carbon degradataion Cellulose Bacillus licheniformis DSM 13 7399.7208 119952533 cbdA Organic Remediation Aromatics Chlorinated aromatics Arthrobacter aurescens TC1 6988.5779 106775145 ZntA Metal Resistance Zinc Clostridium sp. OhILAs 3798.05085 77163958 Arylest Organic Remediation Aromatics Other aromatics Nitrosococcus oceani ATCC 19707 12633.5712 55978076 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3405.56855 121703924 pheA Organic Remediation Aromatics Other aromatics Aspergillus clavatus NRRL 1 22521.21903333 157679477 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 12484.99195 83756282 endochitinase Carbon cycling Carbon degradataion Chitin Salinibacter ruber DSM 13855 5293.00593333 94984832 glucoamylase Carbon cycling Carbon degradataion Starch Deinococcus geothermalis DSM 11300 8975.46323333 37360775 endochitinase Carbon cycling Carbon degradataion Chitin Nocardiopsis sp. F96 7274.427 71369287 czcD Metal Resistance Cadmium,Cobalt,Zinc Nocardioides sp. JS614 13694.18035 22776654 phn Organic Remediation Herbicides related compound Oceanobacillus iheyensis HTE831 5729.13025 40678 endoglucanase Carbon cycling Carbon degradataion Cellulose Clostridium thermocellum 14902.7486 111025701 pcc Carbon cycling Carbon fixation Rhodococcus sp. RHA1 5976.63625 28542653 nirS Nitrogen Denitrification uncultured bacterium 6548.1129 32895070 nirS Nitrogen Denitrification uncultured bacterium 6893.13605 84326723 ZntA Metal Resistance Zinc Pseudomonas aeruginosa 2192 10023.12585 133909785 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 5499.505 75675649 czcA Metal Resistance Cadmium,Cobalt,Zinc Nitrobacter winogradskyi Nb-255 6481.67105 27348228 endochitinase Carbon cycling Carbon degradataion Chitin Nocardiopsis prasina 11882.78915 88777428 PobA Organic Remediation Aromatics Aromatic carboxylic acid Reinekea sp. MED297 20119.09296667 100123316 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia pseudomallei S13 8154.0429 87119641 FTHFS Carbon cycling Acetogenesis Marinomonas sp. MED121 7350.41655 86566918 amyA Carbon cycling Carbon degradataion Starch Frankia sp. CcI3 6329.6185 114319987 ArsC Metal Resistance Arsenic Alkalilimnicola ehrlichei MLHE-1 5761.9659 78518136 czcA Metal Resistance Cadmium,Cobalt,Zinc Bradyrhizobium sp. BTAi1 7926.8828 4808638 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 7088.8578 158114234 tfdA Organic Remediation Aromatics Chlorinated aromatics Frankia sp. EAN1pec 6038.7091 7748.24905 70730631 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas fluorescens Pf-5 5003.14985 114320324 rubisco Carbon cycling Carbon fixation Alkalilimnicola ehrlichei MLHE-1 19879.66145 118435066 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 4870.86095 114537780 mer Metal Resistance Mercury Fulvimarina pelagi HTCC2506 4597.65825 86169583 gyrB other category Phylogenetic marker Weissella viridescens 13183.48925 90330658 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 15088.1599 5046.989 73762768 nirK Nitrogen Denitrification uncultured bacterium 15145.22495 87281133 nirK Nitrogen Denitrification uncultured bacterium 6317.5928 99083455 nifH Nitrogen Nitrogen fixation uncultured bacterium 7873.51655 76097012 cda Carbon cycling Carbon degradataion Starch uncultured soil bacterium 14320.89363333 119193875 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Coccidioides immitis RS 7216.30805 62468096 bco Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus tolulyticus 11276.0585 38569327 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. FL2 8607.7556 118582234 hydrogenase Energy process Energy process Shewanella decolorationis 10108.69793333 109454046 alkK Organic Remediation Others Roseobacter denitrificans OCh 114 14444.48416667 18160974 dsrB Sulphur sulfite reductase Pyrobaculum aerophilum str. IM2 10319.68505 77460913 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 5894.85095 1906845 exoglucanase Carbon cycling Carbon degradataion Cellulose Claviceps purpurea 6070.1838 70704870 gyrB other category Phylogenetic marker Acholeplasma parvum 8281.9506 77378657 nirS Nitrogen Denitrification uncultured bacterium 8657.08933333 120607861 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 12060.23825 103488057 czcA Metal Resistance Cadmium,Cobalt,Zinc Sphingopyxis alaskensis RB2256 5059.99225 78102347 nifH Nitrogen Nitrogen fixation uncultured bacterium 15613.56483333 119461883 phn Organic Remediation Herbicides related compound Nodularia spumigena CCY9414 9419.08333333 23326703 gyrB other category Phylogenetic marker Bifidobacterium longum NCC2705 6736.26255 20088982 ppx Phosphorus Phosphorus utilization Methanosarcina acetivorans C2A 6571.64625 51710766 benAB Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter radioresistens 5762.8481 157404598 rd Organic Remediation Chlorinated solvents Dehalococcoides sp. VS 11808.7602 134094417 sox Sulphur Sulphur oxidation Herminiimonas arsenicoxydans 9811.04305 91785731 alkK Organic Remediation Others Burkholderia xenovorans LB400 3966.496 5578703 benAB Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas xenophaga 10537.43685 148254987 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 7957.55325 1255482 nifH Nitrogen Nitrogen fixation unidentified bacterium 10990.0024 4105514 rubisco Carbon cycling Carbon fixation Halothiobacillus neapolitanus 5336.8994 76803674 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 7991.46525 126721740 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 6012.448 27382379 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 9068.454 86158424 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C 5062.0651 99867110 TerZ Metal Resistance Tellurium Escherichia coli 5266.21315 126654273 pcc Carbon cycling Carbon fixation Bacillus sp. B14905 4878.8079 86355887 endoglucanase Carbon cycling Carbon degradataion Cellulose Rhizobium etli CFN 42 28983.3341 17430371 ZntA Metal Resistance Zinc Ralstonia solanacearum 5138.02655 50058081 rubisco Carbon cycling Carbon fixation Acaryochloris marina MBIC11017 9910.3034 1669848 czcD Metal Resistance Cadmium,Cobalt,Zinc 7840.6248 92431362 pcaG Organic Remediation Aromatics Other aromatics Mycobacterium sp. JLS 11338.56355 154155569 chnB Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 6772.7648 126320278 silC Metal Resistance Silver Pseudomonas putida GB-1 7581.94623333 7839375 ureC Nitrogen Ammonification Prochlorococcus marinus 7131.10805 77956821 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Yersinia bercovieri ATCC 43970 22532.99203333 3900.73515 118705681 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 11623.44905 145205262 nifH Nitrogen Nitrogen fixation Prosthecochloris vibrioformis DSM 265 6367.9941 63020529 alkB Organic Remediation Other Hydrocarbons Acinetobacter venetianus 11215.3688 119400774 pcpE Organic Remediation Herbicides related compound Aspergillus clavatus NRRL 1 4525.9939 108777177 TerC Metal Resistance Tellurium Yersinia pestis Nepal516 9501.63493333 71841644 narG Nitrogen Denitrification Pseudomonas stutzeri 4550.15255 118730589 vanA Carbon cycling Carbon degradataion Others Delftia acidovorans SPH-1 7869.21355 91203531 gyrB other category Phylogenetic marker Candidatus Kuenenia stuttgartiensis 6942.53965 48431134 gyrB other category Phylogenetic marker Picrophilus torridus DSM 9790 21514.22926667 71155022 pcc Carbon cycling Carbon fixation Nocardioides sp. JS614 10298.57135 114331807 ppx Phosphorus Phosphorus utilization Nitrosomonas eutropha C71 5956.1755 119482658 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Neosartorya fischeri NRRL 181 41747.9845 73671381 xylF Organic Remediation Aromatics BTEX and related aromatics Rhodococcus erythropolis 5887.5288 110646156 alkK Organic Remediation Others Alcanivorax borkumensis SK2 4916.7852 126707644 nagI Organic Remediation Aromatics Aromatic carboxylic acid Sagittula stellata E-37 8255.9062 78355608 cytochrome Energy process Energy process Desulfovibrio desulfuricans G20 3764.9304 145592593 pcc Carbon cycling Carbon fixation Salinispora tropica CNB-440 10283.1747 150865269 czcD Metal Resistance Cadmium,Cobalt,Zinc Pichia stipitis CBS 6054 7510.25865 56809505 nifH Nitrogen Nitrogen fixation uncultured bacterium 17160.6652 116753644 czcD Metal Resistance Cadmium,Cobalt,Zinc Methanosaeta thermophila PT 17214.13375 86572402 amyA Carbon cycling Carbon degradataion Starch Rhodopseudomonas palustris HaA2 6982.80976667 124257905 tutFDG Organic Remediation Aromatics BTEX and related aromatics Desulfobacula toluolica 7145.4724 119358780 endochitinase Carbon cycling Carbon degradataion Chitin Trichoderma atroviride 16414.11386667 71740575 CopA Metal Resistance Copper Pelobacter propionicus DSM 2379 10786.2494 88866357 dsrA Sulphur sulfite reductase bacterium LS2003 8876.8485 116804546 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 8463.13255 58254610 Al Metal Resistance Aluminum Lactobacillus acidophilus NCFM 16557.4195 17431022 rcnA Metal Resistance Cobalt,Nickel Ralstonia solanacearum 5983.7047 145009780 czcD Metal Resistance Cadmium,Cobalt,Zinc Magnaporthe grisea 70-15 10756.9945 28202824 ChrA Metal Resistance Chromium Clostridium tetani E88 13401.8718 74038398 nirS Nitrogen Denitrification uncultured bacterium 9367.67635 71145129 nirS Nitrogen Denitrification Colwellia psychrerythraea 34H 5808.4552 27352211 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 14364.80516667 23465870 czcD Metal Resistance Cadmium,Cobalt,Zinc Bifidobacterium longum NCC2705 7103.4277 38373165 nirK Nitrogen Denitrification uncultured bacterium 8712.7562 22776318 pcpB Organic Remediation Herbicides related compound Oceanobacillus iheyensis HTE831 21249.60123333 50085190 nmoA Organic Remediation Aromatics Nitoaromatics Acinetobacter sp. ADP1 10818.81376667 62131450 ppk Phosphorus Phosphorus utilization uncultured bacterium 5838.3599 118568243 chnB Organic Remediation Other Hydrocarbons Mycobacterium ulcerans Agy99 8460.83245 157373483 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 41621.54303333 149783143 nirK Nitrogen Denitrification uncultured bacterium 5212.9147 24375962 cytochrome Energy process Energy process Shewanella oneidensis MR-1 15463.94663333 78045925 PobA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. vesicatoria str. 85-10 16583.8082 7812.79215 5194.4631 5583.4453 153887456 czcA Metal Resistance Cadmium,Cobalt,Zinc Ralstonia pickettii 12D 6531.62455 7578780 merB Metal Resistance Mercury Streptomyces sp. CHR28 7354.02775 126721479 phn Organic Remediation Herbicides related compound Roseobacter sp. SK209-2-6 9324.34595 13249575 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 16758.80683333 71279950 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Colwellia psychrerythraea 34H 9763.29425 28272316 CopA Metal Resistance Copper Lactobacillus plantarum WCFS1 21308.91186667 109452548 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8408.3288 114327315 exaA Organic Remediation Chlorinated solvents Granulibacter bethesdensis CGDNIH1 5435.07995 77461743 cytochrome Energy process Energy process Pseudomonas fluorescens PfO-1 5444.9845 46519997 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6922.20723333 34541491 ppk Phosphorus Phosphorus utilization Porphyromonas gingivalis W83 6316.325 113473873 ArsC Metal Resistance Arsenic Sphingomonas sp. KA1 28586.24996667 94424450 proO Organic Remediation Aromatics Other aromatics Sphingomonas sp. SKA58 7102.4236 6570.66445 71915736 xylA Carbon cycling Carbon degradataion Hemicellulose Thermobifida fusca YX 9413.202 110224956 gyrB other category Phylogenetic marker Streptococcus acidominimus 10244.00086667 76260677 amyA Carbon cycling Carbon degradataion Starch Chloroflexus aurantiacus J-10-fl 12148.53936667 4034.3713 3157724 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 6940.4713 950106 rubisco Carbon cycling Carbon fixation 7675.37545 91779945 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 4540.93795 110819001 CDH Carbon cycling Carbon degradataion Cellulose Rhodococcus sp. RHA1 6193.93 58701872 catechol_B Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens 5613.27485 75703975 nifH Nitrogen Nitrogen fixation Anabaena variabilis ATCC 29413 9345.6333 87199696 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Novosphingobium aromaticivorans DSM 12444 5815.21933333 120326977 mer Metal Resistance Mercury Marinobacter aquaeolei VT8 11069.48575 14273660 gyrB other category Phylogenetic marker Mycobacterium asiaticum 12661.16245 126236393 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium sp. JLS 7416.1235 86165674 atzA Organic Remediation Herbicides related compound Marinomonas sp. MED121 9206.67865 93357655 Catechol Organic Remediation Aromatics Other aromatics Ralstonia metallidurans CH34 7661.0599 62391245 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 11828.41155 152975463 CorC Metal Resistance Cobalt Bacillus cereus subsp. cytotoxis NVH 391-98 7244.93185 76573856 rd Organic Remediation Chlorinated solvents Desulfitobacterium sp. KBC1 8045.05565 110594277 ZntA Metal Resistance Zinc Acidovorax sp. JS42 5789.14245 70725497 CopA Metal Resistance Copper Staphylococcus haemolyticus JCSC1435 14118.81396667 83848337 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Croceibacter atlanticus HTCC2559 7515.39993333 126459476 ArsA Metal Resistance Arsenic Pyrobaculum calidifontis JCM 11548 20979.0502 154156769 alkH Organic Remediation Other Hydrocarbons Parvibaculum lavamentivorans DS-1 5611.6125 35213585 Al Metal Resistance Aluminum Gloeobacter violaceus PCC 7421 5683.16915 91783085 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 8576.19133333 126654881 nitro Organic Remediation Others Cyanothece sp. CCY0110 15299.2321 2196848 gyrB other category Phylogenetic marker Shewanella sp. SP-3 7856.2401 145319978 ureC Nitrogen Ammonification Enterobacter sp. 638 4313.79615 34482869 arsB Metal Resistance Arsenic Wolinella succinogenes 7687.4885 56313587 pcc Carbon cycling Carbon fixation Azoarcus sp. EbN1 4522.4159 119226114 pheA Organic Remediation Aromatics Other aromatics uncultured bacterium 8334.5938 41058920 ChnD Organic Remediation Other Hydrocarbons Brachymonas petroleovorans 22321.06343333 113475254 ZntA Metal Resistance Zinc Trichodesmium erythraeum IMS101 11114.81855 83316848 nirK Nitrogen Denitrification uncultured bacterium 4081.618 50555173 endochitinase Carbon cycling Carbon degradataion Chitin Yarrowia lipolytica 7281.8887 74055516 gyrB other category Phylogenetic marker Thiobacillus denitrificans ATCC 25259 6980.79985 90204437 ureC Nitrogen Ammonification Mycobacterium vanbaalenii PYR-1 8131.3137 153010557 czcD Metal Resistance Cadmium,Cobalt,Zinc Ochrobactrum anthropi ATCC 49188 9814.51583333 145603717 glx Carbon cycling Carbon degradataion Lignin Magnaporthe grisea 70-15 7542.01045 71065462 pimF Organic Remediation Aromatics Aromatic carboxylic acid Psychrobacter arcticus 273-4 9641.08973333 49333361 endoglucanase Carbon cycling Carbon degradataion Cellulose Volvariella volvacea 11608.8887 120600339 cytochrome Energy process Energy process Shewanella sp. W3-18-1 10975.9397 7859.78896667 62000046 napA Nitrogen Dissimilatory N reduction Desulfovibrio desulfuricans 5636.27235 4535.4255 27544666 gyrB other category Phylogenetic marker Legionella quinlivanii 4493.24125 118002791 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Comamonas testosteroni KF-1 14903.8002 70986694 endoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus fumigatus Af293 25418.4099 21957263 TerZ Metal Resistance Tellurium Yersinia pestis KIM 11339.1075 39974845 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Magnaporthe grisea 70-15 6324.94725 108463154 czcA Metal Resistance Cadmium,Cobalt,Zinc Myxococcus xanthus DK 1622 4042.64083333 158338206 ChrA Metal Resistance Chromium Acaryochloris marina MBIC11017 12556.044 91201982 czcC Metal Resistance Cadmium,Cobalt,Zinc Candidatus Kuenenia stuttgartiensis 10786.3236 156527289 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Vibrio harveyi ATCC BAA-1116 8165.7106 92115637 gyrB other category Phylogenetic marker Nitrobacter hamburgensis X14 4825.58465 7339869 nifH Nitrogen Nitrogen fixation Acetobacterium woodii 6310.3498 93354836 ZntA Metal Resistance Zinc Ralstonia metallidurans CH34 7628.50965 152999010 cytochrome Energy process Energy process Shewanella baltica OS185 10077.4149 88643451 dsrA Sulphur sulfite reductase uncultured prokaryote 44317.09623333 37605066 phytase Phosphorus Phosphorus utilization Penicillium sp. 11554.51406667 882067 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Alteromonas sp. 7469.6556 119879226 BADH Organic Remediation Aromatics Other aromatics Stenotrophomonas maltophilia R551-3 11742.2921 114228027 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Alkalilimnicola ehrlichei MLHE-1 4764.0442 39995640 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 24687.60743333 153892922 cellobiase Carbon cycling Carbon degradataion Cellulose Opitutaceae bacterium TAV2 7903.93945 7480.10415 55978138 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11151.7061 6119631 alkB Organic Remediation Other Hydrocarbons Pseudomonas chlororaphis 7740.92565 66769940 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas campestris pv. campestris str. 8004 14918.60365 67156337 pcaG Organic Remediation Aromatics Other aromatics Azotobacter vinelandii AvOP 10586.46803333 15209405 ppk Phosphorus Phosphorus utilization Acidithiobacillus ferrooxidans 7009.761 4168.7626 119391475 narG Nitrogen Denitrification uncultured bacterium 6020.90485 55376485 ZntA Metal Resistance Zinc Haloarcula marismortui ATCC 43049 7171.88045 82940947 cellobiase Carbon cycling Carbon degradataion Cellulose Paenibacillus sp. HC1 10070.0586 52840802 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Legionella pneumophila subsp. pneumophila str. Philadelphia 1 17253.6526 82618395 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 21797.6836 7224.9171 46389807 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 10064.6679 50657075 rubisco Carbon cycling Carbon fixation uncultured bacterium 7621.46346667 118045694 pcc Carbon cycling Carbon fixation Chloroflexus aggregans DSM 9485 7709.35735 119387319 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Paracoccus denitrificans PD1222 4948.12046667 7385020 xylanase Carbon cycling Carbon degradataion Hemicellulose Caldibacillus cellulovorans 15461.48325 32364160 gyrB other category Phylogenetic marker Pasteurella trehalosi 9087.12425 149917988 pcc Carbon cycling Carbon fixation Plesiocystis pacifica SIR-1 5780.03135 516602 rubisco Carbon cycling Carbon fixation 15107.531 86356552 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium etli CFN 42 5074.56045 91690461 mhpA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 9569.725 114326873 ppx Phosphorus Phosphorus utilization Granulibacter bethesdensis CGDNIH1 8129.21215 92441842 CopA Metal Resistance Copper Mycobacterium sp. KMS 18098.0714 84517088 ChrA Metal Resistance Chromium Loktanella vestfoldensis SKA53 4758.06065 70985811 amyA Carbon cycling Carbon degradataion Starch Aspergillus fumigatus Af293 5900.1175 83309357 proO Organic Remediation Aromatics Other aromatics Magnetospirillum magneticum AMB-1 10984.17115 89053927 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 24002.11096667 114227201 dsrB Sulphur sulfite reductase Alkalilimnicola ehrlichei MLHE-1 8631.98915 12862420 Catechol Organic Remediation Aromatics Other aromatics Pseudomonas sp. CA10 6200.5355 21673844 sox Sulphur Sulphur oxidation Chlorobium tepidum TLS 5451.3857 84388196 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 11591.5148 77978460 ureC Nitrogen Ammonification Yersinia intermedia ATCC 29909 6406.9556 37791155 phenol_oxidase Carbon cycling Carbon degradataion Lignin Volvariella volvacea 27510.21746667 12659196 nifH Nitrogen Nitrogen fixation Treponema sp. ZAS-2 10382.2399 110679310 pcc Carbon cycling Carbon fixation Roseobacter denitrificans OCh 114 8553.34445 5851792 pheA Organic Remediation Aromatics Other aromatics Ralstonia sp. KN1 7055.55066667 152965863 TerC Metal Resistance Tellurium Kineococcus radiotolerans SRS30216 16442.21045 158433460 ChrA Metal Resistance Chromium Eubacterium dolichum DSM 3991 8196.53143333 88791363 ppx Phosphorus Phosphorus utilization Nitrococcus mobilis Nb-231 5548.83175 38194102 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium 7006.49475 119898807 bphA Organic Remediation Aromatics Polycyclic aromatics Azoarcus sp. BH72 17890.22833333 94967932 xylA Carbon cycling Carbon degradataion Hemicellulose Acidobacteria bacterium Ellin345 15635.28873333 118661466 nagI Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia multivorans ATCC 17616 12594.41345 91687908 ChrA Metal Resistance Chromium Burkholderia xenovorans LB400 10663.5515 37523738 czcD Metal Resistance Cadmium,Cobalt,Zinc Gloeobacter violaceus PCC 7421 15644.35905 118504379 pulA Carbon cycling Carbon degradataion Starch Pelobacter propionicus DSM 2379 4362.85205 23099315 pcc Carbon cycling Carbon fixation Oceanobacillus iheyensis HTE831 12926.19375 19909603 gyrB other category Phylogenetic marker Halobacterium salinarum 11364.14203333 118473535 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium smegmatis str. MC2 155 5820.48575 13171023 pectinase Carbon cycling Carbon degradataion Pectin Aspergillus niger 7424.05635 89358235 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthobacter autotrophicus Py2 3495.49545 22537374 pulA Carbon cycling Carbon degradataion Starch Streptococcus agalactiae 2603V/R 9483.36865 139478553 mer Metal Resistance Mercury uncultured alpha proteobacterium 8446.9561 19909779 gyrB other category Phylogenetic marker Oscillatoria agardhii 5126.95435 14594858 mannanase Carbon cycling Carbon degradataion Hemicellulose Cellvibrio japonicus 13908.82215 110551987 nifH Nitrogen Nitrogen fixation Methanoculleus marisnigri JR1 7682.018 8053.5039 13517015 gyrB other category Phylogenetic marker marine CFB-group bacterium MBIC04452 4058.4292 89045827 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola granulosus HTCC2516 5525.82255 40742492 czcD Metal Resistance Cadmium,Cobalt,Zinc Aspergillus nidulans FGSC A4 7929.97795 55792811 xylanase Carbon cycling Carbon degradataion Hemicellulose Penicillium canescens 6590.95973333 71365811 gyrB other category Phylogenetic marker Nocardioides sp. JS614 10823.0256 104783750 CorC Metal Resistance Cobalt Pseudomonas entomophila L48 8437.84306667 46444417 czcD Metal Resistance Cadmium,Cobalt,Zinc Candida albicans SC5314 9250.1843 117983317 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 12164.85725 84705196 czcA Metal Resistance Cadmium,Cobalt,Zinc Parvularcula bermudensis HTCC2503 12155.5477 116191607 tfdA Organic Remediation Aromatics Chlorinated aromatics Chaetomium globosum CBS 148.51 21376.67346667 23100016 amyA Carbon cycling Carbon degradataion Starch Oceanobacillus iheyensis HTE831 9210.52436667 55791888 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 9946.13975 14165200 Catechol Organic Remediation Aromatics Other aromatics Acinetobacter radioresistens 5844.9181 19909671 gyrB other category Phylogenetic marker Arhodomonas aquaeolei 4271.7746 118434457 PobA Organic Remediation Aromatics Aromatic carboxylic acid Stappia aggregata IAM 12614 14995.6662 68343000 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens Pf-5 5611.53776667 29609465 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 5547.24005 153832630 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio harveyi HY01 17523.13593333 115607457 alkB Organic Remediation Other Hydrocarbons uncultured bacterium 4796.3164 662884 xylanase Carbon cycling Carbon degradataion Hemicellulose Bacillus sp. 8381.7786 86742884 nagG Organic Remediation Aromatics Aromatic carboxylic acid Frankia sp. CcI3 9342.1398 149809648 sox Sulphur Sulphur oxidation Roseobacter sp. AzwK-3b 5038.11523333 109452449 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 9766.3054 144901310 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Magnetospirillum gryphiswaldense MSR-1 9071.5664 71467679 amyA Carbon cycling Carbon degradataion Starch Haloarcula hispanica 10568.10825 99038859 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Silicibacter sp. TM1040 10917.52346667 86572122 ArsC Metal Resistance Arsenic Rhodopseudomonas palustris HaA2 3891.92195 111019506 Catechol Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 5452.8917 118028658 nagG Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia phymatum STM815 6108.6212 32895238 nirS Nitrogen Denitrification uncultured bacterium 5404.71785 53754016 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Legionella pneumophila str. Lens 6026.23935 114795205 endochitinase Carbon cycling Carbon degradataion Chitin Serratia marcescens 9735.4566 31414751 endochitinase Carbon cycling Carbon degradataion Chitin Verticillium fungicola 4899.2891 78514929 phtA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 4936.04565 119373686 catB Organic Remediation Aromatics BTEX and related aromatics Paracoccus denitrificans PD1222 7627.2549 115260004 akbF Organic Remediation Aromatics BTEX and related aromatics Rhizobium leguminosarum bv. viciae 3841 13210.70493333 149139808 CadA Metal Resistance Cadmium Lentisphaera araneosa HTCC2155 18998.5588 70607693 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus acidocaldarius DSM 639 10532.6011 114563719 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 5668.71613333 116068566 endochitinase Carbon cycling Carbon degradataion Chitin Synechococcus sp. RS9916 11519.123 56963275 pcc Carbon cycling Carbon fixation Bacillus clausii KSM-K16 25107.76833333 77378479 nirS Nitrogen Denitrification uncultured bacterium 8318.31225 150866302 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pichia stipitis CBS 6054 13027.0235 14718443 phenol_oxidase Carbon cycling Carbon degradataion Lignin Fusarium proliferatum 8728.63605 76874900 CorC Metal Resistance Cobalt Pseudoalteromonas haloplanktis TAC125 7212.72436667 13422880 ArsC Metal Resistance Arsenic Caulobacter crescentus CB15 6168.17085 67515867 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus nidulans FGSC A4 7280.37923333 66967791 nifH Nitrogen Nitrogen fixation uncultured bacterium 7101.19655 86157399 cytochrome Energy process Energy process Anaeromyxobacter dehalogenans 2CP-C 8845.88806667 86142355 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Flavobacterium sp. MED217 9081.90586667 37594477 phytase Phosphorus Phosphorus utilization Obesumbacterium proteus 10931.58805 27530795 gyrB other category Phylogenetic marker Gordonia amarae 7986.0633 134100477 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 14928.50676667 30248034 gyrB other category Phylogenetic marker Nitrosomonas europaea ATCC 19718 6522.44865 113947415 czcA Metal Resistance Cadmium,Cobalt,Zinc Shewanella baltica OS195 5772.74535 55469841 nosZ Nitrogen Denitrification uncultured bacterium 12238.7345 77381501 pcaG Organic Remediation Aromatics Other aromatics Pseudomonas fluorescens PfO-1 6245.02375 6066.0187 88709182 TerC Metal Resistance Tellurium Flavobacteriales bacterium HTCC2170 10778.3168 82746645 CopA Metal Resistance Copper Clostridium beijerincki NCIMB 8052 4523.57755 25027433 ArsC Metal Resistance Arsenic Corynebacterium efficiens YS-314 10164.80095 148254827 linB Organic Remediation Pesticides related compound Bradyrhizobium sp. BTAi1 10289.4835 146282619 exaA Organic Remediation Chlorinated solvents Pseudomonas stutzeri A1501 6010.42485 148846486 czcA Metal Resistance Cadmium,Cobalt,Zinc Planctomyces maris DSM 8797 5747.84165 119489370 mer Metal Resistance Mercury Lyngbya sp. PCC 8106 17666.2259 88702530 nosZ Nitrogen Denitrification uncultured soil bacterium 8189.9981 116228731 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 5996.0568 110624481 gyrB other category Phylogenetic marker Shewanella sp. W01 8875.45733333 76056947 narG Nitrogen Denitrification uncultured bacterium 4500.6933 72121037 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 7897.73686667 14521493 nifH Nitrogen Nitrogen fixation Pyrococcus abyssi GE5 35141.61546667 56809517 nifH Nitrogen Nitrogen fixation uncultured bacterium 4354.0572 54014925 linB Organic Remediation Pesticides related compound Nocardia farcinica IFM 10152 16114.09905 119670680 xylF Organic Remediation Aromatics BTEX and related aromatics Azoarcus sp. BH72 16370.6918 58428287 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas oryzae pv. oryzae KACC10331 14746.00225 148845627 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Planctomyces maris DSM 8797 24610.01896667 3697.37695 37548712 nifH Nitrogen Nitrogen fixation uncultured bacterium 6828.62435 121607630 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Verminephrobacter eiseniae EF01-2 9579.5212 558708 glucoamylase Carbon cycling Carbon degradataion Starch Saccharomyces cerevisiae 7926.1995 158523550 dsrA Sulphur sulfite reductase uncultured bacterium 18032.65775 158319963 catB Organic Remediation Aromatics BTEX and related aromatics Alkaliphilus oremlandii OhILAs 18570.75893333 83766270 tfdA Organic Remediation Aromatics Chlorinated aromatics Aspergillus oryzae 6067.91065 94425287 xylanase Carbon cycling Carbon degradataion Hemicellulose Sphingomonas sp. SKA58 5486.86055 8517644 sox Sulphur Sulphur oxidation Paracoccus denitrificans 8702.77025 158138891 narG Nitrogen Denitrification uncultured bacterium 10316.3275 139003068 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5234.98063333 78694161 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium sp. BTAi1 51006.463 7965.9331 90330768 pimF Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 6308.3871 6729166 gyrB other category Phylogenetic marker Actinoplanes cyaneus 13926.52505 116804590 nasA Nitrogen Assimilatory N reduction uncultured prokaryote 5104.48165 39996860 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 34014.20215 46108130 czcD Metal Resistance Cadmium,Cobalt,Zinc Gibberella zeae PH-1 8894.24236667 147847720 SmtA Metal Resistance Miscellaneous Synechococcus sp. WH 7803 4548.0689 39981995 hydrogenase Energy process Energy process Geobacter sulfurreducens PCA 9838.089 89952845 endochitinase Carbon cycling Carbon degradataion Chitin Saccharophagus degradans 2-40 22247.59423333 76883675 pcc Carbon cycling Carbon fixation Nitrosococcus oceani ATCC 19707 13169.92436667 146297956 CopA Metal Resistance Copper Flavobacterium johnsoniae UW101 10289.42913333 126355810 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas putida GB-1 28872.28865 91200421 pimF Organic Remediation Aromatics Aromatic carboxylic acid Candidatus Kuenenia stuttgartiensis 10513.42365 110818384 tftH Organic Remediation Aromatics Chlorinated aromatics Rhodococcus sp. RHA1 10614.63765 28270020 amyA Carbon cycling Carbon degradataion Starch Lactobacillus plantarum WCFS1 4939.72815 91776916 czcA Metal Resistance Cadmium,Cobalt,Zinc Methylobacillus flagellatus KT 7769.2492 113732397 tfdA Organic Remediation Aromatics Chlorinated aromatics Caulobacter sp. K31 6212.11455 15788807 nifH Nitrogen Nitrogen fixation uncultured bacterium 6582.01375 78223255 cytochrome Energy process Energy process Geobacter metallireducens GS-15 8313.13205 28919715 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Neurospora crassa OR74A 9355.8681 6064.2611 58530664 gyrB other category Phylogenetic marker Ferrimonas marina 34973.1602 77969336 mauAB Organic Remediation Herbicides related compound Burkholderia sp. 383 12455.6167 4914630 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 6061.39076667 158316920 amyA Carbon cycling Carbon degradataion Starch Frankia sp. EAN1pec 7328.9092 84778349 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 16596.61536667 732513 mnp Carbon cycling Carbon degradataion Lignin 17329.67565 91716858 czcA Metal Resistance Cadmium,Cobalt,Zinc Shewanella denitrificans OS217 5136.38045 93005718 ChrA Metal Resistance Chromium Psychrobacter cryohalolentis K5 9606.17675 116230021 silC Metal Resistance Silver Solibacter usitatus Ellin6076 10868.91356667 146409297 phn Organic Remediation Herbicides related compound Bradyrhizobium sp. BTAi1 5484.5878 118706836 exaA Organic Remediation Chlorinated solvents Sphingomonas wittichii RW1 5639.5002 47680327 rubisco Carbon cycling Carbon fixation uncultured bacterium 4670.30305 78222150 cytochrome Energy process Energy process Geobacter metallireducens GS-15 7668.6146 106895848 ppx Phosphorus Phosphorus utilization Clostridium sp. OhILAs 8164.45973333 51243149 pcpE Organic Remediation Herbicides related compound Sphingomonas sp. tfd44 9863.156 4097317 rubisco Carbon cycling Carbon fixation Hydrogenophaga pseudoflava 7887.00486667 39648482 ALN Organic Remediation Others Rhodopseudomonas palustris CGA009 6394.49163333 154247909 CadA Metal Resistance Cadmium Xanthobacter autotrophicus Py2 4868.8376 148254221 sox Sulphur Sulphur oxidation Bradyrhizobium sp. BTAi1 5122.46885 118074941 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Shewanella woodyi ATCC 51908 6028.84785 82741258 czcA Metal Resistance Cadmium,Cobalt,Zinc Shewanella sp. W3-18-1 5378.268 77383793 endochitinase Carbon cycling Carbon degradataion Chitin Pseudomonas fluorescens PfO-1 15270.71976667 56409824 gyrB other category Phylogenetic marker Vibrio aestuarianus 8238.0898 112463999 nirK Nitrogen Denitrification uncultured bacterium 6133.9887 18958171 nicdehydr Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter oxydans 7352.68035 144905556 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 18426.48166667 119026577 amyA Carbon cycling Carbon degradataion Starch Bifidobacterium adolescentis ATCC 15703 6896.69746667 134093764 ArsC Metal Resistance Arsenic Herminiimonas arsenicoxydans 7794.04925 77458371 ChrA Metal Resistance Chromium Pseudomonas fluorescens PfO-1 21131.63946667 133913095 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Saccharopolyspora erythraea NRRL 2338 7358.86775 151582326 cellobiase Carbon cycling Carbon degradataion Cellulose Opitutaceae bacterium TAV2 5585.73795 114800435 czcA Metal Resistance Cadmium,Cobalt,Zinc Hyphomonas neptunium ATCC 15444 4906.1063 7839576 linC Organic Remediation Pesticides related compound Amycolatopsis mediterranei 6412.66906667 78495246 ZntA Metal Resistance Zinc Rhodopseudomonas palustris BisB18 8395.19623333 89513030 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 4310.44545 118715018 atzC Organic Remediation Herbicides related compound Burkholderia multivorans ATCC 17616 4771.3947 149811120 mer Metal Resistance Mercury Roseobacter sp. AzwK-3b 9952.86256667 50083301 gyrB other category Phylogenetic marker Acinetobacter sp. ADP1 9422.6646 108803396 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Rubrobacter xylanophilus DSM 9941 6103.78365 110585921 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 4287.6185 157961469 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 4342.18895 149300 pulA Carbon cycling Carbon degradataion Starch 6979.7683 46981124 nirS Nitrogen Denitrification Bacillus sp. R22 6052.24835 83316700 nirK Nitrogen Denitrification uncultured bacterium 8395.43295 68568553 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus acidocaldarius DSM 639 6868.27045 152023599 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus subsp. cytotoxis NVH 391-98 6257.9627 93277206 gyrB other category Phylogenetic marker Streptomyces sp. MC1 7548.4781 90302795 CopA Metal Resistance Copper Coccidioides immitis RS 8502.486825 123992183 amyA Carbon cycling Carbon degradataion Starch Microscilla marina ATCC 23134 16621.0388 115260447 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Rhizobium leguminosarum bv. viciae 3841 7314.94223333 85710072 gyrB other category Phylogenetic marker Erythrobacter sp. NAP1 9380.8418 58416302 ZntA Metal Resistance Zinc Achromobacter xylosoxidans 8421.86145 145222473 pcc Carbon cycling Carbon fixation Mycobacterium gilvum PYR-GCK 7095.98245 16119766 nitA Organic Remediation Aromatics Other aromatics Agrobacterium tumefaciens str. C58 14934.9286 5218.8538 2196846 gyrB other category Phylogenetic marker Shewanella sp. DLM-7 16551.8366 78222045 cytochrome Energy process Energy process Geobacter metallireducens GS-15 5991.7665 45839 nirS Nitrogen Denitrification Pseudomonas stutzeri 5879.52105 118424424 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6879.05615 144948191 cda Carbon cycling Carbon degradataion Starch Petrotoga mobilis SJ95 9287.1383 13541048 amyA Carbon cycling Carbon degradataion Starch Thermoplasma volcanium GSS1 7424.99715 70981548 nagG Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus fumigatus Af293 11753.1345 110334813 CopA Metal Resistance Copper Acidovorax sp. JS42 13619.67673333 75704170 nifH Nitrogen Nitrogen fixation Anabaena variabilis ATCC 29413 5770.5702 145553776 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 7382.88625 151563940 ChrA Metal Resistance Chromium Ochrobactrum anthropi ATCC 49188 13494.66025 152978383 nrfA Nitrogen Dissimilatory N reduction Actinobacillus succinogenes 130Z 16507.39755 84778309 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5856.1909 158338215 ureC Nitrogen Ammonification Acaryochloris marina MBIC11017 5011.65045 1698442 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin 7776.23125 23304308 mnp Carbon cycling Carbon degradataion Lignin Heterobasidion annosum 7390.86395 48290 amyA Carbon cycling Carbon degradataion Starch Thermoactinomyces vulgaris 13457.00485 120605956 CopA Metal Resistance Copper Acidovorax sp. JS42 8864.95253333 89473884 nifH Nitrogen Nitrogen fixation uncultured cyanobacterium 11503.4115 56909051 alkJ Organic Remediation Other Hydrocarbons Bacillus clausii KSM-K16 6133.7659 113728498 gyrB other category Phylogenetic marker Sinorhizobium medicae WSM419 8306.17425 148474792 napA Nitrogen Dissimilatory N reduction uncultured bacterium 11113.32795 71383909 nasA Nitrogen Assimilatory N reduction uncultured bacterium 10218.18535 110819055 alkB Organic Remediation Other Hydrocarbons Rhodococcus sp. RHA1 7755.8724 139003387 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 8676.6401 57015494 gyrB other category Phylogenetic marker Campylobacter upsaliensis RM3195 28610.7378 77454726 arsB Metal Resistance Arsenic Rhodococcus erythropolis PR4 13994.32123333 34604742 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8385.14565 115519141 nifH Nitrogen Nitrogen fixation Rhodopseudomonas palustris BisA53 5735.5564 54307248 gyrB other category Phylogenetic marker Photobacterium profundum SS9 30311.48135 146408185 ZitB Metal Resistance Zinc Bradyrhizobium sp. BTAi1 11042.1041 32447396 mer Metal Resistance Mercury Rhodopirellula baltica SH 1 9754.1372 38479597 rubisco Carbon cycling Carbon fixation Acidithiobacillus ferrooxidans 8224.26675 157375904 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 13223.6524 39996330 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 14442.16433333 63257436 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. syringae B728a 22314.89766667 89358823 catB Organic Remediation Aromatics BTEX and related aromatics Xanthobacter autotrophicus Py2 16114.59765 83316600 nirK Nitrogen Denitrification uncultured bacterium 13639.2324 5971.82885 119401254 BpH Organic Remediation Aromatics Aromatic carboxylic acid Aspergillus clavatus NRRL 1 15382.70015 89209326 amyA Carbon cycling Carbon degradataion Starch Bacillus weihenstephanensis KBAB4 35795.355 106774701 nifH Nitrogen Nitrogen fixation Clostridium sp. OhILAs 4893.28515 40063004 phtA Organic Remediation Aromatics Aromatic carboxylic acid uncultured bacterium 560 14996.2848 88860516 endochitinase Carbon cycling Carbon degradataion Chitin Pseudoalteromonas tunicata D2 10224.3935 16264794 ara Carbon cycling Carbon degradataion Hemicellulose Sinorhizobium meliloti 1021 14421.51023333 27351195 chnB Organic Remediation Other Hydrocarbons Bradyrhizobium japonicum USDA 110 6673.3476 127511209 cytochrome Energy process Energy process Shewanella loihica PV-4 5925.0707 112803043 ppk Phosphorus Phosphorus utilization Campylobacter curvus 525.92 5698.971 111018896 alkK Organic Remediation Others Rhodococcus sp. RHA1 6890.4007 111023819 dmsA Organic Remediation Others Rhodococcus sp. RHA1 7231.1015 15890502 xylA Carbon cycling Carbon degradataion Hemicellulose Agrobacterium tumefaciens str. C58 9118.4635 56799009 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 7651.8738 45421754 endochitinase Carbon cycling Carbon degradataion Chitin Serratia marcescens 4497.32546667 53728931 dmsA Organic Remediation Others Actinobacillus pleuropneumoniae serovar 1 str. 4074 10981.6549 115525806 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 5754.54845 110824846 LMO Carbon cycling Carbon degradataion Others Rhodococcus sp. RHA1 18568.2051 12001884 nifH Nitrogen Nitrogen fixation uncultured bacterium NR1626 12053.54355 83841061 pcc Carbon cycling Carbon fixation Sulfitobacter sp. NAS-14.1 4166.62605 37900195 rubisco Carbon cycling Carbon fixation Synechococcus sp. OH20 55424.36005 119386067 czcD Metal Resistance Cadmium,Cobalt,Zinc Paracoccus denitrificans PD1222 11957.46986667 115369560 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Stigmatella aurantiaca DW4/3-1 10890.1056 46444544 endochitinase Carbon cycling Carbon degradataion Chitin Candida albicans SC5314 41780.42093333 157374310 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 33791.29276667 15073683 ChrA Metal Resistance Chromium Sinorhizobium meliloti 11432.4858 8489.7084 5774.50895 21489735 tcpA Organic Remediation Herbicides related compound Ralstonia eutropha 15420.27805 20501993 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6299.11805 74419073 gyrB other category Phylogenetic marker Nitrobacter winogradskyi Nb-255 6848.87985 106765104 FTHFS Carbon cycling Acetogenesis Clostridium phytofermentans ISDg 22038.31956667 114570304 pcc Carbon cycling Carbon fixation Maricaulis maris MCS10 5048.2216 86748186 proO Organic Remediation Aromatics Other aromatics Rhodopseudomonas palustris HaA2 11572.75705 8631.901325 32542.15183333 33349.5923 116496526 gyrB other category Phylogenetic marker uncultured bacterium 5238.63286667 118772235 bclA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas albilineans 8560.6398 146293063 CadA Metal Resistance Cadmium Shewanella putrefaciens CN-32 7754.78145 90199375 scnABC Organic Remediation Others Mycobacterium vanbaalenii PYR-1 6546.6321 28212012 pimF Organic Remediation Aromatics Aromatic carboxylic acid Clostridium tetani E88 12381.45375 29293222 nifH Nitrogen Nitrogen fixation uncultured bacterium 18441.51015 119526155 mer Metal Resistance Mercury Nocardioides sp. JS614 11555.74293333 62391902 Catechol Organic Remediation Aromatics Other aromatics Corynebacterium glutamicum ATCC 13032 4927.561 86566820 alkB Organic Remediation Other Hydrocarbons Frankia sp. CcI3 29240.02743333 83593495 ppx Phosphorus Phosphorus utilization Rhodospirillum rubrum ATCC 11170 14047.76485 157283904 CopA Metal Resistance Copper Kineococcus radiotolerans SRS30216 25101.2943 145618783 nrfA Nitrogen Dissimilatory N reduction Geobacter bemidjiensis Bem 11709.4937 89200909 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus subsp. cytotoxis NVH 391-98 11964.91406667 50841539 FTHFS Carbon cycling Acetogenesis Propionibacterium acnes KPA171202 4884.65485 13517051 gyrB other category Phylogenetic marker marine CFB-group bacterium MBIC04477 14138.32735 19421902 rd Organic Remediation Chlorinated solvents Desulfitobacterium hafniense 14311.08325 15788845 nifH Nitrogen Nitrogen fixation uncultured bacterium 7332.86856667 95116231 amoA Nitrogen Nitrification uncultured crenarchaeote 15697.68245 29342124 gyrB other category Phylogenetic marker Enterococcus faecalis V583 21174.9796 15613955 ppk Phosphorus Phosphorus utilization Bacillus halodurans C-125 9823.60605 89951197 CopA Metal Resistance Copper Saccharophagus degradans 2-40 8867.07485 110599019 bclA Organic Remediation Aromatics Aromatic carboxylic acid Geobacter sp. FRC-32 16691.2167 94470871 nifH Nitrogen Nitrogen fixation uncultured bacterium 13897.7972 118424412 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 12584.93015 99030583 ppk Phosphorus Phosphorus utilization uncultured bacterium 5439.9778 114706526 xylA Carbon cycling Carbon degradataion Hemicellulose Fulvimarina pelagi HTCC2506 4948.47276667 99083005 nifH Nitrogen Nitrogen fixation uncultured bacterium 7469.9308 154083454 amyA Carbon cycling Carbon degradataion Starch Bifidobacterium adolescentis L2-32 19857.51636667 56476184 hmgC Organic Remediation Aromatics Aromatic carboxylic acid Azoarcus sp. EbN1 9068.01013333 118135434 ChrA Metal Resistance Chromium Clostridium novyi NT 31630.01233333 115402429 endoglucanase Carbon cycling Carbon degradataion Cellulose Aspergillus terreus NIH2624 27572.1246 88935439 czcA Metal Resistance Cadmium,Cobalt,Zinc Geobacter uraniumreducens Rf4 6208.50725 8777584 proO Organic Remediation Aromatics Other aromatics Sphingomonas paucimobilis 14238.16275 49241054 CueO Metal Resistance Copper Staphylococcus aureus subsp. aureus MRSA252 6655.29023333 126355662 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas putida GB-1 17621.52135 77378785 nirS Nitrogen Denitrification uncultured bacterium 3774.69035 49525512 czcD Metal Resistance Cadmium,Cobalt,Zinc Candida glabrata CBS 138 6466.4717 119816573 phdCI Organic Remediation Aromatics Polycyclic aromatics Pseudomonas putida W619 9909.5976 11289.4574 13086.35513333 91689859 CopA Metal Resistance Copper Burkholderia xenovorans LB400 21807.46815 118666819 nagI Organic Remediation Aromatics Aromatic carboxylic acid Delftia acidovorans SPH-1 4604.0087 109290285 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6131.51533333 33320459 dsrA Sulphur sulfite reductase Desulfohalobium retbaense 19474.0929 113934988 xylanase Carbon cycling Carbon degradataion Hemicellulose Caulobacter sp. K31 11141.90895 71554742 czcC Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas syringae pv. phaseolicola 1448A 6410.3839 58615473 mcrA Carbon cycling Methane Methane production uncultured methanogenic archaeon 7397.0552 92908605 endochitinase Carbon cycling Carbon degradataion Chitin Mycobacterium sp. JLS 15415.7871 68346833 czcC Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas fluorescens Pf-5 5817.23935 117926659 silP Metal Resistance Silver Magnetococcus sp. MC-1 7769.28845 157085212 nrfA Nitrogen Dissimilatory N reduction Citrobacter koseri ATCC BAA-895 6660.8101 28851229 atzB Organic Remediation Herbicides related compound Pseudomonas syringae pv. tomato str. DC3000 6126.06045 126387286 PobA Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter baumannii ATCC 17978 6621.25303333 34104622 endochitinase Carbon cycling Carbon degradataion Chitin Chromobacterium violaceum ATCC 12472 9711.63365 158510468 nifH Nitrogen Nitrogen fixation Candidatus Desulfococcus oleovorans Hxd3 6118.04923333 120436415 linB Organic Remediation Pesticides related compound Gramella forsetii KT0803 4253.84245 126032295 endochitinase Carbon cycling Carbon degradataion Chitin Hypocrea jecorina 21783.9562 9575.5248 20163.6116 88920712 FTHFS Carbon cycling Acetogenesis Acidiphilium cryptum JF-5 21046.1553 119859401 tfdA Organic Remediation Aromatics Chlorinated aromatics Pseudomonas putida W619 5754.22525 68054868 amyA Carbon cycling Carbon degradataion Starch Exiguobacterium sibiricum 255-15 5874.79065 124005161 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Microscilla marina ATCC 23134 4277.6946 88799848 PobA Organic Remediation Aromatics Aromatic carboxylic acid Reinekea sp. MED297 16367.27633333 7030.72145 29160345 exoglucanase Carbon cycling Carbon degradataion Cellulose Xylaria hypoxylon 27871.8763 146279435 CadA Metal Resistance Cadmium Rhodobacter sphaeroides ATCC 17025 16775.76313333 72122187 pcaG Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 5005.2748 148554605 vanA Carbon cycling Carbon degradataion Others Sphingomonas wittichii RW1 5905.28356667 57013392 amyA Carbon cycling Carbon degradataion Starch Anaerobranca gottschalkii 7021.3365 119816225 CopA Metal Resistance Copper Pseudomonas putida W619 14946.6584 87331876 arhA Organic Remediation Aromatics Heterocyclic aromatics uncultured bacterium 5619.34175 145568841 ArsC Metal Resistance Arsenic Pseudomonas stutzeri A1501 4296.4439 89055560 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 13484.4304 77172854 gyrB other category Phylogenetic marker Streptococcus agalactiae COH1 5118.0763 119960122 dsrB Sulphur sulfite reductase uncultured prokaryote 6369.6896 39995808 cytochrome Energy process Energy process Geobacter sulfurreducens PCA 14713.42023333 71383812 nasA Nitrogen Assimilatory N reduction uncultured bacterium 6168.5235 44885888 endochitinase Carbon cycling Carbon degradataion Chitin Clostridium paraputrificum 13457.9387 126664506 CopA Metal Resistance Copper Marinobacter sp. ELB17 12341.31265 83942278 nagG Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 12913.6648 75825513 endochitinase Carbon cycling Carbon degradataion Chitin Vibrio cholerae O395 15220.82015 87281014 nirK Nitrogen Denitrification uncultured bacterium 10397.74226667 38637875 napA Nitrogen Dissimilatory N reduction Cupriavidus necator 7112.724 7188931 pmoA Carbon cycling Methane Methane oxidation Methylosinus trichosporium 3770.99365 15055577 dsrB Sulphur sulfite reductase Desulfotomaculum ruminis 5660.61085 83699766 amyA Carbon cycling Carbon degradataion Starch Pseudomonas mesoacidophila 7816.59715 944922 cellobiase Carbon cycling Carbon degradataion Cellulose 5451.95665 33596941 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella parapertussis 12822 6552.56666667 70732536 czcD Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas fluorescens Pf-5 6595.86045 74056846 czcA Metal Resistance Cadmium,Cobalt,Zinc Thiobacillus denitrificans ATCC 25259 20794.3338 92433681 gyrB other category Phylogenetic marker Mycobacterium sp. JLS 5886.51315 40362781 nosZ Nitrogen Denitrification uncultured soil bacterium 4002.1312 77961024 nrfA Nitrogen Dissimilatory N reduction Yersinia mollaretii ATCC 43969 4632.25525 4542.97743333 113732583 linB Organic Remediation Pesticides related compound Caulobacter sp. K31 8579.09785 4633583 nosZ Nitrogen Denitrification uncultured bacterium 696G 24361.21896667 6589.9081 6871.14095 88800613 mer Metal Resistance Mercury Reinekea sp. MED297 6970.2711 7097.6679 4249601 ureC Nitrogen Ammonification Actinomyces naeslundii 9713.16566667 126630170 mer Metal Resistance Mercury Marinobacter sp. ELB17 13149.41955 89274031 phenol_oxidase Carbon cycling Carbon degradataion Lignin Flammulina velutipes 11401.4422 122090150 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Yersinia enterocolitica subsp. enterocolitica 8081 7474.67986667 57160029 cda Carbon cycling Carbon degradataion Starch Thermococcus kodakarensis KOD1 11170.72456667 67851528 ppx Phosphorus Phosphorus utilization Clostridium thermocellum ATCC 27405 6150.75506667 118424508 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6678.1661 77814691 ppx Phosphorus Phosphorus utilization Shewanella putrefaciens CN-32 8577.4743 29339044 ChrA Metal Resistance Chromium Bacteroides thetaiotaomicron VPI-5482 4614.38715 56380307 ureC Nitrogen Ammonification Geobacillus kaustophilus HTA426 4457.81215 45421890 nirS Nitrogen Denitrification uncultured bacterium 19084.82033333 72383743 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 4808.30305 6939871 gyrB other category Phylogenetic marker Bergeyella zoohelcum 5689.72195 20516348 gdh Nitrogen Ammonification Thermoanaerobacter tengcongensis MB4 8435.58665 126319497 mdlD Organic Remediation Aromatics Other aromatics Pseudomonas putida GB-1 4881.8531 152981928 ChrA Metal Resistance Chromium Janthinobacterium sp. Marseille 12479.60815 89074207 endochitinase Carbon cycling Carbon degradataion Chitin Photobacterium sp. SKA34 14159.9151 69246710 gyrB other category Phylogenetic marker Enterococcus faecium DO 6076.81866667 24110653 dmsA Organic Remediation Others Rhodovulum sulfidophilum 14986.45576667 84497746 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 13394.46395 151281317 czcA Metal Resistance Cadmium,Cobalt,Zinc Janthinobacterium sp. Marseille 10025.20775 85835208 ZntA Metal Resistance Zinc Vibrio sp. MED222 8871.29955 121716412 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus clavatus NRRL 1 13381.49725 116191227 pheA Organic Remediation Aromatics Other aromatics Chaetomium globosum CBS 148.51 8022.64845 111222038 alkK Organic Remediation Others Frankia alni ACN14a 5875.748 45479225 tmoABE Organic Remediation Aromatics BTEX and related aromatics Pseudomonas mendocina 8726.49483333 4784.85565 145558304 rubisco Carbon cycling Carbon fixation Rhodobacter sphaeroides ATCC 17025 18406.43776667 34102341 atzA Organic Remediation Herbicides related compound Chromobacterium violaceum ATCC 12472 6344.0015 145297564 amyA Carbon cycling Carbon degradataion Starch Aeromonas salmonicida subsp. salmonicida A449 5281.5007 108463273 alkK Organic Remediation Others Myxococcus xanthus DK 1622 5967.43806667 52347164 xylanase Carbon cycling Carbon degradataion Hemicellulose Bacillus licheniformis DSM 13 5632.0068 84704123 linC Organic Remediation Pesticides related compound Parvularcula bermudensis HTCC2503 5426.58086667 78364719 SilA Metal Resistance Silver Thiomicrospira crunogena XCL-2 6903.7928 67525319 ZntA Metal Resistance Zinc Aspergillus nidulans FGSC A4 18298.5342 126578777 endochitinase Carbon cycling Carbon degradataion Chitin Algoriphagus sp. PR1 12583.6878 119353956 silC Metal Resistance Silver Chlorobium phaeobacteroides DSM 266 11709.5583 114762610 ZntA Metal Resistance Zinc Roseovarius sp. HTCC2601 4867.24895 94426207 ureC Nitrogen Ammonification Oceanobacter sp. RED65 15810.88355 3261632 pcc Carbon cycling Carbon fixation Mycobacterium tuberculosis H37Rv 5695.24185 28866794 gyrB other category Phylogenetic marker Cyclobacterium marinum 20829.0676 29466078 norB Nitrogen Denitrification uncultured bacterium 5242.6315 157962519 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 5853.9348 3157728 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 8262.2035 157285722 napA Nitrogen Dissimilatory N reduction uncultured bacterium 8553.132 124007917 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Microscilla marina ATCC 23134 11269.7934 87281227 nirS Nitrogen Denitrification uncultured bacterium 19490.2984 77979134 dmsA Organic Remediation Others Yersinia intermedia ATCC 29909 5359.84255 85091062 xylanase Carbon cycling Carbon degradataion Hemicellulose Neurospora crassa OR74A 5678.97505 114307090 czcD Metal Resistance Cadmium,Cobalt,Zinc Nitrosomonas eutropha C71 4704.8238 76057603 nosZ Nitrogen Denitrification uncultured bacterium 13725.93905 24496479 cellobiase Carbon cycling Carbon degradataion Cellulose Fervidobacterium sp. YNP 4868.6986 84389239 pimF Organic Remediation Aromatics Aromatic carboxylic acid Oceanicola batsensis HTCC2597 17585.63983333 156742520 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Roseiflexus castenholzii DSM 13941 12589.7137 148240971 CopA Metal Resistance Copper Bradyrhizobium sp. BTAi1 6550.32593333 91690259 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 4374.85115 14582626 silC Metal Resistance Silver Pseudomonas putida 8948.28863333 82716042 CopA Metal Resistance Copper Pseudomonas putida F1 6018.18335 15964285 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sinorhizobium meliloti 1021 9051.09953333 50982437 pmoA Carbon cycling Methane Methane oxidation uncultured bacterium 5240.97455 68562916 FTHFS Carbon cycling Acetogenesis Rubrobacter xylanophilus DSM 9941 6153.48063333 46307836 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6888.53285 50425547 tftH Organic Remediation Aromatics Chlorinated aromatics Debaryomyces hansenii CBS767 5226.23095 55978100 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5678.47773333 29610016 TerZ Metal Resistance Tellurium Streptomyces avermitilis MA-4680 8875.58355 33385657 nifH Nitrogen Nitrogen fixation uncultured bacterium 3916.71935 114228251 ArsA Metal Resistance Arsenic Alkalilimnicola ehrlichei MLHE-1 12056.0007 114563803 cytochrome Energy process Energy process Shewanella frigidimarina NCIMB 400 4853.02965 126699238 TerZ Metal Resistance Tellurium Clostridium difficile 630 8529.1531 13517017 gyrB other category Phylogenetic marker marine CFB-group bacterium MBIC04453 8096.21845 133912309 mdlD Organic Remediation Aromatics Other aromatics Saccharopolyspora erythraea NRRL 2338 9570.7571 88711809 nbaC Organic Remediation Aromatics Nitoaromatics Flavobacteriales bacterium HTCC2170 9412.52213333 62131448 ppk Phosphorus Phosphorus utilization uncultured bacterium 9105.3463 126720178 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 11740.1385 146401516 rubisco Carbon cycling Carbon fixation Acidiphilium cryptum JF-5 5298.33855 89214407 nagI Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas alcaligenes 5277.4956 10661.15656667 5817.47435 118677988 phn Organic Remediation Herbicides related compound Enterobacter sp. 638 11922.37795 4048.8553 157918336 xylA Carbon cycling Carbon degradataion Hemicellulose Salinispora arenicola CNS-205 9477.37285 313111 ara Carbon cycling Carbon degradataion Hemicellulose Cellvibrio japonicus 5886.55835 16754881 ara_fungi Carbon cycling Carbon degradataion Hemicellulose Aspergillus oryzae 21871.3774 126358823 czcC Metal Resistance Cadmium,Cobalt,Zinc Pseudomonas putida GB-1 5018.8117 89319499 CopA Metal Resistance Copper Mycobacterium flavescens PYR-GCK 9348.33863333 40218014 phenol_oxidase Carbon cycling Carbon degradataion Lignin Ganoderma lucidum 9740.5521 121603932 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Polaromonas naphthalenivorans CJ2 6203.049 116201967 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Chaetomium globosum CBS 148.51 7483.69813333 72121305 Catechol Organic Remediation Aromatics Other aromatics Ralstonia eutropha JMP134 4800.5368 55380290 pcc Carbon cycling Carbon fixation Haloarcula marismortui ATCC 43049 5484.7156 1354283 xylG Organic Remediation Aromatics Aromatic carboxylic acid 8388.40735 42493191 tfdB Organic Remediation Aromatics Chlorinated aromatics Pseudomonas sp. WZ-2003 7303.78835 157960890 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 15402.29005 157373368 cytochrome Energy process Energy process Shewanella sediminis HAW-EB3 11785.27775 156860199 pcc Carbon cycling Carbon fixation Bacteroides uniformis ATCC 8492 11971.67036667 39943524 tftH Organic Remediation Aromatics Chlorinated aromatics Magnaporthe grisea 70-15 12704.1511 49523483 phenol_oxidase Carbon cycling Carbon degradataion Lignin Rigidoporus microporus 9530.42735 120587423 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax avenae subsp. citrulli AAC00-1 6790.4884 62130022 ppx Phosphorus Phosphorus utilization Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 10757.88466667 152970132 dmsA Organic Remediation Others Klebsiella pneumoniae subsp. pneumoniae MGH 78578 8829.58925 83316608 nirK Nitrogen Denitrification uncultured bacterium 7524.16955 94471035 nifH Nitrogen Nitrogen fixation uncultured bacterium 11609.0964 110822354 limEH Carbon cycling Carbon degradataion Others Rhodococcus sp. RHA1 7020.21855 21314953 napA Nitrogen Dissimilatory N reduction Bradyrhizobium japonicum 8800.986 17739598 CopA Metal Resistance Copper Agrobacterium tumefaciens str. C58 20872.59055 90324090 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Photobacterium profundum 3TCK 12685.49175 110341440 nifH Nitrogen Nitrogen fixation Chlorobium ferrooxidans DSM 13031 13917.23775 3925401 norB Nitrogen Denitrification Pseudomonas sp. G-179 9903.89446667 116255137 nitA Organic Remediation Aromatics Other aromatics Rhizobium leguminosarum bv. viciae 3841 4313.0616 4182.80995 118023161 silP Metal Resistance Silver Shewanella woodyi ATCC 51908 16797.50015 70673007 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 11614.0313 505126 rubisco Carbon cycling Carbon fixation Hydrogenophilus thermoluteolus 7523.9157 86360776 rubisco Carbon cycling Carbon fixation Rhizobium etli CFN 42 5020.7284 74494265 TerZ Metal Resistance Tellurium Bacillus thuringiensis serovar israelensis ATCC 35646 7073.60995 68135577 nifH Nitrogen Nitrogen fixation uncultured bacterium 10667.2157 120614980 CorC Metal Resistance Cobalt Bartonella bacilliformis KC583 7329.10955 88857171 acetylglucosaminidase Carbon cycling Carbon degradataion Chitin Pseudoalteromonas tunicata D2 10062.48 71848788 ChrA Metal Resistance Chromium Dechloromonas aromatica RCB 5370.83715 119818411 silC Metal Resistance Silver Stenotrophomonas maltophilia R551-3 6482.68455 39576776 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 8453.27186667 118424304 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 11851.20596667 111151982 TerZ Metal Resistance Tellurium Frankia alni ACN14a 5404.9247 58425534 ara Carbon cycling Carbon degradataion Hemicellulose Xanthomonas oryzae pv. oryzae KACC10331 6331.24355 86131209 nbaC Organic Remediation Aromatics Nitoaromatics Cellulophaga sp. MED134 14301.52206667 17231.2654 78167440 ppx Phosphorus Phosphorus utilization Pelodictyon luteolum DSM 273 8589.49725 68989433 endochitinase Carbon cycling Carbon degradataion Chitin Thermomyces lanuginosus 12023.1448 154162596 czcA Metal Resistance Cadmium,Cobalt,Zinc Xanthobacter autotrophicus Py2 6192.1767 77682720 catB Organic Remediation Aromatics BTEX and related aromatics Bradyrhizobium sp. UO 7336.99595 51013877 czcD Metal Resistance Cadmium,Cobalt,Zinc Saccharomyces cerevisiae 8059.30555 46389791 mcrA Carbon cycling Methane Methane production uncultured archaeon 5749.97455 149907925 pimF Organic Remediation Aromatics Aromatic carboxylic acid Moritella sp. PE36 4001.0492 119383921 Catechol Organic Remediation Aromatics Other aromatics Paracoccus denitrificans PD1222 8191.0489 17428766 alkK Organic Remediation Others Ralstonia solanacearum 11824.9859 72395058 nifH Nitrogen Nitrogen fixation Methanosarcina barkeri str. fusaro 6031.1478 29137736 narG Nitrogen Denitrification Salmonella enterica subsp. enterica serovar Typhi Ty2 10384.15163333 51856530 atzA Organic Remediation Herbicides related compound Symbiobacterium thermophilum IAM 14863 11349.30935 4237.04505 45723562 ArsA Metal Resistance Arsenic Lactobacillus plantarum WCFS1 11876.80363333 142849981 CopA Metal Resistance Copper Aeromonas salmonicida subsp. salmonicida A449 4746.5377 157963388 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 13085.98535 85069044 nifH Nitrogen Nitrogen fixation uncultured bacterium 10337.9886 157074582 TehB Metal Resistance Tellurium Streptococcus gordonii str. Challis substr. CH1 9094.1305 88772734 mer Metal Resistance Mercury Alteromonas macleodii 'Deep ecotype' 19300.8066 72162954 pcc Carbon cycling Carbon fixation Thermobifida fusca YX 18939.96993333 71383720 nasA Nitrogen Assimilatory N reduction Synechococcus sp. WH 7803 28921.2522 77456889 CopA Metal Resistance Copper Pseudomonas fluorescens PfO-1 7848.47255 142852981 endochitinase Carbon cycling Carbon degradataion Chitin Aeromonas salmonicida subsp. salmonicida A449 4381.8976 116227847 CopA Metal Resistance Copper Solibacter usitatus Ellin6076 10414.972 80159785 gyrB other category Phylogenetic marker Bacteriophage c-st 4643.21755 124266069 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Methylibium petroleiphilum PM1 8492.84133333 4588030 merB Metal Resistance Mercury Bacillus sp. RC607 7928.28745 55978091 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7325.89235 37528483 ppx Phosphorus Phosphorus utilization Photorhabdus luminescens subsp. laumondii TTO1 7849.89893333 11089.9012 34105356 alkK Organic Remediation Others Chromobacterium violaceum ATCC 12472 20786.9854 3805.6632 82452837 endochitinase Carbon cycling Carbon degradataion Chitin Francisella tularensis subsp. novicida 18119.5641 73537345 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha JMP134 7549.41563333 146154719 pcc Carbon cycling Carbon fixation Flavobacterium johnsoniae UW101 14550.73113333 49176889 pcpE Organic Remediation Herbicides related compound Ralstonia eutropha JMP134 4197.35555 119446090 CorC Metal Resistance Cobalt Alteromonadales bacterium TW-7 18620.61086667 119465439 nifH Nitrogen Nitrogen fixation Nodularia spumigena CCY9414 7276.95963333 62003533 narG Nitrogen Denitrification uncultured bacterium 8585.09135 94471027 nifH Nitrogen Nitrogen fixation uncultured bacterium 13618.373 70930934 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 7663.54605 40788173 phenol_oxidase Carbon cycling Carbon degradataion Lignin Melanocarpus albomyces 29470.8709 118164360 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium avium 104 8692.1793 39933493 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris CGA009 10775.58606667 393403 amyA Carbon cycling Carbon degradataion Starch Bacillus sphaericus 8853.0019 57235683 amoA Nitrogen Nitrification uncultured beta proteobacterium 10658.82423333 50950765 pcc Carbon cycling Carbon fixation Leifsonia xyli subsp. xyli str. CTCB07 4569.21255 89043141 ppx Phosphorus Phosphorus utilization Oceanicola granulosus HTCC2516 5964.3135 46115014 tftH Organic Remediation Aromatics Chlorinated aromatics Gibberella zeae PH-1 10878.95835 7578626 amoA Nitrogen Nitrification uncultured bacterium PS-58 5437.2901 151937130 pimF Organic Remediation Aromatics Aromatic carboxylic acid Vibrio sp. Ex25 10075.70886667 146195669 bphC Organic Remediation Aromatics Polycyclic aromatics Bradyrhizobium sp. ORS278 9935.7372 83953551 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. NAS-14.1 10013.40365 157960332 cytochrome Energy process Energy process Shewanella pealeana ATCC 700345 12056.75585 110679323 ppk Phosphorus Phosphorus utilization Roseobacter denitrificans OCh 114 3840.2943 116508772 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Coprinopsis cinerea okayama7#130 8263.9481 78484155 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces sp. AJ9463 10836.8611 5748626 CopA Metal Resistance Copper Streptomyces coelicolor A3(2) 10274.8264 127513207 cytochrome Energy process Energy process Shewanella loihica PV-4 14920.9034 114307112 ZntA Metal Resistance Zinc Nitrosomonas eutropha C71 17334.97665 89512612 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 5198.53793333 5530.7768 21220991 cellobiase Carbon cycling Carbon degradataion Cellulose Streptomyces coelicolor A3(2) 9423.2782 120325106 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Marinobacter aquaeolei VT8 12264.58503333 73535158 nifH Nitrogen Nitrogen fixation uncultured bacterium 15384.68235 70704732 gyrB other category Phylogenetic marker Acholeplasma morum 7151.56765 52840667 glucoamylase Carbon cycling Carbon degradataion Starch Legionella pneumophila subsp. pneumophila str. Philadelphia 1 11676.57515 124271095 FTHFS Carbon cycling Acetogenesis uncultured bacterium 10805.8629 16304109 ppk Phosphorus Phosphorus utilization Aphanizomenon sp. TR183 10127.48025 93004072 gyrB other category Phylogenetic marker Helicobacter trogontum 18746.2962 1255480 nifH Nitrogen Nitrogen fixation unidentified bacterium 24795.2209 116743208 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 30073.09936667 153888844 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia pickettii 12D 12666.2214 126719238 phtA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 10476.74223333 3293.34615 63257261 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Pseudomonas syringae pv. syringae B728a 6653.83365 126637073 nrfA Nitrogen Dissimilatory N reduction Shewanella loihica PV-4 16322.74293333 88854317 proO Organic Remediation Aromatics Other aromatics marine actinobacterium PHSC20C1 10627.56665 86567195 TerC Metal Resistance Tellurium Frankia sp. CcI3 4955.2869 3157588 nifH Nitrogen Nitrogen fixation unidentified nitrogen-fixing bacteria 7543.82616667 89512838 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 10840.07005 89076571 nreB Metal Resistance Nickel Photobacterium sp. SKA34 7428.87215 55791946 catechol_B Organic Remediation Aromatics Other aromatics uncultured bacterium 21768.61543333 84494737 amyA Carbon cycling Carbon degradataion Starch Janibacter sp. HTCC2649 15424.23165 68057335 ureC Nitrogen Ammonification Haemophilus influenzae 86-028NP 5143.0602 2765429 vanA Carbon cycling Carbon degradataion Others Pseudomonas putida 15194.18305 148571778 silC Metal Resistance Silver Psychrobacter sp. PRwf-1 14342.78425 86147454 ChrA Metal Resistance Chromium Vibrio sp. MED222 15073.6069 139002966 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 12041.31435 49612946 trzE Organic Remediation Herbicides related compound Erwinia carotovora subsp. atroseptica SCRI1043 8467.2197 157370568 ChrA Metal Resistance Chromium Serratia proteamaculans 568 6158.4164 151562419 merP Metal Resistance Mercury Ochrobactrum anthropi ATCC 49188 4921.20745 114778450 rubisco Carbon cycling Carbon fixation Mariprofundus ferrooxydans PV-1 9182.2052 126716777 mer Metal Resistance Mercury Roseobacter sp. CCS2 13392.1683 78360337 pcc Carbon cycling Carbon fixation Shewanella sp. PV-4 9020.7878 114550882 phdCI Organic Remediation Aromatics Polycyclic aromatics Mariprofundus ferrooxydans PV-1 6085.279 149935173 pcc Carbon cycling Carbon fixation Parabacteroides distasonis ATCC 8503 13969.84903333 109290313 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6426.1744 89335660 dmsA Organic Remediation Others Desulfitobacterium hafniense Y51 6351.62245 1001781 ppk Phosphorus Phosphorus utilization Synechocystis sp. PCC 6803 14126.6384 115367244 CopA Metal Resistance Copper Stigmatella aurantiaca DW4/3-1 3727.41325 89949849 glucoamylase Carbon cycling Carbon degradataion Starch Saccharophagus degradans 2-40 9962.8928 119877272 atzC Organic Remediation Herbicides related compound Stenotrophomonas maltophilia R551-3 6982.5407 89343562 gyrB other category Phylogenetic marker Rhodoferax ferrireducens DSM 15236 5475.83735 121593857 CopA Metal Resistance Copper Acidovorax sp. JS42 6714.31085 19552383 pcpE Organic Remediation Herbicides related compound Corynebacterium glutamicum ATCC 13032 11363.0243 149211003 amyA Carbon cycling Carbon degradataion Starch Magnaporthe grisea 70-15 14467.927 46307956 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 14816.18975 22293912 TehB Metal Resistance Tellurium Thermosynechococcus elongatus BP-1 14345.78786667 54302030 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Photobacterium profundum SS9 39086.83386667 118051712 gyrB other category Phylogenetic marker Comamonas testosteroni KF-1 5221.76996667 84489626 ZntA Metal Resistance Zinc Methanosphaera stadtmanae DSM 3091 7399.00905 11078715 gyrB other category Phylogenetic marker Pseudomonas stutzeri 5179.83295 109672093 ZntA Metal Resistance Zinc Campylobacter concisus 13826 10061.68045 16078436 Al Metal Resistance Aluminum Bacillus subtilis subsp. subtilis str. 168 6997.9932 149934329 nifH Nitrogen Nitrogen fixation Bacteroides vulgatus ATCC 8482 6544.7492 150015496 CopA Metal Resistance Copper Clostridium beijerinckii NCIMB 8052 8015.50753333 15644922 AmiE Organic Remediation Aromatics Other aromatics Helicobacter pylori 26695 12760.5237 110635001 ZntA Metal Resistance Zinc Mesorhizobium sp. BNC1 6892.0126 158331393 bphC Organic Remediation Aromatics Polycyclic aromatics Azorhizobium caulinodans ORS 571 7219.69475 71733609 amyA Carbon cycling Carbon degradataion Starch Pseudomonas syringae pv. phaseolicola 1448A 7009.86675 117996161 CopA Metal Resistance Copper Chloroflexus aggregans DSM 9485 10137.22906667 33242570 cellobiase Carbon cycling Carbon degradataion Cellulose Clostridium cellulovorans 12701.01235 110635877 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium sp. BNC1 6314.98645 42548702 ChrA Metal Resistance Chromium Gibberella zeae PH-1 19151.30965 116228733 hmgA Organic Remediation Aromatics Aromatic carboxylic acid Solibacter usitatus Ellin6076 7521.9673 84509018 pcaG Organic Remediation Aromatics Other aromatics Loktanella vestfoldensis SKA53 8147.16725 1839393 exochitinase Carbon cycling Carbon degradataion Chitin Trichoderma harzianum 9642.04855 70985695 phytase Phosphorus Phosphorus utilization Aspergillus fumigatus Af293 6924.2087 90331507 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid marine gamma proteobacterium HTCC2207 7194.6252 115283026 cellobiase Carbon cycling Carbon degradataion Cellulose Burkholderia cepacia AMMD 26062.93493333 126714547 nhh Organic Remediation Aromatics Nitoaromatics Roseobacter sp. CCS2 16529.5405 6322345 cellobiase Carbon cycling Carbon degradataion Cellulose Saccharomyces cerevisiae 20125.041 70606101 pcc Carbon cycling Carbon fixation Sulfolobus acidocaldarius DSM 639 8922.3332 53687382 tfdA Organic Remediation Aromatics Chlorinated aromatics Nostoc punctiforme PCC 73102 8063.00975 113526155 trzN Organic Remediation Herbicides related compound Ralstonia eutropha H16 9619.0924 112462935 nirK Nitrogen Denitrification uncultured bacterium 12054.02775 24380394 CadA Metal Resistance Cadmium Streptococcus mutans UA159 5678.71455 90022580 amyA Carbon cycling Carbon degradataion Starch Saccharophagus degradans 2-40 5729.2262 119817281 CopA Metal Resistance Copper Pseudomonas putida W619 12455.51536667 4981240 pcc Carbon cycling Carbon fixation Thermotoga maritima MSB8 12629.15195 603237 gyrB other category Phylogenetic marker 6341.1823 123444291 xylA Carbon cycling Carbon degradataion Hemicellulose Yersinia enterocolitica subsp. enterocolitica 8081 6420.32345 158436054 CopA Metal Resistance Copper Clostridium bolteae ATCC BAA-613 14709.9232 121583383 TerZ Metal Resistance Tellurium Polaromonas naphthalenivorans CJ2 4237.1544 116061971 dsrA Sulphur sulfite reductase Desulfovibrionales bacterium Spi55 7704.17276667 116253905 cellobiase Carbon cycling Carbon degradataion Cellulose Rhizobium leguminosarum bv. viciae 3841 6840.61125 89898960 phn Organic Remediation Herbicides related compound Rhodoferax ferrireducens T118 8149.16545 156976704 pcc Carbon cycling Carbon fixation Vibrio harveyi ATCC BAA-1116 10732.40456667 21233314 mer Metal Resistance Mercury Xanthomonas campestris pv. campestris str. ATCC 33913 9305.08695 82736341 nhh Organic Remediation Aromatics Nitoaromatics Pseudomonas putida F1 7251.30983333 157285383 nosZ Nitrogen Denitrification uncultured bacterium 3664.69355 158187216 nagI Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia sp. NCIMB 10467 7048.1929 156034753 tftH Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 6537.3353 16798077 mcrA Carbon cycling Methane Methane production Methanofollis liminatans 12332.24005 18476191 xylanase Carbon cycling Carbon degradataion Hemicellulose uncultured bacterium 6553.45755 133778508 endochitinase Carbon cycling Carbon degradataion Chitin uncultured bacterium 7684.79206667 42548332 tftH Organic Remediation Aromatics Chlorinated aromatics Gibberella zeae PH-1 8980.8336 134290397 ChrA Metal Resistance Chromium Ochrobactrum tritici 5810.60455 126721096 bclA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. SK209-2-6 11898.40146667 76557247 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 4886.76645 119226112 pheA Organic Remediation Aromatics Other aromatics uncultured bacterium 5756.8012 117992712 ChrA Metal Resistance Chromium Burkholderia phytofirmans PsJN 5473.76665 71845819 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB 9858.70715 92116515 hmgB Organic Remediation Aromatics Aromatic carboxylic acid Nitrobacter hamburgensis X14 4755.5404 111151694 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 9578.24256667 10236.3085 22778109 ArsC Metal Resistance Arsenic Oceanobacillus iheyensis HTE831 8722.1866 110169420 TerZ Metal Resistance Tellurium Trichodesmium erythraeum IMS101 7752.56505 86155864 hao Nitrogen Nitrification Campylobacter fetus subsp. fetus 82-40 4166.8856 21241130 PobA Organic Remediation Aromatics Aromatic carboxylic acid Xanthomonas axonopodis pv. citri str. 306 8856.34325 15840397 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 8257.5769 49530951 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 13831.02615 78693083 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 7983.4236 33391427 nosZ Nitrogen Denitrification uncultured bacterium 5505.25366667 114764716 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseovarius sp. HTCC2601 7399.149 108765660 pcaG Organic Remediation Aromatics Other aromatics Rubrobacter xylanophilus DSM 9941 5935.3087 115519753 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisA53 5786.7288 99078367 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter sp. TM1040 3900.65925 33563759 ZntA Metal Resistance Zinc Bordetella pertussis Tohama I 6146.2073 66046834 cytochrome Energy process Energy process Pseudomonas syringae pv. syringae B728a 3536.4512 71733895 atzA Organic Remediation Herbicides related compound Pseudomonas syringae pv. phaseolicola 1448A 3775.51795 114328667 nagK Organic Remediation Aromatics Aromatic carboxylic acid Granulibacter bethesdensis CGDNIH1 3332.08035 27381531 PobA Organic Remediation Aromatics Aromatic carboxylic acid Bradyrhizobium japonicum USDA 110 3578.7738 84664853 proO Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 6817.45165 118068797 proO Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 12611.85345 10393.5021 155122232 gyrB other category Phylogenetic marker Paramecium bursaria chlorella virus MT325 6302.93986667 111022000 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodococcus sp. RHA1 5305.26335 113730617 pcaG Organic Remediation Aromatics Other aromatics Caulobacter sp. K31 3855.11325 149921726 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Plesiocystis pacifica SIR-1 5393.65343333 71159389 phenol_oxidase Carbon cycling Carbon degradataion Lignin Halocyphina villosa 9699.84163333 22255726 nifH Nitrogen Nitrogen fixation Mesorhizobium sp. 128a 8255.99873333 5902.4968 152983308 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janthinobacterium sp. Marseille 6676.1625 85775216 sox Sulphur Sulphur oxidation Anaeromyxobacter dehalogenans 2CP-C 4178.46685 62003505 narG Nitrogen Denitrification uncultured bacterium 3963.67815 4210874 Xamo Organic Remediation Other Hydrocarbons Xanthobacter autotrophicus Py2 4031.73475 109626259 phn Organic Remediation Herbicides related compound Haloquadratum walsbyi DSM 16790 6053.6349 13249545 dsrB Sulphur sulfite reductase uncultured sulfate-reducing bacterium 3794.0605 118053969 CopA Metal Resistance Copper Comamonas testosteroni KF-1 4285.34195 55230396 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 8125.37755 67773582 phenol_oxidase Carbon cycling Carbon degradataion Lignin Hortaea acidophila 9510.5342 42523321 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bdellovibrio bacteriovorus HD100 4395.695 78362640 SilA Metal Resistance Silver Thiomicrospira crunogena XCL-2 5085.9119 113867719 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 8693.79425 49475731 ppx Phosphorus Phosphorus utilization Bartonella henselae str. Houston-1 7193.55906667 119458102 amyA Carbon cycling Carbon degradataion Starch Lyngbya sp. PCC 8106 5289.7639 33391459 nosZ Nitrogen Denitrification uncultured bacterium 4066.24775 87200825 proO Organic Remediation Aromatics Other aromatics Novosphingobium aromaticivorans DSM 12444 6803.1106 85823677 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 5762.2719 84683883 proO Organic Remediation Aromatics Other aromatics Rhodobacterales bacterium HTCC2654 7872.1459 55230626 pimF Organic Remediation Aromatics Aromatic carboxylic acid Haloarcula marismortui ATCC 43049 6166.77866667 6822.8969 109455707 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter denitrificans OCh 114 7941.2782 113868114 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 8794.85615 55978130 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8974.66 149933450 pcc Carbon cycling Carbon fixation Bacteroides vulgatus ATCC 8482 12953.54055 88786857 xylF Organic Remediation Aromatics BTEX and related aromatics Synechococcus sp. WH 7805 7449.3055 15842013 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium tuberculosis CDC1551 6013.2542 89899144 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens T118 13394.24073333 33577853 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 7036.0669 83846425 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfitobacter sp. EE-36 9422.9136 13474207 pimF Organic Remediation Aromatics Aromatic carboxylic acid Mesorhizobium loti MAFF303099 8085.39955 91802339 rubisco Carbon cycling Carbon fixation Nitrobacter hamburgensis X14 4542.96945 125497164 trzN Organic Remediation Herbicides related compound Streptococcus sanguinis SK36 8424.5027 152974220 TerD Metal Resistance Tellurium Bacillus cereus subsp. cytotoxis NVH 391-98 16537.5453 71906013 pimF Organic Remediation Aromatics Aromatic carboxylic acid Dechloromonas aromatica RCB 5579.13543333 157322102 proO Organic Remediation Aromatics Other aromatics Serratia proteamaculans 568 11092.8026 53717075 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia mallei ATCC 23344 8538.3213 92112458 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 7999.27755 133920184 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 6200.828 19909565 gyrB other category Phylogenetic marker Brevundimonas diminuta 9118.5729 156056144 tftH Organic Remediation Aromatics Chlorinated aromatics Sclerotinia sclerotiorum 1980 9671.5186 78693666 proO Organic Remediation Aromatics Other aromatics Bradyrhizobium sp. BTAi1 7053.23546667 33601244 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella bronchiseptica RB50 6942.7845 11498283 xylF Organic Remediation Aromatics BTEX and related aromatics Archaeoglobus fulgidus DSM 4304 7308.7519 117562695 tutFDG Organic Remediation Aromatics BTEX and related aromatics Aeromonas hydrophila subsp. hydrophila ATCC 7966 4287.11525 86750693 PobA Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris HaA2 8604.87415 116694915 pcpE Organic Remediation Herbicides related compound Ralstonia eutropha H16 5062.58025 115255811 TerC Metal Resistance Tellurium Rhizobium leguminosarum bv. viciae 3841 4955.7737 119384579 CopA Metal Resistance Copper Paracoccus denitrificans PD1222 4619.9564 119898813 proO Organic Remediation Aromatics Other aromatics Azoarcus sp. BH72 7848.98975 50841347 ara Carbon cycling Carbon degradataion Hemicellulose Propionibacterium acnes KPA171202 4090.93705 84685575 pimF Organic Remediation Aromatics Aromatic carboxylic acid Rhodobacterales bacterium HTCC2654 9863.30143333 6549.51495 111151062 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 8882.24595 139003470 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 2847.80215 50085442 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 6946.73616667 7871.72716667 10644.35473333 146451063 merP Metal Resistance Mercury Lodderomyces elongisporus NRRL YB-4239 10488.34343333 91783772 PobA Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 5910.88335 109644450 amoA Nitrogen Nitrification uncultured crenarchaeote 4477.2277 126667714 phn Organic Remediation Herbicides related compound Marinobacter sp. ELB17 4827.05385 148255472 nhh Organic Remediation Aromatics Nitoaromatics Bradyrhizobium sp. BTAi1 14685.5977 76876307 pimF Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas haloplanktis TAC125 10786.6517 149232839 TerC Metal Resistance Tellurium Pedobacter sp. BAL39 5930.8798 94313555 tfdA Organic Remediation Aromatics Chlorinated aromatics Ralstonia metallidurans CH34 6713.24193333 76557015 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 3181.34665 13488281 phn Organic Remediation Herbicides related compound Mesorhizobium loti MAFF303099 8481.45105 154247979 atzC Organic Remediation Herbicides related compound Xanthobacter autotrophicus Py2 4325.47525 57225532 rd Organic Remediation Chlorinated solvents Dehalococcoides ethenogenes 195 13882.3671 58198973 ZntA Metal Resistance Zinc Rubrivivax gelatinosus 5339.37015 38194118 Xamo Organic Remediation Other Hydrocarbons uncultured bacterium 3773.269 152997053 catB Organic Remediation Aromatics BTEX and related aromatics Marinomonas sp. MWYL1 7242.85623333 145233815 tftH Organic Remediation Aromatics Chlorinated aromatics Aspergillus niger 4401.0101 78062539 cytochrome Energy process Energy process Burkholderia sp. 383 3363.7948 154243731 pheA Organic Remediation Aromatics Other aromatics Xanthobacter autotrophicus Py2 10010.89585 113527010 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 6692.78105 5206.07905 5961.7774 56709218 dehH109 Organic Remediation Chlorinated solvents Silicibacter pomeroyi DSS-3 4715.1998 4895143 endochitinase Carbon cycling Carbon degradataion Chitin Streptomyces lavendulae 3965.0468 50083601 pimF Organic Remediation Aromatics Aromatic carboxylic acid Acinetobacter sp. ADP1 9077.1928 89343846 proO Organic Remediation Aromatics Other aromatics Rhodoferax ferrireducens DSM 15236 14543.08333333 10408.74006667 154283367 endochitinase Carbon cycling Carbon degradataion Chitin Ajellomyces capsulatus NAm1 5570.0745 108760112 pimF Organic Remediation Aromatics Aromatic carboxylic acid Myxococcus xanthus DK 1622 6225.56495 56311794 ZntA Metal Resistance Zinc Azoarcus sp. EbN1 6769.59843333 157285724 napA Nitrogen Dissimilatory N reduction uncultured bacterium 6060.2096 99030476 ppk Phosphorus Phosphorus utilization uncultured bacterium 4054.47185 115371867 trzN Organic Remediation Herbicides related compound Stigmatella aurantiaca DW4/3-1 3579.7671 148570978 TerZ Metal Resistance Tellurium Psychrobacter sp. PRwf-1 6662.37833333 9718.94706667 116694319 pimF Organic Remediation Aromatics Aromatic carboxylic acid Ralstonia eutropha H16 4874.2119 56680894 mdlA Organic Remediation Aromatics Aromatic carboxylic acid Silicibacter pomeroyi DSS-3 5573.41925 111617415 nitA Organic Remediation Aromatics Other aromatics Acidovorax avenae subsp. citrulli AAC00-1 5724.09195 145097 hydrogenase Energy process Energy process 7930.35793333 110817875 pcaG Organic Remediation Aromatics Other aromatics Rhodococcus sp. RHA1 5236.44885 85824319 PobA Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 5520.7047 117989543 nhh Organic Remediation Aromatics Nitoaromatics Burkholderia phytofirmans PsJN 44794.36693333 5615.18195 113528998 xylJ Organic Remediation Aromatics BTEX and related aromatics Ralstonia eutropha H16 12818.2043 68164622 nirS Nitrogen Denitrification uncultured bacterium 5262.3121 4062861 phtA Organic Remediation Aromatics Aromatic carboxylic acid Sphingomonas paucimobilis 9389.92805 111151328 pimF Organic Remediation Aromatics Aromatic carboxylic acid Frankia alni ACN14a 9700.99266667 117980557 pcaG Organic Remediation Aromatics Other aromatics Burkholderia phymatum STM815 7343.4507 10956842 nahA Organic Remediation Aromatics Polycyclic aromatics Novosphingobium aromaticivorans 3664.81985 139003319 nifH Nitrogen Nitrogen fixation uncultured nitrogen-fixing bacterium 8662.2806 120606508 PhaB Organic Remediation Aromatics Aromatic carboxylic acid Acidovorax sp. JS42 5086.70526667 5739395 tfdA Organic Remediation Aromatics Chlorinated aromatics Streptomyces spectabilis 5638.39635 10441632 xylG Organic Remediation Aromatics Aromatic carboxylic acid Comamonas sp. JS765 7634.06555 21110586 czcA Metal Resistance Cadmium,Cobalt,Zinc Xanthomonas axonopodis pv. citri str. 306 4121.57135 15807656 ppk Phosphorus Phosphorus utilization Deinococcus radiodurans R1 3911.16475 33591862 pimF Organic Remediation Aromatics Aromatic carboxylic acid Bordetella pertussis Tohama I 5660.8704 91682484 rubisco Carbon cycling Carbon fixation Rhodopseudomonas palustris BisB5 22575.53406667 19575.2485 62816022 amyA Carbon cycling Carbon degradataion Starch Haloferax mediterranei 10509.44333333 76557884 pimF Organic Remediation Aromatics Aromatic carboxylic acid Natronomonas pharaonis DSM 2160 5510.9093 73542681 pcc Carbon cycling Carbon fixation Ralstonia eutropha JMP134 22502.8222 157375046 hydrogenase Energy process Energy process Shewanella sediminis HAW-EB3 8817.24465 149276790 ArsC Metal Resistance Arsenic Pedobacter sp. BAL39 31280.34186667 29291.68825 14571783 atzA Organic Remediation Herbicides related compound Streptomyces coelicolor A3(2) 15130.20225 119504787 linB Organic Remediation Pesticides related compound marine gamma proteobacterium HTCC2080 6421.1165 77969955 chnB Organic Remediation Other Hydrocarbons Burkholderia sp. 383 8355.18916667 37522627 xylF Organic Remediation Aromatics BTEX and related aromatics Gloeobacter violaceus PCC 7421 13600.63776667 12752.17945 112462703 nirK Nitrogen Denitrification uncultured bacterium 8024.66265 14495302 dhph Organic Remediation Aromatics Heterocyclic aromatics Arthrobacter nicotinovorans 7142.40473333 118166518 CDH Carbon cycling Carbon degradataion Cellulose Mycobacterium avium 104 4861.4484 118046477 trzE Organic Remediation Herbicides related compound Chloroflexus aggregans DSM 9485 7997.02595 90198212 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Mycobacterium vanbaalenii PYR-1 5609.09 148850790 ChrA Metal Resistance Chromium Bacillus sp. SG-1 63424.00025 65059.647 34102230 ChrA Metal Resistance Chromium Chromobacterium violaceum ATCC 12472 6454.2665 15186859 nifH Nitrogen Nitrogen fixation uncultured bacterium 5409.03776667 125486857 FTHFS Carbon cycling Acetogenesis uncultured bacterium 16673.86666667 15510.90645 1127820 exaA Organic Remediation Chlorinated solvents Methylophilus methylotrophus 18578.2422 118746880 ChrA Metal Resistance Chromium Geobacter lovleyi SZ 6218.3556 91684618 mdlC Organic Remediation Aromatics Aromatic carboxylic acid Rhodopseudomonas palustris BisB5 8429.7071 84043021 pcaG Organic Remediation Aromatics Other aromatics uncultured bacterium 81575.88566667 90195860 limEH Carbon cycling Carbon degradataion Others Mycobacterium vanbaalenii PYR-1 5900.6162 85707360 CopA Metal Resistance Copper Roseovarius sp. 217 7723.1503 62003553 narG Nitrogen Denitrification uncultured bacterium 6370.7866 113733168 pcc Carbon cycling Carbon fixation Caulobacter sp. K31 7586.0383 91779809 pimF Organic Remediation Aromatics Aromatic carboxylic acid Burkholderia xenovorans LB400 25785.0798 110646174 alkJ Organic Remediation Other Hydrocarbons Alcanivorax borkumensis SK2 15337.56705 118703293 nitA Organic Remediation Aromatics Other aromatics Sphingomonas wittichii RW1 11678.45163333 116096221 ppx Phosphorus Phosphorus utilization Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 9973.58925 56419124 ArsC Metal Resistance Arsenic Geobacillus kaustophilus HTA426 8951.36583333 11640747 amoA Nitrogen Nitrification Nitrosococcus halophilus 9655.65646667 8447.1151 99082486 alkB Organic Remediation Other Hydrocarbons Silicibacter sp. TM1040 6974.72445 145964002 ChrA Metal Resistance Chromium Vibrionales bacterium SWAT-3 5296.7841 116249426 alkJ Organic Remediation Other Hydrocarbons Rhizobium leguminosarum bv. viciae 3841 8294.66663333 33633027 ChrA Metal Resistance Chromium Synechococcus sp. WH 8102 7789.21455 84384755 pimF Organic Remediation Aromatics Aromatic carboxylic acid Janibacter sp. HTCC2649 7222.08835 111222753 CDH Carbon cycling Carbon degradataion Cellulose Frankia alni ACN14a 12359.40985 119462278 phtA Organic Remediation Aromatics Aromatic carboxylic acid Nodularia spumigena CCY9414 8790.53815 77456479 nmoA Organic Remediation Aromatics Nitoaromatics Pseudomonas fluorescens PfO-1 5608.79535 88864470 pimF Organic Remediation Aromatics Aromatic carboxylic acid Jannaschia sp. CCS1 8558.383 118619890 CopA Metal Resistance Copper Mycobacterium ulcerans Agy99 7327.1902 90324344 ureC Nitrogen Ammonification Photobacterium profundum 3TCK 32226.14225 13815295 pimF Organic Remediation Aromatics Aromatic carboxylic acid Sulfolobus solfataricus P2 6324.03395 49530733 nmoA Organic Remediation Aromatics Nitoaromatics Acinetobacter sp. ADP1 10494.66556667 24372165 pimF Organic Remediation Aromatics Aromatic carboxylic acid Shewanella oneidensis MR-1 11267.6737 84778341 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 5494.52445 82720429 tutFDG Organic Remediation Aromatics BTEX and related aromatics Shewanella sp. W3-18-1 5966.0479 92112456 proO Organic Remediation Aromatics Other aromatics Chromohalobacter salexigens DSM 3043 7601.4821 109702473 PobA Organic Remediation Aromatics Aromatic carboxylic acid Pseudoalteromonas atlantica T6c 5982.44435 109290282 dsrA Sulphur sulfite reductase uncultured sulfate-reducing bacterium 8673.8602 53804189 czcA Metal Resistance Cadmium,Cobalt,Zinc Methylococcus capsulatus str. Bath 10617.776 86138268 pimF Organic Remediation Aromatics Aromatic carboxylic acid Roseobacter sp. MED193 171317.4453 42545878 pheA Organic Remediation Aromatics Other aromatics Gibberella zeae PH-1 37162.02735 32035311 nrfA Nitrogen Dissimilatory N reduction Actinobacillus pleuropneumoniae serovar 1 str. 4074 6041.50035 58270656 mdlB Organic Remediation Aromatics Aromatic carboxylic acid Cryptococcus neoformans var. neoformans JEC21 6391.2321 14715451 xylF Organic Remediation Aromatics BTEX and related aromatics Pseudomonas putida 6434.7748 118469596 nmoA Organic Remediation Aromatics Nitoaromatics Mycobacterium smegmatis str. MC2 155 5875.6886 51977960 nagG Organic Remediation Aromatics Aromatic carboxylic acid Bacillus cereus E33L 29155.43255 68054052 amyA Carbon cycling Carbon degradataion Starch Exiguobacterium sibiricum 255-15 5559.14235 68262858 GCoADH Organic Remediation Aromatics Aromatic carboxylic acid Corynebacterium jeikeium K411 12330.95175 151123 catB Organic Remediation Aromatics BTEX and related aromatics 8955.82705 4996832 gyrB other category Phylogenetic marker bacterium rA9 4692.98865